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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0418000 |
| Transcript ID | LotjaGi2g1v0418000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Beta-amylase; TAIR: AT4G17090.1 chloroplast beta-amylase; Swiss-Prot: sp|O23553|BAM3_ARATH Beta-amylase 3, chloroplastic; TrEMBL-Plants: tr|A0A0B2SBX7|A0A0B2SBX7_GLYSO Beta-amylase; Found in the gene: LotjaGi2g1v0418000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:91645820..91650688) extracted from Lotus japonicus Gifu genome v1.2.
CATGATAAGTGTTTGCTCTAAGTGGTAAACACTTGTCCACAAAATATGATTCATTTTAATGGACACTAATTAAACTCTTA AACTCATAATTAAGAGATGATGTGAACACCCCAAATGATTATATCGACAATATTAAAATTCTATGTGGCTATCAAATATT AAAGAAAGCTATTGCTAAATTAGGAAGTAGAAACATTCAAGAAAAAAACAATAAAAAGTTGAACATTTTATTTCACAATT GGTTGCTCCAAAACACGTAGTCACGTAGAAAGAACGGTCCAAGACTAATAAAGAAAGCAAAGAAAGAGTTCCTACGAGCC ACAGATTCTTCCACCCAAAATAAACGTCGACCCTGTCTTATCTTTTGCAAATTAAAAAATAACCAAGAGAATATTAAAAT TATGAGATGTTTTCATCCACGAAACCCAGTTTGCTGGAGATGGCAGATAACACACACCGAGTACTAAGATTGTTCACTTG GTAGGGCTATCCTATGCAGAACCACTCAACAGTTATCATTGCAATGAGTTTCCATTTTTAAAGAAAAGTAGAAGAAATGA AGTAGAAAGTTATATGGCAATTCATTTTTCACTGTGGAATAAATAAAAGATATTTCACCTGCCTACAAATTCATTATTAA GAAAATCCGAAATTTGAATAAAGGGTGGACACTTTATAAAATTTCAGCTGTTTTCTTCAGTATTCATTTCAGTGATCAAA CTCAATCATTAATTAAGGAAAACTATTGTATTGTTCTCCAAGCTCACCACCTTCCTTAGCAGAGGACTTAGAATTCAAAT CTTTTAACTTTTAGCCACTATGATTTCAATTTAGTCTAATGATCTTAAATAGAATCGACATGAGTTTGAATCACACAGAT AATTTGAATTCAATGGACAACCAAATAATTACTACAAAAATAAAAATATTAAAATTATAATACAATTTCCTGTCCAAAAA AATCATTCTCTTTCACCTTAACCAACAATGGTTTGTCAGATCATGAGCTAATTACACTCAAGTAAAGTCTAGAGTTCGAG TAGCAAGTCAGATGGCGGGTTTTAACCGCTGCAAATGTTAACCACCATATATTTCTTTCCTTTCCTTAATTCAACGCAAT TAACGTGTTGTAACTGGGTGACCGTTAAAAACTAAAGTCGACGTGTTTCTGATTAATTAGATAAGAATGGAAGAGGTGGA AGCACGTAAGCAAGTGTCACACACAGCCAACGAGGTTTGATTTTTTGCACTTTTCCACCTATCAACATGGACCCACTAAG GTAGTCAACTTCAATTCTCAAACCCAAACTAGATCTGCTTTTGTATAAATAAGCACGAATTATCTTAAGCCATTCCAACA TTAACATAGTATTATTATTACTCTCCCTCCATCTTCAATCGAAACAGAGATACTACAGAAGAACAATAAAATGGCAATAA CACTTCGGTCTGCAATTTCTTTCGTTAGCAACAAAGAAACCAAAGCTTTTGATTACGTTTCTTACAAAGTTGTAAGTTTT CCAAAAATGAAAGCATCATTTCGTCTCCAAGCAAAGAGTTCCATACAAGAAGCACACTTGAGAAACAAGAATTGGGAGGA GGTTCATCATGCCCCATTGGTTATTCATGCTCCATTGGTTGTTCATGAACATAGTGATTCAAAGAGGGTACCTGTATTTG TGATGCTGCCACTAGAGACGGTGACAGTGGGAGGAACTTTGAATAAGCCAAGGGCAATGAATGCTAGTTTGATGGCCTTG AAGAGTGCAGGGGTTGAGGGAGTGATGGTGGATGTTTGGTGGGGTTTGGTGGAAAAAGATGGACCTTTAAACTACAACTG GGAAGGCTATGCTGAGCTTTTTCAGATGGTGCAAAAGCACGGCTTGAAGGTTCAGGTTGTTATGTCTTTCCATCAATGTG GAGGAAATGTTGGAGACTCCTGCAGGTACCAAATTAAAGACCACTTCTTTTAAGTTACTTTAACTTATTAAATATGTTCT GTCATTTTTTTATGCCTTCTTTAATAGCAAGTTTGAATCAATTTCTCTTTCTGCATAGTCAATGATGACACTGAGAAGTT ACTTAGCTTCTTCCCATAATCAATTGTAGAAGGGTTTAGAAACATGCACTAATTTTCAGGGACTGATTTTCTTTTTATTG CATTTTTTAGCATTCCTCTACCACCTTGGGTGCTGGAAGAAATCGGCAAGAATCCTGACCTGGTTTACACAGACAGATCA GGGAGAAGAAATCCTGAATACATCTCATTGGGCTGTGATTCAATGCCTGTTCTAAGAGGAAGGTCTCCCCTTCAGGTGTA CTCTGATTACATGAGGAGCTTCCGCGACAGCTTCGGAGATTATATGGGCAGTGTTATCAGAGTAAGTAGTACATCTTAAT TAAAATTTTGAGATATGTAGCAGCTAGTACTATCGTATTAAGAGCTCGTTTGGATGAGAACCAAAGATCACTTATTGAAG CTTATCTAGTGCATTTATTTAGTAGATAGGCTCCAATAAGTGATCCTTAGTCCTCATCCAAATGGAATCTAAGTACATTA GAAACCATATATGTTTATAAATATTAGGAGGGGTGTCAATAAGATGACTAATGATCAAATCACGGTACAAGTGGAAGGAG GGCACTTATGATTGATAATAAACTAGCACTTGATGCATATGTTGCCAGATATGAAATTCTAAAACCAAATTCATTTGCAG GAAGTTCAAGTGGGATTGGGTCCTTGTGGGGAGCTGAGATATCCATCATATCCAGAAAGTGAAGGAACCTGGAGGTTTCC TGGAATTGGAGAATTCCAGTGCTATGACAAGGTATGGGAGAAGAAGGCATTAATTTTTAACTATTTTTTAAAAATGGTCC AAAATCATGTTAAATTACTTAGGTTTCATTACAATTAGACCCTTGATCTCAATCTTTGTGATAACAAGGACACTTTACAC ATGACAGAATTTCAAAATATATAGTTACTAAGCGCATGTTTGGAAACCTATCTATAATTGTTTCTGATTTTGAAGCCATA ATCAATTCTAGGGAGAAAGTTATGTGAGTAGCTTCTAGGTTTCAGAATTGATTCTGAGAAAGAGAAGCTAGACACAAACA TACTATAGAATAATGGATTAAAATAATAGATGATTTGTTTCCTGTGTGCTTACTAAAAGTAATTGTTTCTTTGTCATGCA GTACATGAAAGCTTCCTTGGAAGCATCAGCTGAGGCAATTGGGAAGAAAGATTGGGGAAGAAGTGGTCCCCATGACTCAG GCCAGTACAATCAATTTCCTGAGGATACTGGATTTTTCAAGAGGGAAGGAACATGGAACACTGAATATGGACACTTCTTC CTGGAGTGGTACTCCAATAAACTTCTTGAACATGGTGAGAGTATCCTTGTGGCTGCAAAAGGAATATTTCAAGATTCTGG GGTGAAACTATCTGCCAAAGTAGCTGGAATTCATTGGCATTACAGAGCAAGGTCACATGCAAGTGAACTAAATGCAGGCT ACTATAACACAAGGTTTCATGATGGTTACCTACCAATAGCTCAAATGTTTGCAAGACATGGAGTTGTGCTCAATTTCACA TGCATGGAAATGAAGGACAGGGAGCAACCTGAACATGCTAATTGCTCCCCCGAAGGATTGGTTCATCAAGTGAAGAATGC AACCACGAGTGCAGGGGCAGAACTTGCGGGAGAGAATGCATTAGAGAGATATGATGCAGGGGCATTTGGTCAAGTTTTGT CAACAAGTAACTCTGGGAGTGGATTGGGTGCATTTACTTATCTAAGAATGAATAAGAGGTTGTTTGAGGGTGATAACTGG CGGCACTTTGCGGGATTCGTAAGAAGCATGTCTGAGGGTGGTCAGAGACAAAGGCTCCCAGTTTCTGATTCCTTTGGGAT TAAACTTTATGTTGGACACATCAAAGGAATTGAACAGAAGCAAGATCAAGAGGCTGCTCTTGTGTGAACACATATAGCAT ATTGTAGATGGGTCTCTGTGTATACTTAAAAGTATAGTAAATTTTATAGGGAAGAGGAAGAAAAATTGAGTAGCGAGAGA AAAGAGGTAGTTAGAATTTTATGGTGTGTATACGCGATAAAAATGATTTTTTCCATGCCAAAACCTGAGATTATCAGGAC AATATTACTCCAGAATATTTTTAAGTATGTTTGGATCGGAGTTAGCAAAATTGATTCTACTAAAATTGTGTATGGTAAAC TTGAGTTAAAACAATGTGATTTATGTTTGGATACATTTATGAAAATAATAGTTTGTATAAGGTGATGTTATGAATTTCAA TTGTAAAACCTCATAATTGATTATGTTTAATGTAGAAGCAACTATTTATTGTGGCAAGTGGATCCAATTCTTGACACATG ATATCAATTTTACTGGTATACCCAAACATCATTTCAACTGGTTAGAATTGATTTTAACCAACTATAATTGTTTTAATAGA ATTGATTTGCTTCCCGAACATGCTCTAAGTGTTGTTCCAAGGGTGGATTCCCAGTAACTTGTGTATTTGACATAAATGTC ATTTTATTTGTTTTAATATATTTGCATAATACATAAAATACAAGATCAAATTAGAGAGAATTATAATCATACTCACCAGG ACTTAATGCCCCTTTGATTCCAAGTTACTTTATAAGCTTGACAAAGAAGTTTCATAACCAACCTTCTCCTGAAAAAGAAA AAAGAAAATCGTTTTAAAAAACAAAACATATATAACTAGATCAAAGTTCACTAGTCTCACACGAGAGCTGGATTTGCCAC CCCAACCATTAGATTTCACACCCCTAATTTTCGGATTTTCCAGTTCTGAATTATTTCGGAATCTTAGAT
CDS sequence (LotjaGi2g1v0418000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAATAACACTTCGGTCTGCAATTTCTTTCGTTAGCAACAAAGAAACCAAAGCTTTTGATTACGTTTCTTACAAAGT TGTAAGTTTTCCAAAAATGAAAGCATCATTTCGTCTCCAAGCAAAGAGTTCCATACAAGAAGCACACTTGAGAAACAAGA ATTGGGAGGAGGTTCATCATGCCCCATTGGTTATTCATGCTCCATTGGTTGTTCATGAACATAGTGATTCAAAGAGGGTA CCTGTATTTGTGATGCTGCCACTAGAGACGGTGACAGTGGGAGGAACTTTGAATAAGCCAAGGGCAATGAATGCTAGTTT GATGGCCTTGAAGAGTGCAGGGGTTGAGGGAGTGATGGTGGATGTTTGGTGGGGTTTGGTGGAAAAAGATGGACCTTTAA ACTACAACTGGGAAGGCTATGCTGAGCTTTTTCAGATGGTGCAAAAGCACGGCTTGAAGGTTCAGGTTGTTATGTCTTTC CATCAATGTGGAGGAAATGTTGGAGACTCCTGCAGCATTCCTCTACCACCTTGGGTGCTGGAAGAAATCGGCAAGAATCC TGACCTGGTTTACACAGACAGATCAGGGAGAAGAAATCCTGAATACATCTCATTGGGCTGTGATTCAATGCCTGTTCTAA GAGGAAGGTCTCCCCTTCAGGTGTACTCTGATTACATGAGGAGCTTCCGCGACAGCTTCGGAGATTATATGGGCAGTGTT ATCAGAGAAGTTCAAGTGGGATTGGGTCCTTGTGGGGAGCTGAGATATCCATCATATCCAGAAAGTGAAGGAACCTGGAG GTTTCCTGGAATTGGAGAATTCCAGTGCTATGACAAGTACATGAAAGCTTCCTTGGAAGCATCAGCTGAGGCAATTGGGA AGAAAGATTGGGGAAGAAGTGGTCCCCATGACTCAGGCCAGTACAATCAATTTCCTGAGGATACTGGATTTTTCAAGAGG GAAGGAACATGGAACACTGAATATGGACACTTCTTCCTGGAGTGGTACTCCAATAAACTTCTTGAACATGGTGAGAGTAT CCTTGTGGCTGCAAAAGGAATATTTCAAGATTCTGGGGTGAAACTATCTGCCAAAGTAGCTGGAATTCATTGGCATTACA GAGCAAGGTCACATGCAAGTGAACTAAATGCAGGCTACTATAACACAAGGTTTCATGATGGTTACCTACCAATAGCTCAA ATGTTTGCAAGACATGGAGTTGTGCTCAATTTCACATGCATGGAAATGAAGGACAGGGAGCAACCTGAACATGCTAATTG CTCCCCCGAAGGATTGGTTCATCAAGTGAAGAATGCAACCACGAGTGCAGGGGCAGAACTTGCGGGAGAGAATGCATTAG AGAGATATGATGCAGGGGCATTTGGTCAAGTTTTGTCAACAAGTAACTCTGGGAGTGGATTGGGTGCATTTACTTATCTA AGAATGAATAAGAGGTTGTTTGAGGGTGATAACTGGCGGCACTTTGCGGGATTCGTAAGAAGCATGTCTGAGGGTGGTCA GAGACAAAGGCTCCCAGTTTCTGATTCCTTTGGGATTAAACTTTATGTTGGACACATCAAAGGAATTGAACAGAAGCAAG ATCAAGAGGCTGCTCTTGTGTGA
Protein sequence (LotjaGi2g1v0418000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAITLRSAISFVSNKETKAFDYVSYKVVSFPKMKASFRLQAKSSIQEAHLRNKNWEEVHHAPLVIHAPLVVHEHSDSKRV PVFVMLPLETVTVGGTLNKPRAMNASLMALKSAGVEGVMVDVWWGLVEKDGPLNYNWEGYAELFQMVQKHGLKVQVVMSF HQCGGNVGDSCSIPLPPWVLEEIGKNPDLVYTDRSGRRNPEYISLGCDSMPVLRGRSPLQVYSDYMRSFRDSFGDYMGSV IREVQVGLGPCGELRYPSYPESEGTWRFPGIGEFQCYDKYMKASLEASAEAIGKKDWGRSGPHDSGQYNQFPEDTGFFKR EGTWNTEYGHFFLEWYSNKLLEHGESILVAAKGIFQDSGVKLSAKVAGIHWHYRARSHASELNAGYYNTRFHDGYLPIAQ MFARHGVVLNFTCMEMKDREQPEHANCSPEGLVHQVKNATTSAGAELAGENALERYDAGAFGQVLSTSNSGSGLGAFTYL RMNKRLFEGDNWRHFAGFVRSMSEGGQRQRLPVSDSFGIKLYVGHIKGIEQKQDQEAALV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 539 | 539 | 0.0 | – | |
| PANTHER | 1 | 539 | 539 | 0.0 | ||
| Gene3D | 70 | 532 | 463 | 3.9E-201 | – | |
| SUPERFAMILY | 78 | 505 | 428 | 1.29E-187 | ||
| Pfam | 83 | 498 | 416 | 7.0E-167 | ||
| PRINTS | 114 | 128 | 15 | 1.6E-70 | ||
| PRINTS | 135 | 153 | 19 | 1.6E-70 | ||
| PRINTS | 157 | 178 | 22 | 1.6E-70 | ||
| ProSitePatterns | 161 | 169 | 9 | - | ||
| PRINTS | 249 | 271 | 23 | 1.6E-70 | ||
| PRINTS | 324 | 343 | 20 | 1.6E-70 | ||
| PRINTS | 360 | 376 | 17 | 1.6E-70 | ||
| PRINTS | 377 | 388 | 12 | 1.6E-70 | ||
| PRINTS | 395 | 418 | 24 | 1.6E-70 | ||
| PRINTS | 432 | 454 | 23 | 1.6E-70 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Polysaccharide catabolic process | The chemical reactions and pathways resulting in the breakdown of a polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically. | ||
| Molecular function | Beta-amylase activity | Catalysis of the reaction: (1,4-alpha-D-glucosyl)(n+1) + H2O = (1,4-alpha-D-glucosyl)(n-1) + alpha-maltose. This reaction is the hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides so as to remove successive maltose units from the non-reducing ends of the chains. |
Expression pattern of LotjaGi2g1v0418000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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