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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0419900 |
| Transcript ID | LotjaGi2g1v0419900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 50S ribosomal protein L19; TAIR: AT4G17560.1 Ribosomal protein L19 family protein; Swiss-Prot: sp|P82413|RK19_SPIOL 50S ribosomal protein L19, chloroplastic; TrEMBL-Plants: tr|I3T349|I3T349_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0419900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:91810269..91813400) extracted from Lotus japonicus Gifu genome v1.2.
TTTGTTGGGCTTTTGGATAGAATTCATTGCATGATGAATTTTGCAGGCCTGGCCCAAAGGAAAAAAAACAAAACATGAGT ATGTTGACCCAAAAAAAATTGGAATGGATAGAAACAGATAAGGAGCTTCGTTAGGTGCTGTTACCTTCCTCTTCTTCCAT TTGCAGTGTTCCCATGAAACCTTCCCACTGAGTCAACTCACTCTGTACATAAAACCCTCTTCATCATCATCATGGCTTCT CAAGTTTTTCTTCAGGTTTCTACTCTCACTCTCTCATCTTTACTATTCAATTCAATTTCAAAACTGTTAACATTTTCAAC TACTCATTCAAATTGCATTGCATTGCAGCAAGGGTTGTTACTGTTTGCCCCAAACCAATGTTCTCCAACCAAGCTCGGTG TATCTTCTTGCCTCGGTTCTCGTAACTTTCCGTTGATTTCCTCCACCTCAATTTCATGGCGTTGCAACAACCCTCTCTCT GCCAAACCCTCTTTTGTTGTCAGAGCTGACTCCAATGTCGACGCTGCTTCCGACAATGCTGGTGAAGTTCCAGAAGCTGA AGGTAGCGTTGATCAGGTTCCTGAAGATGGAGAAGCAGAACTAGCTTCGGATTCTGAGGTGGAGCAACCCAAGCCCCCTA GAAAGCAACGAGTCAAGCTTGGAGATGTTATGGGGGTAAATTGCTACTTCCTTATCTCAATTTTGTAGTACTGTTATTGA TTTTCCTTGTATTCAGATTCTATTTTGAAGGTTAATTGGAATGGTAATATTCAGTGTTTGTATTTGGGGTTGTTCAGGTT TTGGTTTTGAAATGCAATTTTTAAACTACATTGAGATAGAATGATTCTTAGCTTAGCTTAATTTTAAAATGATTTTTGCC CGATTTTCAGAACAATCGTGTTGCTAATTTAACTAGTGAGTGATGGAATGTAAGGGGGGAGAAGATAGATGAAATATAAA AGACATGCTGTTGTTTTTCATGCAGATATTGAATCAGAGGGCAATTGAGGCATCGGAAAGCATGAGGCCGACTCCAGAAA TTAGGACTGGAGATGTTGTGGAAATCAAACTGGTAATTTTTTTTTCAGAAGACAAAATATTTTTTAGGAGAACACTTGGC TGAGATGAATTTTATGGTGTTCTATTTTTGTTCCACTTACAGGAAGTTCCTGAGAACAAGCGTAGGTTGTCTATTTATAA AGGTATAGTCATCTCAAGACAAAATGCTGGTATTCACACAACTATTCGAATCCGAAGGATTATTGCTGGCACAGGGGTTG AGATTGTCTTCCCAATGTAAGTCCCCTTCTCCCTCTCTTACCAGAACTTAGTACTTAAAGACTAGTGCTGCTGTCATTTA CACCACTGGGCGTTTCTTTTGGCTGAATTATTTCATAGCATTGTGTATCCAGTGTTTTTACTTGTGACAAGGATATAAGA TCTTCAAACTCGAAGGTGGAAATTATGGATTGATTCTTCATGGAACATGGTTACTTGTGTTTAAGTTAATTGAACTCCCT GTGAAGACACTGGATGAATAAATATGTGAAAAGGAAATAGATTAGTTGTGTGTTGTGTTGTCATTTTAAAAAGATTTTGA TCACTTCCACACACCTATTTTATGTGGTAAAGTTGCAGAAGTTCTGGTACTATTGTTGCCTATTAAAGTCTGAACTGGGC ACCTTTTGATAATATAAATTGTGAGGCAATTGATTGATGAGCAGTGACGAGTACAGCTGAAAATAACCTTGTTTTAGAAT CCATAGAATCATTTGTGTAAAAGCTCAGTTCATTTCAAGTAACTCTTACAAATTGGATTTACTCATTTTTCATTGGAGGC TAGTAACCTTAAAGAGCATTTCTTCTGTGTATTATTTTACCACCTTTACGGGATATGTGAATCTGATTAGTGGGAACCTG AAAGGTATATAAAAAATGCTGGGAAGTCAGCCTGAATTTAAAGTCTACTGATATCTCCTTCGTCTAAATGAATGGAGGAT AAACAAGTGCTGTTCAATACTTCTTTTAGGGTCTATGTAGCATAGTTAGAGTTTATGAAATATGATTTAAGGATCTGAAT TTATTTATTCAAGTAAACTAGCCAAACGGTTCACATTACTAAGTTACAAATTGATGCTTAAGACCAAAGTGTTTTTTCAT GACAGTGTCTTATATTATGAAGTCTTTACCTGATTTTTCTTGTGAGATACTGTCTGCTATGACACTTGTTTTTCCTGTCA CAGTTACTCACCAAACATCAAAGAAATCAAAGTGGTAAACCACCGTAAAGTCAGAAGAGCAAGATTGTACTATTTAAGAG ACAAGCTTCCCAGATTCTCCACTTTCAAATGATACGGTTACCACTTCTCATCCTGATCTTCTTCAAAGTAGTTGCTGATA TTGCAGGGCCATATTTTGGTTATTTCGTTTTGTTGTGTTGTAGAATATATCATTTTTCTTCCTCTAAATCTATCCTCCGA GAATTGGAAACAAGTGTATGTATGTTGCCCTTGATAATATTTGAAATTTGAAGTGTTCTCCCTTGCATTCCTTGGTATAG GATAGAAAGCCAAGCTCCTAAACAAACATTACTAAATATGACAGTCTAAGGAATGAGCATGTGTATCGATACCAGTTAAG TGCATTGTGAATGTATTTTTTTTTTTATCTCTATCCATAAAAAAAGGTATGTTCATTCTTGGTCTTAAAATGCATGCCAA TGTTTGTTTGTATAAGAAATGCTAGCAGCACTTGAACACACTCTTTAACACTTTCCATTTAATTGGTTTATTTTATAAAA AGTATCCAAATGTCTTGACTTTTTTACAAAATAGACCGATCATAAAGTAGTGTGTGGGAGAATATGTTCAGAAGAGTGTG TTGGTAGCACCCATCTTGTTTGTATTGGTGCCTATCCAATTATAACCTTAAAATGTGTCATTCTTATTTTCTAGGGTGTT TTCTTTTACGTGTCTATTTGTCTGGATCAAATATGCTTGCATTTGTGTCTGTAAGCAAAAAATTTGGACAAGATCTGTAT TACTTATTTAAAAGTCAGTGATGAAGCTGCCCCTGTCATGTTAGCTTCATTAATTAAAAACATTACTTTCAATTTGATCC TTATTATAAAAG
CDS sequence (LotjaGi2g1v0419900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCTCAAGTTTTTCTTCAGCAAGGGTTGTTACTGTTTGCCCCAAACCAATGTTCTCCAACCAAGCTCGGTGTATC TTCTTGCCTCGGTTCTCGTAACTTTCCGTTGATTTCCTCCACCTCAATTTCATGGCGTTGCAACAACCCTCTCTCTGCCA AACCCTCTTTTGTTGTCAGAGCTGACTCCAATGTCGACGCTGCTTCCGACAATGCTGGTGAAGTTCCAGAAGCTGAAGGT AGCGTTGATCAGGTTCCTGAAGATGGAGAAGCAGAACTAGCTTCGGATTCTGAGGTGGAGCAACCCAAGCCCCCTAGAAA GCAACGAGTCAAGCTTGGAGATGTTATGGGGATATTGAATCAGAGGGCAATTGAGGCATCGGAAAGCATGAGGCCGACTC CAGAAATTAGGACTGGAGATGTTGTGGAAATCAAACTGGAAGTTCCTGAGAACAAGCGTAGGTTGTCTATTTATAAAGGT ATAGTCATCTCAAGACAAAATGCTGGTATTCACACAACTATTCGAATCCGAAGGATTATTGCTGGCACAGGGGTTGAGAT TGTCTTCCCAATTTACTCACCAAACATCAAAGAAATCAAAGTGGTAAACCACCGTAAAGTCAGAAGAGCAAGATTGTACT ATTTAAGAGACAAGCTTCCCAGATTCTCCACTTTCAAATGA
Protein sequence (LotjaGi2g1v0419900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASQVFLQQGLLLFAPNQCSPTKLGVSSCLGSRNFPLISSTSISWRCNNPLSAKPSFVVRADSNVDAASDNAGEVPEAEG SVDQVPEDGEAELASDSEVEQPKPPRKQRVKLGDVMGILNQRAIEASESMRPTPEIRTGDVVEIKLEVPENKRRLSIYKG IVISRQNAGIHTTIRIRRIIAGTGVEIVFPIYSPNIKEIKVVNHRKVRRARLYYLRDKLPRFSTFK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 21 | 21 | - | – | |
| PANTHER | 1 | 226 | 226 | 3.7E-97 | – | |
| Phobius | 1 | 4 | 4 | - | – | |
| PANTHER | 1 | 226 | 226 | 3.7E-97 | ||
| Phobius | 5 | 15 | 11 | - | – | |
| Phobius | 16 | 21 | 6 | - | – | |
| Phobius | 22 | 226 | 205 | - | – | |
| MobiDBLite | 68 | 107 | 40 | - | – | |
| MobiDBLite | 81 | 95 | 15 | - | – | |
| PRINTS | 120 | 149 | 30 | 2.4E-9 | ||
| Pfam | 123 | 219 | 97 | 1.0E-30 | ||
| SUPERFAMILY | 123 | 226 | 104 | 1.5E-33 | ||
| TIGRFAM | 124 | 218 | 95 | 2.0E-28 | ||
| Gene3D | 127 | 223 | 97 | 9.5E-19 | ||
| PRINTS | 179 | 202 | 24 | 2.4E-9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Structural constituent of ribosome | The action of a molecule that contributes to the structural integrity of the ribosome. | ||
| Cellular component | Ribosome | An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins. | ||
| Biological process | Translation | The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. |
Expression pattern of LotjaGi2g1v0419900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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