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LotjaGi2g1v0420700.1

Overview

Field Value
Gene ID LotjaGi2g1v0420700
Transcript ID LotjaGi2g1v0420700.1
Lotus japonicus genome version Gifu v1.2
Description Ethylene-responsive transcription factor; TAIR: AT4G17500.1 ethylene responsive element binding factor 1; Swiss-Prot: sp|O80337|EF100_ARATH Ethylene-responsive transcription factor 1A; TrEMBL-Plants: tr|B3IX32|B3IX32_LOTJA Transcription factor AP2-EREBP; Found in the gene: LotjaGi2g1v0420700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:91861034..91863318) extracted from Lotus japonicus Gifu genome v1.2.

CCAATAGGTGGGGTGCCAAACCAAATTCCCAGGGTAAGGTAATCCTTCCCAGCCCAGGTAGCTTTTATATTTATTTATTT ACTTACCGGGGTCTTTGTCTGTTGGAATATTGACTTTAGAAGACACTTATCCACATTGCAATACCAACCTCACCCAATGC GTCCACAATCGCTGTATCCGTACCACTCCATGTCATTCTCACCCCACTTGCTGCATGCTTTCTACTTTCTAGCCTCCACT CATCCCATTCAACTTGTCTTTTTCTATTAAACAAAAACTACAAACTTTCTTGCATTTCAAGATTACAATGAAGCAAATTG TGTGCGCCGTAAAACTACTTTATGTCGATTGATGTCAAAAATTAGGCCAAACAATGGGAGGGAGAATTGAGCACGTGTGA TAAAACTCACCCAAGTTGCACCTTGCAACTTGCACATATGAAGGTTCCTAGAAGCTAAAACACAAGACCAACATATCAAG AAATTCACAGAACTAAATAAAACCTCAAATCACCATAAACTCCAATCCAATGATCTTTAACTTTTTATCCAAGTTCATGA ACCTGCACTCCTATAAATATCACTCTTCCCTCTTTGTTTTTGAAGTTTCAAAATTCATTTCAACACCTGCTTTCAAAAAT TAAAAAAAATAAAAAACCTTACTCAACTCTTTTCTTTCTCTCCAAACACAGCACAAGACACGAAAACATTACGGCCACAA CATGCACGGAGAAAGTACCTACGATTCCGATTTGGCCATCTTAGAATCCATTCGCCGCCACTTGCTTGGAGAATCCGATA TATGCATATTCGGAGCCCCGATTTCTAATTCGGGTAACCCGCCGGTTTACGTTCGGAGCTCCAGTTTCAGCAAACTGTAC CCGTGTCTGACTGACAATTGGGGCGAGCTTCCACTCAAGGAAGACGATTCAGAGGATATGATGCTCTACGGCGTGCTTCG CGACGCCGTCAACGAGGGGTGGGTCCCATCTCTCGATTCATCGGGTTTTCTTCCCGTCAAATCTGAACCGGAGCTTTTCC CGGCAGTGCAGAGCCCACCGGAGCGGGTTGTTCCGGCTCCGGTGATTCCTAAGGAGGAAGTCATGCCGGCGGCTGCTCCG GCGAAGGGGAAGCATTACCGCGGCGTGAGGCAACGGCCGTGGGGGAAGTTCGCGGCGGAGATTCGTGATCCGGCGAAGAA TGGAGCTAGGGTTTGGCTCGGAACGTTTGAAACGGCTGAGGACGCTGCGTTGGCTTACGATCGGGCTGCGTACAGGATGC GCGGGTCGCGTGCTCTGCTGAATTTCCCTCTCCGGGTTAACTCTGGTGAGCCAGACCCGGTTCGTGTGCCGTCGAAGCGG TCATTGTCTTCTTCTTCTTCTTGTTCGTCGTCGTCATCGTCGGAGAGTGGTTTGACGGCGAAGCGGAGGAAGAAGGTGGT GGGGCCAACGGTGCCTGTGGTGACTGCTCAAGTGGGATTAAAAACAGAACAAGTGGAGGAGTCAAGTTGCAAAGTGCACA CGTGGAGAACAGTTATTGGTGAATTGAAGGCTGACGTGGAATGCAACTTGCTTATGTAATTATCTTATTCTGAGAGATGA ACACTCAACCATCCAACAAATTTTGGAAATTGGAAGCTGTTACAAAAATAATGCACCAAGAAATTGAGAGATGGATTGGG ATGGTGACTCTAGTGGGAGTGGCACAATCAAAAGGGAAAGACACAATCAAAAGCCTTAAATAGGAATTAAAGAAAACAAA TGAAAAAAAAAACAGCTAGGGGATGTTTTGTTTGGGTTTGTGAACATAAAATTTGTTATTTTTTTGTTCAACATTTGTGA ATTGTGTTACATGATGAAGCCTGAACTCTTTGTGCCCAAATTGACATGCTCCTTCCAAATAAAATTTTCCCACTTTAGAT GATAAAATAGATATTGATATTATTGTTTGACAAGACGTCCAAAAGAATACTGTTAAATCTAAAACATAAAAATTGCACAT CATCATAACTGTATTGACTTTTCCTTTATTATTTAACAATATTAATAAAGGAAAAATTATTGGAATTATGATAAACTTCA AAGGAGATGGGTGAATTTTCTCAATCTAAATAAGCCACTCTCAAGATATATGGTAGTGGTGATCGACACAAACATTTAAT GTTGCGATATGTGGAGGTTGGAGTTGGAGCAATAAGGGAGGTTGTGATCTACACGCGTTAGTCAAAGTTGGAGCGAAAGG GGATCCAAGGGTTTTATTTCGCCTGTTTTTTAAGGTTGGTGGTGG
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0420700.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCACGGAGAAAGTACCTACGATTCCGATTTGGCCATCTTAGAATCCATTCGCCGCCACTTGCTTGGAGAATCCGATAT ATGCATATTCGGAGCCCCGATTTCTAATTCGGGTAACCCGCCGGTTTACGTTCGGAGCTCCAGTTTCAGCAAACTGTACC CGTGTCTGACTGACAATTGGGGCGAGCTTCCACTCAAGGAAGACGATTCAGAGGATATGATGCTCTACGGCGTGCTTCGC GACGCCGTCAACGAGGGGTGGGTCCCATCTCTCGATTCATCGGGTTTTCTTCCCGTCAAATCTGAACCGGAGCTTTTCCC GGCAGTGCAGAGCCCACCGGAGCGGGTTGTTCCGGCTCCGGTGATTCCTAAGGAGGAAGTCATGCCGGCGGCTGCTCCGG CGAAGGGGAAGCATTACCGCGGCGTGAGGCAACGGCCGTGGGGGAAGTTCGCGGCGGAGATTCGTGATCCGGCGAAGAAT GGAGCTAGGGTTTGGCTCGGAACGTTTGAAACGGCTGAGGACGCTGCGTTGGCTTACGATCGGGCTGCGTACAGGATGCG CGGGTCGCGTGCTCTGCTGAATTTCCCTCTCCGGGTTAACTCTGGTGAGCCAGACCCGGTTCGTGTGCCGTCGAAGCGGT CATTGTCTTCTTCTTCTTCTTGTTCGTCGTCGTCATCGTCGGAGAGTGGTTTGACGGCGAAGCGGAGGAAGAAGGTGGTG GGGCCAACGGTGCCTGTGGTGACTGCTCAAGTGGGATTAAAAACAGAACAAGTGGAGGAGTCAAGTTGCAAAGTGCACAC GTGGAGAACAGTTATTGGTGAATTGAAGGCTGACGTGGAATGCAACTTGCTTATGTAA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0420700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MHGESTYDSDLAILESIRRHLLGESDICIFGAPISNSGNPPVYVRSSSFSKLYPCLTDNWGELPLKEDDSEDMMLYGVLR DAVNEGWVPSLDSSGFLPVKSEPELFPAVQSPPERVVPAPVIPKEEVMPAAAPAKGKHYRGVRQRPWGKFAAEIRDPAKN GARVWLGTFETAEDAALAYDRAAYRMRGSRALLNFPLRVNSGEPDPVRVPSKRSLSSSSSCSSSSSSESGLTAKRRKKVV GPTVPVVTAQVGLKTEQVEESSCKVHTWRTVIGELKADVECNLLM
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31190:SF143
1 241 241 1.0E-106 –
PANTHER
PTHR31190
1 241 241 1.0E-106 –
Gene3D
G3DSA:3.30.730.10
137 199 63 1.3E-32
IPR036955
CDD
cd00018
137 196 60 9.82849E-33
IPR001471
SMART
SM00380
138 202 65 1.3E-39
IPR001471
Pfam
PF00847
138 188 51 2.1E-13
IPR001471
ProSiteProfiles
PS51032
138 196 59 24.21
IPR001471
SUPERFAMILY
SSF54171
138 198 61 3.14E-23
IPR016177
PRINTS
PR00367
139 150 12 5.8E-11
IPR001471
PRINTS
PR00367
162 178 17 5.8E-11
IPR001471
MobiDBLite
mobidb-lite
203 237 35 - –
MobiDBLite
mobidb-lite
211 230 20 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0003700
Molecular function DNA-binding transcription factor activity A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0420700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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