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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0421500 |
| Transcript ID | LotjaGi2g1v0421500.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribosomal protein L15; TAIR: AT4G16720.1 Ribosomal protein L23/L15e family protein; Swiss-Prot: sp|O82528|RL15_PETHY 60S ribosomal protein L15; TrEMBL-Plants: tr|I3SAW7|I3SAW7_LOTJA Ribosomal protein L15; Found in the gene: LotjaGi2g1v0421500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:91959822..91961713) extracted from Lotus japonicus Gifu genome v1.2.
CCCAGATTACGAAGAAGAGAAGCCCAATGAAACAGACAAGAGCTTCTGTAAAAGGTTTCGACTCGGCCACAAAACCCTAT TAACTCCTGGTCATAGTTGCCGTAGGTGCAGCGGAACCCGTTCCCTGAGGAGGCTGCGCGATGGGTACGGTGTCGATTCC TTTGTCATCTCCGTTCTAGATTTCTCATTCTTAGCTCAATGTATTTGTTTTTATTTGATTTGGTGTTGGAGTTTGATATT TTTTGGTTGATTTGGTTGGCCACAGGTGCCTACAAGTATGTTTCAGAGCTATGGCGCAAGAAACAGTCTGATGTTATGCG CTTCTTGCAGCGGGTGAGGTGCTGGGAGTATCGCCAACAACCTTCCATTGTTCGCTTGACAAGGCCGACTCGCCCTGACA AGGCTCGTCGCTTGGGCTATAAGGCTAAGCAGGTAACAATTTTTTCTCATGTTTTATTCTCATTGTAATTTTATTGTTAA GAGGGACAAATTTTACTTGTGTTTATTTTGGTTCATATACTGTACATAGTTGGGTGCTTCCTGAGGTCAGCCACTGTAAA CTAGACTATTGACCACTCTGGTTGATTGAATTGTCTTTCTTGTCAATTGTACTTTTATCACTAGTTGGCGCATTCGGTTT TGCCATTTTCATACCTCCTGTTTATGATTTCATTTACATGAGTTTTTGAATAGTTTTCTTTGTCATTGTAAAAGAATGTC TCATGATTTCTCCTGGTAAATGCATACATCACATTATGTCATAGATGTGGAAGAATTGAAATAGTGCCAATTGTCTGTCC TTGTAGAGCTGTTACCCATGCCTCATTTGTTGTGGTCTAGTGTTGATTGTGATTATGATATTGTAGGGTTATGTGGTTTA CCGGGTTCGTGTTCGGAGGGGTGGTAGAAAGAGACCAGTTTCCAAAGGTATTGTTTATGGGAAGCCCACAAACCAGGGTG TTACCCAACTGAAATTTCAGCGGAGCAAGAGGTCCGTTGCTGAGGAGCGAGCTGGACGGAAGCTGGGTGGACTCAGGGTT CTCAATTCGTACTGGGTCAATGAGGTTTGTTATTGTACTAGTATTTTTGAATTTGAAACCTGTTTGTGAATCCTGTGTTT GTTGATTGGCTGTACTTTTCTATCAGGACTCCACTTATAAATACTTTGAGATAATTCTGGTGGATATTGCTCATACTGCA ATTAGAAATGACCCAAGAATCAACTGGCTCTGCAAGCCAGTGCACAACCACAGGGAGCTGCGCGGGAACACCTCTGCAGG GAAAAGCAACAGGGGTTTACGGGGCAGAGGTCATCGGTACCACAAAGCACGACCATCCCGCAGGGCAACCTGGAAGAGAA ACAACTCCCTATCCCTTCGCCGTTACCGCTGATTCTTTTGCAATTATTTTGTTTTTGCTTCATTTTCTGGATACTATATT GAGGACATGTCATTTTACATTTTGACTGGTATTCTATGTTTTGGAACACCGAAATTATTGTTCCCCATGAATCTGAGTTT TGATCGTTCACTGGAAATTAATAGCTGGTGTTAGTTATATCTGCTCTGCCCTATTGAGTTGGGCAACTTGGTTTTGATAG TATTCCTGGTCCCTGGATGATTTAATATTTTTTTTAAAGATTGCTCAGTTTCTGGTGTCTTGGATTGGTTTTGTTGTGCT TCACTAAGAAAATAATCTGAGTCCAAAAATAACACTAGTAATAATATGATTTAAGAAGATTATGAGTCCAAAAATAACCC TATAGTTATAATATTATTTCCTATTACCTCTTTCATCTCTATCCTTTTCTACTACACTGCAGCCATCAGAAATCACCATG TCGGCCAATTTTGCTCCCAAGTCGCTGGCTATGTGAGCAGTGCACAACTTCT
CDS sequence (LotjaGi2g1v0421500.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTGCCTACAAGTATGTTTCAGAGCTATGGCGCAAGAAACAGTCTGATGTTATGCGCTTCTTGCAGCGGGTGAGGTG CTGGGAGTATCGCCAACAACCTTCCATTGTTCGCTTGACAAGGCCGACTCGCCCTGACAAGGCTCGTCGCTTGGGCTATA AGGCTAAGCAGGGTTATGTGGTTTACCGGGTTCGTGTTCGGAGGGGTGGTAGAAAGAGACCAGTTTCCAAAGGTATTGTT TATGGGAAGCCCACAAACCAGGGTGTTACCCAACTGAAATTTCAGCGGAGCAAGAGGTCCGTTGCTGAGGAGCGAGCTGG ACGGAAGCTGGGTGGACTCAGGGTTCTCAATTCGTACTGGGTCAATGAGGACTCCACTTATAAATACTTTGAGATAATTC TGGTGGATATTGCTCATACTGCAATTAGAAATGACCCAAGAATCAACTGGCTCTGCAAGCCAGTGCACAACCACAGGGAG CTGCGCGGGAACACCTCTGCAGGGAAAAGCAACAGGGGTTTACGGGGCAGAGGTCATCGGTACCACAAAGCACGACCATC CCGCAGGGCAACCTGGAAGAGAAACAACTCCCTATCCCTTCGCCGTTACCGCTGA
Protein sequence (LotjaGi2g1v0421500.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVSKGIV YGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWVNEDSTYKYFEIILVDIAHTAIRNDPRINWLCKPVHNHRE LRGNTSAGKSNRGLRGRGHRYHKARPSRRATWKRNNSLSLRRYR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 204 | 204 | 2.2E-128 | – | |
| PANTHER | 1 | 204 | 204 | 2.2E-128 | ||
| SUPERFAMILY | 1 | 195 | 195 | 2.01E-91 | ||
| Gene3D | 1 | 197 | 197 | 9.0E-107 | ||
| Pfam | 2 | 190 | 189 | 5.3E-92 | ||
| SMART | 2 | 193 | 192 | 3.5E-136 | ||
| ProSitePatterns | 46 | 69 | 24 | - | ||
| MobiDBLite | 160 | 204 | 45 | - | – | |
| MobiDBLite | 173 | 190 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Structural constituent of ribosome | The action of a molecule that contributes to the structural integrity of the ribosome. | ||
| Cellular component | Ribosome | An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins. | ||
| Biological process | Translation | The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. |
Expression pattern of LotjaGi2g1v0421500.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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