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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0423500 |
| Transcript ID | LotjaGi2g1v0423500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger family protein; TAIR: AT3G60580.1 C2H2-like zinc finger protein; Swiss-Prot: sp|Q9M202|ZAT9_ARATH Zinc finger protein ZAT9; TrEMBL-Plants: tr|I3SKS1|I3SKS1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0423500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:92160418..92161714) extracted from Lotus japonicus Gifu genome v1.2.
CTCCTCTTAAGTACCCCAAATTCCCCTTAACAAAACAAAACAAAACAAAACAAAACACAAGCATTTCTTTCTTTCCATTG TGCCTCTCTTTCTCTTCTCTTCTCTGGTTCCAACCCAAATGGAGAGGTACAAATGCAAGCTTTGCTCCAGAAAATTCATC AATGGCAAAGCACTAGGTGGTCACATGAAGGCTCACTTAGCCCCACTTCCCCTTCCTCCCAAGCCTCAACCACTCTCTAA CCATAACCACACTGCATCCTTCTCATATTCACTTTCTTCTTCTGAAGAAGAAGAAGAGGCAGAGGAAAAGCCTCTGATTT ATGGGTTGAGAGAAAACCCAAAAAAAAGTTTCAGACTTTCGGATCCTGAGTCTGTTGTGCAAGACAGAGAGAGCGAGACT GAGTCAAAGAACCCAACTCGGAGACGATCCAAACGAACACGAAAACCTCTTCAGAATCCTAAACTGATGAGCTTCATGGA TTCACCAGAGCCTGTGAGCTCTGTTTCTGATACTTCCCCTGACGAAGATGTTGCCATGTGCCTCATGATGCTCTCCAGAG ACAGTTGGAGAATCAGCAACAATGTTGATGTTAACGTTGTTGTTGTTGTCAAAGAAGAAGAAGAAATGAAATCAGAGGGG TTTCCTGAGATCAACTTCAGGAAGGTTCGTGGGAAGCACCAATGTGAAAACTGTGGGAAGAAGTTTCGATCTTCTGGAGC ATTGGGGAGTCACAAAAGCATTTGTGTTGGTGATGATGAAGAAGTCAGTGATGATAAAATCTTCCAATGCCCATTTTGTG AGAAGGTTTTTGGGTCTGGTCAAGCACTTGGTGGACACAAGAGATCTCACCTTTACCCATCTTCATCTTCAACTGCTAGT GGGTTCAAACAGAGCTTCTTCGATCTCAACTTGCCAGCTTCACCAGAAGAAGATGATGACCTCAGTGTTGTTTCTGATGC CTGATGATTTGGCTTCATTCATTTAGCTTCATTGATCTGGTTAATGATGATTATTAGTTGTTTTCTTCAATTGGGTAAAG TTACATTATTTGTAATTTTTTCCTTCTTTAAAAGTAGTTAAGAGCAGTTCATTATGGTTAGTGTTAGATCAAATGCTTTT GATGATGGTACAATTATAGTTTATGATTAATGTTTTCACCAACTGCTTTAGAGTTTCATGCTAAATTGACAGCTATTAGA TGATTTTTCTTCATTGTACTCAACTTCTAGCATCTTTTGTATCCCTTATAGTTTCTCAGAGTCAATTTCTTCACTAAAAG CTAATTACATAATTTCC
CDS sequence (LotjaGi2g1v0423500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGAGGTACAAATGCAAGCTTTGCTCCAGAAAATTCATCAATGGCAAAGCACTAGGTGGTCACATGAAGGCTCACTT AGCCCCACTTCCCCTTCCTCCCAAGCCTCAACCACTCTCTAACCATAACCACACTGCATCCTTCTCATATTCACTTTCTT CTTCTGAAGAAGAAGAAGAGGCAGAGGAAAAGCCTCTGATTTATGGGTTGAGAGAAAACCCAAAAAAAAGTTTCAGACTT TCGGATCCTGAGTCTGTTGTGCAAGACAGAGAGAGCGAGACTGAGTCAAAGAACCCAACTCGGAGACGATCCAAACGAAC ACGAAAACCTCTTCAGAATCCTAAACTGATGAGCTTCATGGATTCACCAGAGCCTGTGAGCTCTGTTTCTGATACTTCCC CTGACGAAGATGTTGCCATGTGCCTCATGATGCTCTCCAGAGACAGTTGGAGAATCAGCAACAATGTTGATGTTAACGTT GTTGTTGTTGTCAAAGAAGAAGAAGAAATGAAATCAGAGGGGTTTCCTGAGATCAACTTCAGGAAGGTTCGTGGGAAGCA CCAATGTGAAAACTGTGGGAAGAAGTTTCGATCTTCTGGAGCATTGGGGAGTCACAAAAGCATTTGTGTTGGTGATGATG AAGAAGTCAGTGATGATAAAATCTTCCAATGCCCATTTTGTGAGAAGGTTTTTGGGTCTGGTCAAGCACTTGGTGGACAC AAGAGATCTCACCTTTACCCATCTTCATCTTCAACTGCTAGTGGGTTCAAACAGAGCTTCTTCGATCTCAACTTGCCAGC TTCACCAGAAGAAGATGATGACCTCAGTGTTGTTTCTGATGCCTGA
Protein sequence (LotjaGi2g1v0423500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MERYKCKLCSRKFINGKALGGHMKAHLAPLPLPPKPQPLSNHNHTASFSYSLSSSEEEEEAEEKPLIYGLRENPKKSFRL SDPESVVQDRESETESKNPTRRRSKRTRKPLQNPKLMSFMDSPEPVSSVSDTSPDEDVAMCLMMLSRDSWRISNNVDVNV VVVVKEEEEMKSEGFPEINFRKVRGKHQCENCGKKFRSSGALGSHKSICVGDDEEVSDDKIFQCPFCEKVFGSGQALGGH KRSHLYPSSSSTASGFKQSFFDLNLPASPEEDDDLSVVSDA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 281 | 281 | 4.8E-103 | – | |
| PANTHER | 1 | 281 | 281 | 4.8E-103 | – | |
| SignalP_GRAM_POSITIVE | 1 | 27 | 27 | - | – | |
| SUPERFAMILY | 3 | 29 | 27 | 3.93E-5 | ||
| Pfam | 3 | 28 | 26 | 6.5E-7 | – | |
| ProSiteProfiles | 4 | 31 | 28 | 11.074 | ||
| SMART | 4 | 26 | 23 | 0.041 | ||
| ProSitePatterns | 6 | 26 | 21 | - | ||
| MobiDBLite | 29 | 133 | 105 | - | – | |
| MobiDBLite | 39 | 54 | 16 | - | – | |
| MobiDBLite | 64 | 100 | 37 | - | – | |
| Gene3D | 184 | 244 | 61 | 6.7E-11 | – | |
| SMART | 187 | 207 | 21 | 31.0 | ||
| ProSiteProfiles | 187 | 214 | 28 | 9.951 | ||
| Pfam | 187 | 206 | 20 | 0.012 | ||
| SUPERFAMILY | 187 | 244 | 58 | 2.7E-8 | ||
| SMART | 222 | 244 | 23 | 0.016 | ||
| ProSiteProfiles | 222 | 244 | 23 | 9.868 | ||
| Pfam | 222 | 244 | 23 | 7.9E-10 | – | |
| ProSitePatterns | 224 | 244 | 21 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi2g1v0423500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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