Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0424800 |
| Transcript ID | LotjaGi2g1v0424800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nitrate transporter 1.1; TAIR: AT1G12110.1 nitrate transporter 1.1; Swiss-Prot: sp|Q05085|PTR7_ARATH Protein NRT1/ PTR FAMILY 6.3; TrEMBL-Plants: tr|G7JW11|G7JW11_MEDTR Peptide/nitrate transporter; Found in the gene: LotjaGi2g1v0424800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:92269172..92272564) extracted from Lotus japonicus Gifu genome v1.2.
GAAGACATAAACAAATCCTAGTCATCTAAGGCCAAAACCTTGGGCCTGGGGGTATATAAAGGCCAAAACCTGAATCCCCT CTTCCATACTCATCCAACTTCCTTTTCTCTGCAGTAACCAACCATCTTAACAGAGTTTCATATGTCTTTCTCTGCAATGG GGACACTCCCTACAACACAAGGAAAAACCATCCCAGATGCGTGGGATTACAAGGGCCGCCCTGCAGAGAGGTCCAAAACC GGTGGTTGGATTGCAGCCGCCATGATTTTAGGTACTCAATCACACAATTTGGTGAATTAACGTGCATAAACAGTCTTATT GATCAGATTAATTAGCATGGTTAATTTGTTTTTGTTATGATCAGGAGGAGAAGTGATGGAGAGGTTAACAACACTAGGTA TTGCTGTCAATTTAGTGACATATTTGACGGGTACAATGCATTTGGGCAATGCTGTCTCCGCCAATGTTGTCACCAACTTC TTGGGAACCTCCTTCATGCTCTGTTTATTGGGTGGATTTTTAGCAGATACCTTTCTCGGAAGGTCCGAACCATACCTTTC TCTGATTTTACTACATCATTCTTTATTACATGACTCATCAGATCACCCTTTTTTTTTATCATGGTACATACATTTACGAG AAATATAAAATTTGTATAATGAGAAATGAGTGGCAGTGCAATCATTTTAGTGGACAAGAAAGATAAGATTTCGTCATTTT ATTTTATTTTATTCAAATCACATTTATTAGTTTGTGTATGGAGTAATGATATATACACACATCTCATTTTTAAAACACTT CATTTTCACCTCTTTTTGTTTCTATCTCTCTCCTCTTACCATCTATCACATCTCATACTTTCTCTCCCTTACTTTTTCTT TTCTTTCTATCTCTCTCATCATTCCACCTCACACACCTCTCTTTAGAGGTGTGTGAGTAACATTACTCTTGTTTATGTGT TCTTTCAGTCATTACTTGACTTGTTTACCTCATTGTTTACTAAATTTTTCAATTCCTTCTTTGACAGATACCTCAATATC GCTGTCTTTGCAGCTGTTCAAGCAACTGTAAGATCGAGGACCACAATCTTAATTTATTATTGTTTCAATCATTTTTTTGC CAAAAGAGTAATTAAGTTAATTCCATGATTTTATCCAATACAGGGTGTTACTATCTTGACGATATCAACTATAATTCCGA GCTTACATCCTCCAAAGTGCAGTGAAGATCACACTGCGCCATGCGTGCAAGCAGACAGCAATCAGCTGACGGTGCTGTAT TTAGCGCTTTACGTGACGGCGCTCGGCACCGGCGGGTTGAAATCCAGCGTGTCAGGATTCGGGTCAGACCAGTTTGATGA TTCAGACGATGAAGAGAAGAAGGGAATGATCAAATTCTTCGACTGGTTCTACTTCTTCGTGAGCATTGGGTCTCTGGCTG CAGTGACAGCTCTTGTTTACATTCAAGACAACGTGGGGAGGATATGGGGTTATGGAATATGTGCCTGTGCCATTGTGTTC GCGCTAGTTGTGTTCTTGTTGGGGACCAAGAAGTACAGGTTTAAGAAACCGGTGGGGAGTCCACTGACTCAGATTGCAGA GGTGGTTGTGGCGGCTTGGAGGAAGAGGCACTTGCAAGTGCCCTCTGATTCTTCATTGCTGTTTGATGACGATGATGGCA TGTTAGATGAATCAGGAAAGACCAAGAAGCAGAGGTTGCCGCATAGTGAGCAGTTCAGGTAACAATTCTCACTCTAATTA TGGATTTATGGCTCTAACTTTCTTTCCACCACTCAGTTTTCTAAAAATAAATTATATCATAAGAATTCATCCTAGACTTT CTCAATCCATATATCTCTCAACTCTTACCCGATCATTGTTGAGAATTTAAAATTTTCATTCAATTGTCATATTCCGTGTG CTGGAAATAATGTTTGCTTAAACTTTTGTATTGATCATTTAGGGGCCCTAAATATTATAGCTAGCATGTCTTACGGTTAC GGTTACAACTCATAATTCATAGGGGAATCTGAAGCCAATCAAGCCATAACATGTCATGAATTAAGCTATAATTTATTTAA CTTTTCATCAAAATAGATATGTTTGGCTACTGAGCTTATTTTATTGTCTCATACCTTATTTTTAAAGCTACTTGGAGTAT TGGAGTAGTTTATAACTTCCTATATGGTTTTTCATTTTAGTCTAATTCCATTGATATCTTCTTTATTAAAAAAATATATA AAAAATAGAATTCTCAATATTTTTAATTATTAAACTAACTAATTTACTAATATTCACAAGCAGATTCTTGGACAGAGCAG CAATCAAGGACACAGAAAATGCAGGTGGAATCACAAAAAAGAAGAAATGGTATCTCACTACTTTAACAGACGTAGAAGAA GTAAAACAGATCGTCAGAATGCTCCCAATTTGGGCCACCACCATCATGTTCTGGTCGATCCACGCTCAAATGACCACATT CTCAGTCTCCCAAGCTACCACCATGAACTGCCACATCGGATCATTCGAAATCCCCGCCGCATCAATGACTGTCTTCTTAA TCGGAACCATCCTCTTAACTGTCCCCTTCTATGACCGCTTCATTGCTCCGGTGGCCAAAAAAGTACTCAAAAACCCACAA GGATTCACCCCTTTGCAGCGCGTAGGTGTCGGTTTAGTCCTCTCCGTCATATCAATGGTGGCGGCAGCGGTCGTTGAACT AAAACGGTTGAGATTCGCTGAATCACATGGTTTTATCGATACTCCAAAGGCGAAGATGTCACTGAGCGTGTTTTGGTTGG TCCCACAGTTCTTCTTTGTTGGGTCAGGGGAGGCATTTATGTACATGGGCCAGTTGGATTTTTTCCTTAGAGAGTGCCCT AAAGGGATGAAAACCATGAGCACTGGGCTTTTCTTAAGCACATTGTCATTGGGCTTTTTCTTTAGCTCATTGTTGGTGAC TATAGTAAACAAGTTGACAGGCCCGAGTCAACCCTGGATTGCAGATAATCTTAATAGAGGGAGGCTCCATGACTTTTATT GGCTCTTGGCTATTCTGAGTGCTATAAATGTGGTGATTTATTTGGGTTGTGCTAAGTGGTATGTTTACAAGGAGAAGAGG CTTGCTGAGCAGGGTATAGAATTGGAAGAAACAGATGTTGCTACTTTTCATGCATAGGATAGGAGGAATGAAATGAATTC TATCTATAAGCCATTTTTTTCTTCCTCTTCTTTGTAACAATAATAACATGCTGCTTTGCTTCCACTGTATTAATCTTATC AAGTACTTGTTTCCTAAGGATACCAGTTAAGAGACATTTAATATATACTGTTAAATGTATGTACTTATTTAAAAATTAAA AAGTAAATGAAAGAAGTTTTTATATTGTGAGAA
CDS sequence (LotjaGi2g1v0424800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTTTCTCTGCAATGGGGACACTCCCTACAACACAAGGAAAAACCATCCCAGATGCGTGGGATTACAAGGGCCGCCC TGCAGAGAGGTCCAAAACCGGTGGTTGGATTGCAGCCGCCATGATTTTAGGAGGAGAAGTGATGGAGAGGTTAACAACAC TAGGTATTGCTGTCAATTTAGTGACATATTTGACGGGTACAATGCATTTGGGCAATGCTGTCTCCGCCAATGTTGTCACC AACTTCTTGGGAACCTCCTTCATGCTCTGTTTATTGGGTGGATTTTTAGCAGATACCTTTCTCGGAAGATACCTCAATAT CGCTGTCTTTGCAGCTGTTCAAGCAACTGGTGTTACTATCTTGACGATATCAACTATAATTCCGAGCTTACATCCTCCAA AGTGCAGTGAAGATCACACTGCGCCATGCGTGCAAGCAGACAGCAATCAGCTGACGGTGCTGTATTTAGCGCTTTACGTG ACGGCGCTCGGCACCGGCGGGTTGAAATCCAGCGTGTCAGGATTCGGGTCAGACCAGTTTGATGATTCAGACGATGAAGA GAAGAAGGGAATGATCAAATTCTTCGACTGGTTCTACTTCTTCGTGAGCATTGGGTCTCTGGCTGCAGTGACAGCTCTTG TTTACATTCAAGACAACGTGGGGAGGATATGGGGTTATGGAATATGTGCCTGTGCCATTGTGTTCGCGCTAGTTGTGTTC TTGTTGGGGACCAAGAAGTACAGGTTTAAGAAACCGGTGGGGAGTCCACTGACTCAGATTGCAGAGGTGGTTGTGGCGGC TTGGAGGAAGAGGCACTTGCAAGTGCCCTCTGATTCTTCATTGCTGTTTGATGACGATGATGGCATGTTAGATGAATCAG GAAAGACCAAGAAGCAGAGGTTGCCGCATAGTGAGCAGTTCAGATTCTTGGACAGAGCAGCAATCAAGGACACAGAAAAT GCAGGTGGAATCACAAAAAAGAAGAAATGGTATCTCACTACTTTAACAGACGTAGAAGAAGTAAAACAGATCGTCAGAAT GCTCCCAATTTGGGCCACCACCATCATGTTCTGGTCGATCCACGCTCAAATGACCACATTCTCAGTCTCCCAAGCTACCA CCATGAACTGCCACATCGGATCATTCGAAATCCCCGCCGCATCAATGACTGTCTTCTTAATCGGAACCATCCTCTTAACT GTCCCCTTCTATGACCGCTTCATTGCTCCGGTGGCCAAAAAAGTACTCAAAAACCCACAAGGATTCACCCCTTTGCAGCG CGTAGGTGTCGGTTTAGTCCTCTCCGTCATATCAATGGTGGCGGCAGCGGTCGTTGAACTAAAACGGTTGAGATTCGCTG AATCACATGGTTTTATCGATACTCCAAAGGCGAAGATGTCACTGAGCGTGTTTTGGTTGGTCCCACAGTTCTTCTTTGTT GGGTCAGGGGAGGCATTTATGTACATGGGCCAGTTGGATTTTTTCCTTAGAGAGTGCCCTAAAGGGATGAAAACCATGAG CACTGGGCTTTTCTTAAGCACATTGTCATTGGGCTTTTTCTTTAGCTCATTGTTGGTGACTATAGTAAACAAGTTGACAG GCCCGAGTCAACCCTGGATTGCAGATAATCTTAATAGAGGGAGGCTCCATGACTTTTATTGGCTCTTGGCTATTCTGAGT GCTATAAATGTGGTGATTTATTTGGGTTGTGCTAAGTGGTATGTTTACAAGGAGAAGAGGCTTGCTGAGCAGGGTATAGA ATTGGAAGAAACAGATGTTGCTACTTTTCATGCATAG
Protein sequence (LotjaGi2g1v0424800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSFSAMGTLPTTQGKTIPDAWDYKGRPAERSKTGGWIAAAMILGGEVMERLTTLGIAVNLVTYLTGTMHLGNAVSANVVT NFLGTSFMLCLLGGFLADTFLGRYLNIAVFAAVQATGVTILTISTIIPSLHPPKCSEDHTAPCVQADSNQLTVLYLALYV TALGTGGLKSSVSGFGSDQFDDSDDEEKKGMIKFFDWFYFFVSIGSLAAVTALVYIQDNVGRIWGYGICACAIVFALVVF LLGTKKYRFKKPVGSPLTQIAEVVVAAWRKRHLQVPSDSSLLFDDDDGMLDESGKTKKQRLPHSEQFRFLDRAAIKDTEN AGGITKKKKWYLTTLTDVEEVKQIVRMLPIWATTIMFWSIHAQMTTFSVSQATTMNCHIGSFEIPAASMTVFLIGTILLT VPFYDRFIAPVAKKVLKNPQGFTPLQRVGVGLVLSVISMVAAAVVELKRLRFAESHGFIDTPKAKMSLSVFWLVPQFFFV GSGEAFMYMGQLDFFLRECPKGMKTMSTGLFLSTLSLGFFFSSLLVTIVNKLTGPSQPWIADNLNRGRLHDFYWLLAILS AINVVIYLGCAKWYVYKEKRLAEQGIELEETDVATFHA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 50 | 50 | - | – | |
| PANTHER | 11 | 591 | 581 | 0.0 | – | |
| PANTHER | 11 | 591 | 581 | 0.0 | ||
| SUPERFAMILY | 26 | 576 | 551 | 8.24E-26 | ||
| CDD | 36 | 573 | 538 | 0.0 | – | |
| Phobius | 51 | 70 | 20 | - | – | |
| Phobius | 71 | 75 | 5 | - | – | |
| TMHMM | 74 | 96 | 23 | - | – | |
| Phobius | 76 | 97 | 22 | - | – | |
| Phobius | 98 | 103 | 6 | - | – | |
| Phobius | 104 | 130 | 27 | - | – | |
| Pfam | 106 | 539 | 434 | 1.5E-115 | ||
| TMHMM | 109 | 131 | 23 | - | – | |
| Phobius | 131 | 149 | 19 | - | – | |
| Phobius | 150 | 168 | 19 | - | – | |
| TMHMM | 151 | 173 | 23 | - | – | |
| Phobius | 169 | 196 | 28 | - | – | |
| TMHMM | 194 | 216 | 23 | - | – | |
| Phobius | 197 | 217 | 21 | - | – | |
| Phobius | 218 | 222 | 5 | - | – | |
| TMHMM | 220 | 242 | 23 | - | – | |
| Phobius | 223 | 242 | 20 | - | – | |
| Phobius | 243 | 343 | 101 | - | – | |
| Phobius | 344 | 364 | 21 | - | – | |
| Phobius | 365 | 383 | 19 | - | – | |
| TMHMM | 379 | 401 | 23 | - | – | |
| Phobius | 384 | 404 | 21 | - | – | |
| Phobius | 405 | 424 | 20 | - | – | |
| Phobius | 425 | 445 | 21 | - | – | |
| TMHMM | 425 | 447 | 23 | - | – | |
| Phobius | 446 | 469 | 24 | - | – | |
| TMHMM | 468 | 490 | 23 | - | – | |
| Phobius | 470 | 489 | 20 | - | – | |
| Phobius | 490 | 509 | 20 | - | – | |
| TMHMM | 510 | 532 | 23 | - | – | |
| Phobius | 510 | 532 | 23 | - | – | |
| Phobius | 533 | 551 | 19 | - | – | |
| Phobius | 552 | 575 | 24 | - | – | |
| TMHMM | 553 | 575 | 23 | - | – | |
| Phobius | 576 | 598 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi2g1v0424800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…