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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0425100 |
| Transcript ID | LotjaGi2g1v0425100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nitrate transporter 1.1; TAIR: AT1G12110.1 nitrate transporter 1.1; Swiss-Prot: sp|Q05085|PTR7_ARATH Protein NRT1/ PTR FAMILY 6.3; TrEMBL-Plants: tr|G7JW09|G7JW09_MEDTR Peptide/nitrate transporter; Found in the gene: LotjaGi2g1v0425100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:92287494..92291041) extracted from Lotus japonicus Gifu genome v1.2.
AACCATTTTATAAGTATTATAATAACGTAAAGAACAATATGCATCAAATATTGATTAATATCACTGTTGTTATTAACCTA CATGTCCTAATCGCTTGCAGTCGATTCTTGCTCCGTACCCTTAGTGTCTGTCTATATATAAAGGCCAAAACCTCTGCCGT CTGCTCCTCGTACCATTCATTATACCAACTACTTCTTCTTTCATCTTTCACGTACCTTCAATGGCCACTCTGCCCACAAC AACACGAGGGAAAACTGTCCCTGATGCTTGTGACTACCAAGGCCTCCCAGCAGAGAGGTCTAAAACCGGTGGTTGGACTG CAGCTACCATGATTTTAGGTCAATATCTCATAAACAACCATATAATACCTCTCTTATTTATTTACACACTTTGGTGTAAA CGTATATATGCAATTTTATTGATCAGATTTGGTGCATGTTTAATTTGTTATTGTTATCATGATCAGGAGGAGAAGTGATG GAGAGGTTGACAACACTGGGCATCACGGTCAATCTGGTAACGTATTTGACGGGGACGATGCATTTGGGCAATGCTGCCTC CGCCAATTTAGTTACCAATTTCGTGGGAACCTCTTTCATGCTCTGTTTATTTGGTGGATTTCTAGCCGACACTTATATTG GAAGGTTGGTTCCTTCTTGTAATCTTGTCCCTTAGATTATCACTTATATAATTGGGATTTTTTTCAGTGATATCCCTTCT GGGTAAAGTTAGTAATTTAAAAGTTAAAACCACTTATATATAATATCCTAATTCATAAAGTCCTTTATATTTCAAACCAA TTTTTTTTACATTATATATCTACAACTTGGGTGTGTTTGGAACTACTTGGCCACAAGTTTTGATTTAACTCTTACCTCCT TATAAGTTGAGGATTCGAACCCATTACGTATAGTAAAATTTCGGTTGGGACAACTTTTCTCGAAGATATCCACCCACCTC CTATTTAAGAGCGAATCATTGATGATCACCTCAACATGTCATTAACGCTATTCTCTCTATTTTAGCATTTTTGTAAAAAA AATAAAATAACGTGCTTCTCCTTTTGTAATTCACAACAATTTTCATATTTATCCAAATAAACAGAACGATATTTGGCATA TTTTATTCAAATATATATGTGTCGTGACCCGTGATTGCTTATTGGATTTTTTCTGTCACTTCTTGGACAGATACCTCAAT ATCGTCGTCTTTGCCGCCGTTCAAGCAACTGTAGGAGAATCTAAAACCTTTTATATTTGATTTTTTATTGCGATATTAAT TAAGTTATGTTCTTTCTAATTCGATGTGGCCAAATTTATATTATATTTAATAGGGAGTTGCACTTTTGACGATATCAACT ACAGTTCCGAGCCTAAGTCCTCCAAAATGCATGGAAGGTACGCCCTGCGTACGCGCAACCAACACGCAGCTGACGGTGTT GTTTTTAGCACTTTACGTGACGGCTCTCGGCACCGGCGGTGTGAAATCAAGTGTCCCTGGGTTCGGTTCAGATCAGTTTG ATGATTCGGAGAAAGAAGAGAAGAATGACATGGTTAAATTCCTAAACTGGTACTACTTTGTTGTGAACATAGGATCTTTA GCTGCAGTGACCGTTCTTGTGTACATTCAAGATAACCAAGGAAGACCGTGGGGCTATGGAATCTGTACCTGTGCGATTCT GTTCGCGCTTGTTGTGTTCATGTTGGGCACCAAGAAGTACCGGTACAAGAAACCGGTGGGGAGCCCTCTGACTCAGATTG CGGAGGTGTTTGTGGCGGCTTGGAGTAAGAGGCGCTTGCAATTGCCGTCTGATTCCTCATTGTTGTTTAATGAGGAGGAC ATCTTAGATGAAGCAGGGAGGATCAAGAAGCAGAGGTTGCCACATAGCAAGCAGTTCCGGTAACATTTCTCAGTAATTAA GATTCTAAATATTTTTTATTGACATGACATAATTTCATTGCTTTATATAAGAAATGAGACACCATTTGGAAATAGAGAAA TTCGATCCATCTAATTCACAATTTATGAAATCACATTTTAGCAGTAATATTTTGACATGGTGGAAGTTTTCAAGACAAAT TAAATTATTATTTGGCTGCTAAAGCTATAGTGATTTACTTAGGGAGACAAACTATTTTATGTGGATAAGAACTTTCATAA AAAAAAGAACTTTCATAAACTCTTTGATTGATCCATTAGGGTGACATTAGGGTGACAGTTAAAGTGCGTCATAATATATT GTTATCCATTCATGTGGATGTGATGATTTGTATTGCACAAATATCTTCTGCTGACTTTTGAATTAAGAATTTTTTTTGCC GCTGCAATGTCCCCCAACCCAAGCATTGCTTTCTGCCAAATGATAACAAACAAAAGATAACTATATATCATATGATAGCA ATAACAAGTTTAACGGTACATGTATAAAAGAATGATTGTGATTTAATTTGATTCTAGAACGTATATACACACACAAACTA TGTCCTTGGTTTTAGCTCAAGAATCATATATTGATGGATATTTTATTGATGCAACAGCTTCTTGGACAGAGCTGCAATCA AGGACTCAGAAAGCACTGGTGGAATCACAGTGATGAGGAAGTGGTATCTTACTACCTTAACAGATGTGGAAGAAGTGAAA TTGGTGATCAGAATGCTACCAATTTGGGCCACAACCATCATGTTTTGGACTGTTCAAGTTCAAATGATGACACTTTCAGT ATCACAGGCGACCACCATGGACCGCCGCATTGGAAAATCATTCACATTTCCGGCGGGGTCAATGACCGTCTTCTTAATCG GCACCATTCTCCTCACCGTCCCCTTCTATGACCGCTTTGTCGCTCCGATAGCAAGGAAAGCGCTCAACAACCCACAAGGG CTCACCCCTTTGCAACACACTGGAGTTGCTTTAGTACTCTCAGTCCTATCCATGGTGGCGGCAGCGTTTGTAGAAATTAA GCGTTTGAGATTTGCTGAATCACATGGTTTGGTGCATGATGCAAAGGAAATTATCCCAATGAGTGTTTTTTGGTTGGTAC CACAATTCGCCATTGTGGGTATTGGGGAAGCCCTTATGTACCTGGGGCAGTTAGACTTCTTCCTTAGAGAATGTCCAGAT GGGATGAAAACCATGAGCATGGGCCTATTCTTAAGCTCACGGGCCTTTGGTTTTTTCTTGAGCTCTTTATTGGTGGGTTT TGTGAACAAAATGACAGGCCCAAACAAGCCATGGATTGCAAATAATCTTAACCAAGGGAGGCTTTATGACTATTACTGGC TTTTGGCTGCGCTTAGTGTTGTAAATTTGTTTTTATACTTGGTATGTGCAAACTGGTATGTGTACAAGGACAAGAAGCTT GCTGAGGATACCTTACAAGAGTAGATATGATGACCCCACAGCATAGAAAGACACAACCAAATTCCATGCTTTGGAATTTT CTCCTAGCAACCTTTTCACTTATTTTATCTTTATTTTTTTGTAATAAGATGCAGCAACTTGTATTAATTAATAAGCTAAT CAATTATATTTTTACATGGAAGAAAACG
CDS sequence (LotjaGi2g1v0425100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCACTCTGCCCACAACAACACGAGGGAAAACTGTCCCTGATGCTTGTGACTACCAAGGCCTCCCAGCAGAGAGGTC TAAAACCGGTGGTTGGACTGCAGCTACCATGATTTTAGGAGGAGAAGTGATGGAGAGGTTGACAACACTGGGCATCACGG TCAATCTGGTAACGTATTTGACGGGGACGATGCATTTGGGCAATGCTGCCTCCGCCAATTTAGTTACCAATTTCGTGGGA ACCTCTTTCATGCTCTGTTTATTTGGTGGATTTCTAGCCGACACTTATATTGGAAGATACCTCAATATCGTCGTCTTTGC CGCCGTTCAAGCAACTGGAGTTGCACTTTTGACGATATCAACTACAGTTCCGAGCCTAAGTCCTCCAAAATGCATGGAAG GTACGCCCTGCGTACGCGCAACCAACACGCAGCTGACGGTGTTGTTTTTAGCACTTTACGTGACGGCTCTCGGCACCGGC GGTGTGAAATCAAGTGTCCCTGGGTTCGGTTCAGATCAGTTTGATGATTCGGAGAAAGAAGAGAAGAATGACATGGTTAA ATTCCTAAACTGGTACTACTTTGTTGTGAACATAGGATCTTTAGCTGCAGTGACCGTTCTTGTGTACATTCAAGATAACC AAGGAAGACCGTGGGGCTATGGAATCTGTACCTGTGCGATTCTGTTCGCGCTTGTTGTGTTCATGTTGGGCACCAAGAAG TACCGGTACAAGAAACCGGTGGGGAGCCCTCTGACTCAGATTGCGGAGGTGTTTGTGGCGGCTTGGAGTAAGAGGCGCTT GCAATTGCCGTCTGATTCCTCATTGTTGTTTAATGAGGAGGACATCTTAGATGAAGCAGGGAGGATCAAGAAGCAGAGGT TGCCACATAGCAAGCAGTTCCGCTTCTTGGACAGAGCTGCAATCAAGGACTCAGAAAGCACTGGTGGAATCACAGTGATG AGGAAGTGGTATCTTACTACCTTAACAGATGTGGAAGAAGTGAAATTGGTGATCAGAATGCTACCAATTTGGGCCACAAC CATCATGTTTTGGACTGTTCAAGTTCAAATGATGACACTTTCAGTATCACAGGCGACCACCATGGACCGCCGCATTGGAA AATCATTCACATTTCCGGCGGGGTCAATGACCGTCTTCTTAATCGGCACCATTCTCCTCACCGTCCCCTTCTATGACCGC TTTGTCGCTCCGATAGCAAGGAAAGCGCTCAACAACCCACAAGGGCTCACCCCTTTGCAACACACTGGAGTTGCTTTAGT ACTCTCAGTCCTATCCATGGTGGCGGCAGCGTTTGTAGAAATTAAGCGTTTGAGATTTGCTGAATCACATGGTTTGGTGC ATGATGCAAAGGAAATTATCCCAATGAGTGTTTTTTGGTTGGTACCACAATTCGCCATTGTGGGTATTGGGGAAGCCCTT ATGTACCTGGGGCAGTTAGACTTCTTCCTTAGAGAATGTCCAGATGGGATGAAAACCATGAGCATGGGCCTATTCTTAAG CTCACGGGCCTTTGGTTTTTTCTTGAGCTCTTTATTGGTGGGTTTTGTGAACAAAATGACAGGCCCAAACAAGCCATGGA TTGCAAATAATCTTAACCAAGGGAGGCTTTATGACTATTACTGGCTTTTGGCTGCGCTTAGTGTTGTAAATTTGTTTTTA TACTTGGTATGTGCAAACTGGTATGTGTACAAGGACAAGAAGCTTGCTGAGGATACCTTACAAGAGTAG
Protein sequence (LotjaGi2g1v0425100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATLPTTTRGKTVPDACDYQGLPAERSKTGGWTAATMILGGEVMERLTTLGITVNLVTYLTGTMHLGNAASANLVTNFVG TSFMLCLFGGFLADTYIGRYLNIVVFAAVQATGVALLTISTTVPSLSPPKCMEGTPCVRATNTQLTVLFLALYVTALGTG GVKSSVPGFGSDQFDDSEKEEKNDMVKFLNWYYFVVNIGSLAAVTVLVYIQDNQGRPWGYGICTCAILFALVVFMLGTKK YRYKKPVGSPLTQIAEVFVAAWSKRRLQLPSDSSLLFNEEDILDEAGRIKKQRLPHSKQFRFLDRAAIKDSESTGGITVM RKWYLTTLTDVEEVKLVIRMLPIWATTIMFWTVQVQMMTLSVSQATTMDRRIGKSFTFPAGSMTVFLIGTILLTVPFYDR FVAPIARKALNNPQGLTPLQHTGVALVLSVLSMVAAAFVEIKRLRFAESHGLVHDAKEIIPMSVFWLVPQFAIVGIGEAL MYLGQLDFFLRECPDGMKTMSMGLFLSSRAFGFFLSSLLVGFVNKMTGPNKPWIANNLNQGRLYDYYWLLAALSVVNLFL YLVCANWYVYKDKKLAEDTLQE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 73 | 73 | - | – | |
| PANTHER | 7 | 579 | 573 | 0.0 | ||
| PANTHER | 7 | 579 | 573 | 0.0 | – | |
| SUPERFAMILY | 22 | 571 | 550 | 1.27E-26 | ||
| CDD | 32 | 567 | 536 | 0.0 | – | |
| TMHMM | 47 | 69 | 23 | - | – | |
| Phobius | 74 | 93 | 20 | - | – | |
| TMHMM | 74 | 93 | 20 | - | – | |
| Phobius | 94 | 99 | 6 | - | – | |
| Phobius | 100 | 123 | 24 | - | – | |
| TMHMM | 100 | 122 | 23 | - | – | |
| Pfam | 102 | 534 | 433 | 1.9E-109 | ||
| Phobius | 124 | 142 | 19 | - | – | |
| Phobius | 143 | 162 | 20 | - | – | |
| TMHMM | 145 | 167 | 23 | - | – | |
| Phobius | 163 | 190 | 28 | - | – | |
| TMHMM | 188 | 210 | 23 | - | – | |
| Phobius | 191 | 211 | 21 | - | – | |
| Phobius | 212 | 216 | 5 | - | – | |
| TMHMM | 215 | 237 | 23 | - | – | |
| Phobius | 217 | 236 | 20 | - | – | |
| Phobius | 237 | 335 | 99 | - | – | |
| Phobius | 336 | 356 | 21 | - | – | |
| Phobius | 357 | 375 | 19 | - | – | |
| TMHMM | 375 | 397 | 23 | - | – | |
| Phobius | 376 | 398 | 23 | - | – | |
| Phobius | 399 | 418 | 20 | - | – | |
| TMHMM | 417 | 439 | 23 | - | – | |
| Phobius | 419 | 439 | 21 | - | – | |
| Phobius | 440 | 458 | 19 | - | – | |
| Phobius | 459 | 483 | 25 | - | – | |
| TMHMM | 464 | 486 | 23 | - | – | |
| Phobius | 484 | 503 | 20 | - | – | |
| TMHMM | 501 | 523 | 23 | - | – | |
| Phobius | 504 | 523 | 20 | - | – | |
| Phobius | 524 | 545 | 22 | - | – | |
| Phobius | 546 | 570 | 25 | - | – | |
| TMHMM | 547 | 569 | 23 | - | – | |
| Phobius | 571 | 582 | 12 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi2g1v0425100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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