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LotjaGi2g1v0425800.4

Overview

Field Value
Gene ID LotjaGi2g1v0425800
Transcript ID LotjaGi2g1v0425800.4
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description Acid beta-fructofuranosidase; TAIR: AT1G12240.1 Glycosyl hydrolases family 32 protein; Swiss-Prot: sp|Q43857|INVA_VICFA Acid beta-fructofuranosidase; TrEMBL-Plants: tr|A0A151TJF4|A0A151TJF4_CAJCA Acid beta-fructofuranosidase; Found in the gene: LotjaGi2g1v0425800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:92352429..92354814) extracted from Lotus japonicus Gifu genome v1.2.

TAGAACCACATGACACAATTATGTGATCAAATTGAACCTTTTGACATTGTTGTTGCAATTTCAGGTCCAATGTACTACAA GGGATGGTACCATTTCTTCTACCAGTACAATCCCAAGGGTGCAGTTTGGGGAGACATCATCGTTTGGGGACACGCCGTGT CAAGGGACTTGATCCACTGGCTTCACCTTCCAGTGGCAATGGTCGCCGACGAATGGTACGACAAAAATGGTGTGTGGACT GGCTCAGCCACCATTTTACCCAATGGTGAAGTGATCATGTTGTACACCGGTTCAACCAACGACTTGGTGCAGGTCCAGAA CCTTGCCTACCCTGCAGACCCATCTGATCCCTTACTCATTGATTGGATCAAATACCCTGGAAACCCAGTTCTGTTCCCAC CACCAGGTATCGGTACCAAGGATTTTCGTGACCCAACCACCGCTTGGCTCACCTCTGAAGGAAAATGGCGCATTTCCATC GGCTCGAAGCTTAACAGAACTGGAATCGCCTTGGTTTATGACACAGAGGATTTCAAGACATTTGAGCGTGTTGAGGGAAT CCTTCATGCTGTGCCTGGCACTGGCATGTGGGAGTGTGTTGATTTCTTCCCTGTTTCTTCTACTGTTGAAAATGGCTTGG ACACATCATTTAATGGGGCTGGTGTGAAGCATGCGATGAAGGTTAGCCTAGATGATGATAGACATGATTATTACGCGCTG GGGAGTTATGATGAAAACAATGTCAAGTTCACACCAGATGATTTCAAGAACGATGTTGGTATTGGATTGAGGTATGACTA TGGTGTCTTTTATGCATCCAAGACATTTTATGATCAGAGGAAAAAAAGGAGAGTGCTGTGGAGTTGGATTGGAGAGTCGG ATAGTGAACATGCTGATGTTGCCAAAGGTTGGGCATCGGTTCAGGTAAGTTTATAACTTATTGTACTTTTCTTGTTTATA AATTGTGTTTTGGGGAATAATGACATCGGTTATGCTCTAATTGAACAGGGTATTCCAAGAACAGTGATGCTTGATAAAAA AACCGATAGCAACTTGCTTCAATGGCCTGTTGCAGAGGTGGAGAGTTTGAGATTGAAAAGTGACAAGTTTGAGAATCTAA AGGCGAAGCCAGGGACAGTGGTGCCCCTAGACATTGCTACAGCCACACAGGTTTGAGCAACGTTGAATTTTTCTAGTGAT GAGTAATTTTTCAAGTGATACTAAATGACATGAAATGCAACAGTTGGATATTGTGGCTGAGTTTGAGATAGATAAGGAGG CGTTGGAGAAGACAGCCCGATCCAATTTGGAGTACAAGTGCGATAGCAGTGGTGGATCAGCTGAACGTGGTGCCTTGGGA CCTTTTGGTCTTCTGGTTTTAGCGGATGATGGTCTTTCTGAATATACTCCTGTCTACTTCTATATGGTTAAAGGAAGAGA TGGACATCTCAAGACTTACTTCTGCTCTGATCAATCAAGGTATTAGAGTTGTTTTGTTTTGACCTTGAAGTGGTGTTTTT GTTTGAAAAAATAAAAAATTGTATTAAGTTGTGATAAAAATACAATGTTGAATTTGTTTATATCTTTTTGGTAGGTCTTC TCTGGCGACTGATGTTGATAAGAATATCTTTGGAAGCTTTGTTCCAGTACTAAAAGATGAAAAGATGTCTATAAGGATAT TGGTAAGTTAACATTCCTTGAATTTTATTTGGTTCATAGCATCTTATGTTAATTATATGCTCATGAACTAGACCAACTAA TAGACTTAAAAGTATATAATTTAGGTGGACCATTCTATAGTGGAAAGCTTTGCTCAAGGTGGAAGGACGTGCGTGACATC CCGGGTATATCCAACAAGGGCAATGTATGGAACCGCTCGATTGATGTTGTTCAATAATGCTACTGAGGCTACTGTGACTG CCTCACTAAAGGTTTGGCAGATGAACTCTGCATTCATACGACCATTCCACCCTGACCAGAGGACATAAATGGCAGGGATA AGAGAATTAGAAGATTCAATTACATAACATAGCTGAAAGATGTTGCATCGCCAACTGGTACTGCTCGCATTTAATCCATG GCACCTTCTTATCAATCCACCTAAAGCTCTGGATTTTGGAGCAAAAGCACACCGCTCCTTCAATTTTGTCCAAATCTTTT TCCATTTGCATGTGTCTATTGTTATGAATTAATTATCCCAAAAGCTTAAGCTGTTAGGCAAAAGACACATGAATGATTAT ATTTCAAATACACCTCCTCACGCAAGAGCTCACTTGGGCTTTAAGCGAGAACATTGCAAATGTCCACCTACTATGTGCTA AAATTCATCTTTTTTTATTAGAAAATTTGGGAGCAACGAGGGTTGAGTTCTAGACCACTAGGTCAT
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0425800.4) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCTTGATAAAAAAACCGATAGCAACTTGCTTCAATGGCCTGTTGCAGAGGTGGAGAGTTTGAGATTGAAAAGTGACAA GTTTGAGAATCTAAAGGCGAAGCCAGGGACAGTGGTGCCCCTAGACATTGCTACAGCCACACAGTTGGATATTGTGGCTG AGTTTGAGATAGATAAGGAGGCGTTGGAGAAGACAGCCCGATCCAATTTGGAGTACAAGTGCGATAGCAGTGGTGGATCA GCTGAACGTGGTGCCTTGGGACCTTTTGGTCTTCTGGTTTTAGCGGATGATGGTCTTTCTGAATATACTCCTGTCTACTT CTATATGGTTAAAGGAAGAGATGGACATCTCAAGACTTACTTCTGCTCTGATCAATCAAGGTCTTCTCTGGCGACTGATG TTGATAAGAATATCTTTGGAAGCTTTGTTCCAGTACTAAAAGATGAAAAGATGTCTATAAGGATATTGGTGGACCATTCT ATAGTGGAAAGCTTTGCTCAAGGTGGAAGGACGTGCGTGACATCCCGGGTATATCCAACAAGGGCAATGTATGGAACCGC TCGATTGATGTTGTTCAATAATGCTACTGAGGCTACTGTGACTGCCTCACTAAAGGTTTGGCAGATGAACTCTGCATTCA TACGACCATTCCACCCTGACCAGAGGACATAA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0425800.4) extracted from Lotus japonicus Gifu v1.2 Proteins.

MLDKKTDSNLLQWPVAEVESLRLKSDKFENLKAKPGTVVPLDIATATQLDIVAEFEIDKEALEKTARSNLEYKCDSSGGS AERGALGPFGLLVLADDGLSEYTPVYFYMVKGRDGHLKTYFCSDQSRSSLATDVDKNIFGSFVPVLKDEKMSIRILVDHS IVESFAQGGRTCVTSRVYPTRAMYGTARLMLFNNATEATVTASLKVWQMNSAFIRPFHPDQRT
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31953:SF34
2 218 217 9.2E-101 –
PANTHER
PTHR31953
2 218 217 9.2E-101 –
Gene3D
G3DSA:2.115.10.20
2 24 23 1.6E-67
IPR023296
SUPERFAMILY
SSF49899
14 213 200 3.88E-39
IPR013320
Pfam
PF08244
17 208 192 8.6E-32
IPR013189
Gene3D
G3DSA:2.60.120.560
25 210 186 1.6E-67 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0425800.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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