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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0426800 |
| Transcript ID | LotjaGi2g1v0426800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | tRNA-modifying protein YgfZ; TAIR: AT4G12130.1 Glycine cleavage T-protein family; Swiss-Prot: sp|Q8L733|Y4121_ARATH Putative transferase At4g12130, mitochondrial; TrEMBL-Plants: tr|I1LGL4|I1LGL4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0426800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:92445184..92452560) extracted from Lotus japonicus Gifu genome v1.2.
GAAAATATTTTTACCTAACAAATGTTCATAGTCTCTTTTATTTTTGGGGCTCACAGATGTGTGGTATCGAATTTTAATGC CCCAAATCAACTACCAAATGAAAAACTAAACTAAACATAACCTAAGAATGGAGTGTTTGCTATGAGTTAACAACTTGAAG AAAAAAATTTGACACAATTTGAAAAGGCCCAAGTGGTCCAAACTCCAAATGCAGGTGAGGTGGATTTCCTCACAGGACTT TGATCGAACACCTATCAATCACTAACCAAACGTGCCAACCCAACCACTCACCACGTGGCCTCACCTCCCGAGTTCTGGCT TCTCAATTCAGCTGATCATCACTTCTTCTTCATCTTCATCTTCATCTTCTTCACTCCCCAAATCAATCAATCAAACAGTG ACTAACTATGAATCGATTAGCATTTCCCAAATCCTTTACGCAACGATGCAGAGCCATACACCAAACAACTTCCAAACACA GTCCACAAACCCAGCTCCATAGTGCTGGACCCGTCGCCTCTCTCCTCAAGTCCCGCTCCGTTATACGATTCCGAGGACCT GACACCATCAAGTTCCTTCAGGGCCTCTTGACCAACGATGTACGGAGGTTTGCTGAACCCGTTGGTGAGAAAACCGCCAA TATGCCTACACCCAACGTGCCTGCTGCGTCGGTTCCTCCTTTGTATGCTGCGTTGTTGACCCCTCAAGGGAGGTTCCTCT ACGACCTCTTTCTCTATAACCCGCCCAAAGTCACCGCCAAGCTTGATAGAACCGGGTCTGGGCCTGGCTCCGACGCCGCC GATGAACCCTTTGATTTGTATGCCGATGTAGATTCTTCTGTGTTGGATGAGTGTTTGGAAACCTTCATAAAGTGAGTTTC CTTCTCTTTCGGGGATTACTGAATTTTTTATTTTATTTTATGGCGTTTGATTCTTACTTGTTCTTGTTCTGTATCATTGA CTCTTGCTATTGTATTAATTTGATTGTTAATTTTACAATACTGTCAGTCAGGGTTGGAGTTTATTTCTACTCAATTGCCA ATTAGATAGAGAATTAGAGATACATGACATGATATCACTGACGTAAGCGATGTTCCATTGCTTCCATTTATCCACTTTTT GGAACAATGTGAGAATTGAGAAATTCCTAGGTGCCATGTTCACAGGAGAAAACTCGTACTATATACTATTTGGTGTAGAA ATTTTTGGTTAGTATTCTAGTACTCAATGCAACAGTTGTTTTCTATTTTTTAACTTTCAAAGAGCAAACTTCTAAGGAAA AAACTAGGGTGTTATATTATGATGGAAGCAGTGCACTCTTATTAGAGTTTGGGTTAGGCCTAACTCTACCCTCAAAGCTA GCTAGGTGAGGGCGGAAAATGTATTTCAATGGTACAGAGACCTTAAGATTTTAGTGTTGCAGATACCGGTTGAGGTCAAA GGTTGAGATTGATGATGTCACAAACGATTTCTCATGCTGGCAGCGTTATGGTTCTGGCCCTACTGAGAAGTCCTCACACG TAGAAGAACCAGAGGCAGCTTCTGTTGGCTGGGGTGCTGGTGTGGATGATGCTGCAATGTCATCATCACGTGGGGGTAAT CTTGGGTGGCAATGGTTTAAGGATCCCAGATTGGCCTGTCTTGGTTTCAGAGGGATATTCCCATCAAATATAATTCGTTA GTATCTATTCCTCTGCTGCTAATAAGATTTGCATCTATTTATGGCTGGAATATTTTATATTACTGTCACAAGTCTCTAGA TATGTAGTCTAAAAGGTTTCCCTCTACGTGTTGCAGCACCTCTAATTGAGGCTGACAAAGAGACTGATGAAGAGAATTAC CTTTTATGGAGAATAGAGAAGGGAGTAGCAGAAGGATCAACTGAGATTCCAAAAGGTGCATAGTTGTTTCATTGTAAGAA TTCCTCAGAATTCTTTTTGCGAGCTGTGTCTAACTATCTTGATTAATTGATCATGCCCAGGTGAGGCAGTGCCGCTTGAG TGTAATCTTGTAGGCCTTAATGCAATCAGCTTTGACAAAGGTTGCTATGTGGGCCAGGAACTCGTTGCTCGTACACACCA CAGAGGAGTGATTCGGAAGCGTATAGTTCCTCTAAGGTTTCTTGACAGTGATGGGAAAGGTAATTCTCCAAGGAGTACTT ATAGGTGCCCACTAGGGTGGACTACCGTACTTATATTCTATATTATCATCGACAATACAATACACTCTGAACCATTCTAT TTCTGCATCTCCAGAATTATTAGACAAAGTCGCTCCAGGCTCAGAAGTAATAAACACAGCATCTAGCAAAAAAGCTGGTA CAGTGACTACTGCCCTAGGAGGTTGTGGGTTGGGGCTCTTGCGGCTGGAGGAAGCTTTCAAGGGGTCCAGTGCCTTGTCC ATTCAAGGACAAGAGGATGTGAAGGTTGTTGCTAGTAAACCAGATTGGTGGCCTTCTGATTGGCTTCAAGATCATCAACA GCACACTGCTTTTGCCTAGGATGTTCAATGTCTTCAAAAGGTCAGTATTGTAAATGTGGAGTTAATGTAATCATTATGCT TCCACCGGGTGAAAATACCCGGTGAAAAGGAAACTGGAAGATGGCAGTTTTGGATTTTCTTGCGGAATAAGTTTCATTGT GATAGAATAGCAGTTTGTCATTTTTCCTTAGGAACCTTCTTGTAAACCAATTTTGCGTTTGGCAACTTAGAAAGGAATAA GATATTACAATATCTTTGTACCTGTGCAAAACTATCATTTTGTCAACTGTTTCAGCATATGTAGTTGGAAGTTGTAACTA GTAGTACATTTGTGGCATTATGTGACTTTAATTCTGTAGCACCTTTCATGCAAATATATTAACTTTCAGCAGTACAAGTT TGTTCCAAAATTGCTCGAAAAAATTATCATTTGCATGATTTTGGGTGCCTTTTATTACTGTAATTTTTGTCTTCCATCGC CAGTATTCCTCCTGGTCTTGTGCATCTTTCCTTAAAAAGCATCGAGAAGAGAGTTGAACGGATTTCCTTCCCATGAAACA AGTTTCTCCAAAACCACTTTGTCTTCTATCACTTGTTGTTTCCTTATTGCAGGCTATGTTATATAATATAATCTATTGTA TTTAATAGTATCACCAGCCCAAACTTCATCCCACTATGACTTGTCCTCCTCATTCCCAACTACCCTTATTAAGCACTTAG CGTACAACCAATGCTATTTTCACCCTCTACCCTTTTCCAAAGATGCAGTATCTAACTACCCTCTAAACACTTTTGAATCC CCTGCACCCTCCCTTAACCCCTTGTCCCATATTTTGACTCGAGTTTTCCACCATTTTCTGCTACCTCCTCTTTCCTAATA AAGCCAAGGTAAAAAAAGATCATAAACTCTTAATTCCATGATCTCCCTCATCTTTCTTTTTACATACTCCCTCTGCACAA AAGATTTGAATGAAGATTCAAGTGAAGAACTGATACATTTTCAGATGGGAATGAATTGCAATACTGATTTTATTAGGTGA TGTATCTAGTGAGAAATGTTTTTATACGAGAACAAGAGGAAGAAATCTTGACCGTACAACCATACATGGATAGTCAGTTA AAATTTATTTCATAATTACATGACCACTGAAACATGTCATGGGATTTTTTTTTAACTTCATGTTTTAATATTGATCCTTC ATGATTAGATTTAATGGTTAAAACCTAATGATCTCTAACACATAAGAAAATTTCTCTGATATGATACATTTCACAAGTCT GCCTAAACAAGGCTCACAGTGAGTTCCGCACAATATAAATAAAAAATTCAAGCCATTCAACAATGCTGAAATCATCACCT TAGCCTTTTAATTTACAGTAAAAGAATATCCTTCAGCAATCCCGGCTGTTCATGATAATAGTATACAATTATTGGCATAA GTTAATTTAGCAGACTATATATGCTCATGACAGTGATAGTCATGGAATGAACTTAACTATTAGAAAATGTTTCAACCCCT CTTGATGCCAATAGAAAGTAGTAGGTCATTATGAGTGAGTAGGCAACACGCTCAGCTCCTGAATCACATCCACCATGGTT GGTCTTTGGTCAGGGACCTCATGGATACATTGCACTCCAAGCTTTGAAAGCGCCGCTGCTTCAGATTTTGAATACCTTTC CCTAAGATTTGTGTCAATAGAATCATCAAATCTTGAGGACTCAAACGCTATGCGTATTGAACCACCTATTGCCGTCTTGC CAGATAGAACTTGAAGAACAATAACACCAAATGCATATATGTCACTCTTCTCAGTAAAGCGTCCAGTAGTGATGTATTCC GGAGCGAGGTATCCCATGGCAGCGCTTACTTTCAAAGCTGAGAAAACAACATCATCTGCAAGAAGCTTAGGCAGTCCAGC ATCCATGATCAATGGGGTAAATTGATGGTCAAGGTGAACATTTTCCACTGAAATATTTTGGTGTACTATTGTAGGTTTGC TCGCTTCATTACTGTGCAGATATCCAATACCTGGTCATAAACCAATAGCAAGTGTCAATTATTAAGTTATCTAAAGTGAT GCAGCATGAAATTGACAATTGTGAAGTTCTCCTGAACTTAAAAATCATAAAACAGTCTTATTATCTAAATGATTGCATGT CTCCATCAACGTATAATTCCTAGTCTCCTTCAATGTCCTTTCTGAAAATGATAATTGCTGGAAGTTTTGGTCTGTTGTAA AACTTGTAATACATTTGCATAAAGGACATTGCAGGAATTATTGATTTTTTGACAAATATAATTGAAACTTTTCTGTTGTG CCATGTGTTAGGAACAACTAGGAGAATATCAGGAATAATGAACAACTAACCCTTTGCAATGCCTTTGATGATAGAAACCC TCTGCGACCAGTCAAGAAGATGGCCACTTCCATCTTCTATGTCAAGATATTGAGACAAGTTACCCATGGTGGCAAAGTCA TAGATAAGGAAACATTCACCTCTACCCTTTGAGCAACAGAAACCTCTGAGCCTGACAAGGTTTTCATGCCTCAGTGAGGT TACTAAGCTCAACCCCTTCACAAATTCAGCCTCCTCTGTTTTGCAGCATGTCACATTAATGCTTCTAATAGCCACAAGAG AACCATCTCTCATAACTCCTTTATAAACTGCTGAGAATTTGCTTTTACTCAACAAATTGGCTTCAGAAAGGTACTGTGTC GCAGATTCAACCTCATCAACATTAAACCTATATTCATTAAGATATTCATTGGATTCTCCACCAGCATCTTGGCCATCAGG CATTGGATACCATCCATTGCAATACTCAAGATTAACAAGTGCAGATGGACTTTTTTTGTATAACTCTTTAGGCTGCTCAG GACTAAGTTTCCCTTCAGAAGAATTTGAAGCAATCCTTTGCTTTTGGCGGCGGTATCTAACATATGTATAAATTCCAGCA CCTATGATTGTAAGAATGATAGCTATGGCACTCGCTGTGAAGACAGTTTGAGAAAACCTTCTTGATTTTGAGCAATGGGT CTGGTTACAGTGCAACTTAATATGTGCAGGCTCTGGAAGAGTCTTTGTAGGATTACTGTTTTTGGCTTGGTCTTGGCCTG ATGCATCAATATGGTTAACGTTCAAATCCTGATCTTTGTTGCAAGCTCCCAAAGTAGAAAACCCATCTCCACATAAACCT GGGTTGTTTACTCCTTGGAATCCTTCTCCAAGTCTCTTCAATGCTTCCCATTCATTTTCAAAACGTTAATAAGATTTAGA CTAAAATACAAAGAGAAATGCCAGTAAAATTTGTGGATGGGGAAAAGCAGAAGGTAAAAACTTCACAAGAACTATAGGAT AATGGAGGCATACCAGAAGGAACAATTCCTGAGAGAGAATTGTTTTGAATATCTAGAACTTCTAAGTGTGCAACATGGGC TAGTGTTGCGGGAATCGCTCCACTGAAGTTGTTGAAGCTCAAATTTAGCCTGCTTAGCTTCTCCAAGTTCCCCAAGCCAA GAGGAATTTGACCACTCAACTTGTTATATTGCAAAGCAAGTGTACTGAGCTGCTTCAAGGAACCCATCTGTGTAGGTATA TTCCCCACCAACTGGTTATCACCCAACTGGAGTACTGAAAAAAAAAAGGTAAACATGATTAACTAACATAAAGGACTCAA ACCAATTTGGCTCATTGGAAAATGAAATTCCCTAAACCCAATTCAAAACCAATATGGATCCACAGCTATTCTCTCATGGC CATTGATTCTTTAGATGAAATTCTTCACTGATTAGTAAAAAATTGAATTGGTCAAAATAGTTTTAAACATTTATCATTTG CTTGCTGCATAGGCTGCGGGGGCAGCAGAAGATCCAAATTCAATTCAAAACCTGATTACAATTATGAAGCTTATGCTGTA ATTTTAAACCACTGTGAAATATGAATACCAAAAGACTATCTTGTAAGTTTACTCACCTTGGAGACTAACCATGTTACCGA CTTCAGTAGGAATGGTTCCAGATAGACTATTGACATCAAGATAGAGATCAACCAGATCAGTGAGATTTGAAATGTGTGGA GGTATCTCCCCAGAAAGATTGTTGTAGTGCAAGTATAACCCTGTCAAGCATCTAAGCTCAGCCACAGCTGGAGAGAGCCA ACCTGAAAGACCCTTTCCCTGCAAGGAGATGTTGGCCACTTTCCGGTGCTCGTTGCACGCAATCCCTTCAAACAAGCCAC CGCACGGATCACCATCACTGATCCACGAGCTAAGGATCTTGCCTTCAGGATCCATAGAGGATTTCAAGTCCATCAGAGCT CTGAGCTCTGCATTTCCAAGAACTGTCTGAGGACTGACAAATGCAAAAAATAGAAACAGAAAAAGGAGGAGATGGAGAGA ATTCATGGTGATTTTGGGGTAGGGATTCTCAAACAGAAGCTGAAAGAGAGAGACACCCATGTGAGTGTTTATCTTAAATA ACCAAACTTTGGTGTAAAATGTTGTTGGTCACGTTGTTTTGATCTTTCTTTGAAGACTTGTTAGTCTAGGACTTTGTTAG TTTGTGGAAAGATAGATAGCATTATGAAAGGGGGGACATAATTAAGTGACTTAACTTTATGAGTTGCTGACAGGAAGAAG CAGGTTGGTTCACATTGAATGTCTCTCGAGTCTTTGAGCAGGTTTTGGGGGGAAAATTTATGATTCTATGATCACGACAA CATTGGTGTTCATGTTCGGCGGGGATGGCTCCTGCTGCTACTCCATGTGAAAACAATTTCTATTGTGGAATTAAAAGCTT AGATAATGATTTGGACCCACCTATCTTTGACTTTTTGTCATAATCATGTATGGAGTATCTAGGTATTTACTTTTTGTCTG CTTCCCCTGAAATTAAG
CDS sequence (LotjaGi2g1v0426800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATCGATTAGCATTTCCCAAATCCTTTACGCAACGATGCAGAGCCATACACCAAACAACTTCCAAACACAGTCCACA AACCCAGCTCCATAGTGCTGGACCCGTCGCCTCTCTCCTCAAGTCCCGCTCCGTTATACGATTCCGAGGACCTGACACCA TCAAGTTCCTTCAGGGCCTCTTGACCAACGATGTACGGAGGTTTGCTGAACCCGTTGGTGAGAAAACCGCCAATATGCCT ACACCCAACGTGCCTGCTGCGTCGGTTCCTCCTTTGTATGCTGCGTTGTTGACCCCTCAAGGGAGGTTCCTCTACGACCT CTTTCTCTATAACCCGCCCAAAGTCACCGCCAAGCTTGATAGAACCGGGTCTGGGCCTGGCTCCGACGCCGCCGATGAAC CCTTTGATTTGTATGCCGATGTAGATTCTTCTGTGTTGGATGAGTGTTTGGAAACCTTCATAAAATACCGGTTGAGGTCA AAGGTTGAGATTGATGATGTCACAAACGATTTCTCATGCTGGCAGCGTTATGGTTCTGGCCCTACTGAGAAGTCCTCACA CGTAGAAGAACCAGAGGCAGCTTCTGTTGGCTGGGGTGCTGGTGTGGATGATGCTGCAATGTCATCATCACGTGGGGGTA ATCTTGGGTGGCAATGGTTTAAGGATCCCAGATTGGCCTGTCTTGGTTTCAGAGGGATATTCCCATCAAATATAATTCCA CCTCTAATTGAGGCTGACAAAGAGACTGATGAAGAGAATTACCTTTTATGGAGAATAGAGAAGGGAGTAGCAGAAGGATC AACTGAGATTCCAAAAGGTGAGGCAGTGCCGCTTGAGTGTAATCTTGTAGGCCTTAATGCAATCAGCTTTGACAAAGGTT GCTATGTGGGCCAGGAACTCGTTGCTCGTACACACCACAGAGGAGTGATTCGGAAGCGTATAGTTCCTCTAAGGTTTCTT GACAGTGATGGGAAAGAATTATTAGACAAAGTCGCTCCAGGCTCAGAAGTAATAAACACAGCATCTAGCAAAAAAGCTGG TACAGTGACTACTGCCCTAGGAGGTTGTGGGTTGGGGCTCTTGCGGCTGGAGGAAGCTTTCAAGGGGTCCAGTGCCTTGT CCATTCAAGGACAAGAGGATGTGAAGGTTGTTGCTAGTAAACCAGATTGGTGGCCTTCTGATTGGCTTCAAGATCATCAA CAGCACACTGCTTTTGCCTAG
Protein sequence (LotjaGi2g1v0426800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNRLAFPKSFTQRCRAIHQTTSKHSPQTQLHSAGPVASLLKSRSVIRFRGPDTIKFLQGLLTNDVRRFAEPVGEKTANMP TPNVPAASVPPLYAALLTPQGRFLYDLFLYNPPKVTAKLDRTGSGPGSDAADEPFDLYADVDSSVLDECLETFIKYRLRS KVEIDDVTNDFSCWQRYGSGPTEKSSHVEEPEAASVGWGAGVDDAAMSSSRGGNLGWQWFKDPRLACLGFRGIFPSNIIP PLIEADKETDEENYLLWRIEKGVAEGSTEIPKGEAVPLECNLVGLNAISFDKGCYVGQELVARTHHRGVIRKRIVPLRFL DSDGKELLDKVAPGSEVINTASSKKAGTVTTALGGCGLGLLRLEEAFKGSSALSIQGQEDVKVVASKPDWWPSDWLQDHQ QHTAFA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 12 | 387 | 376 | 5.4E-60 | ||
| SUPERFAMILY | 36 | 309 | 274 | 7.22E-50 | – | |
| PANTHER | 37 | 395 | 359 | 3.7E-113 | – | |
| PANTHER | 37 | 395 | 359 | 3.7E-113 | – | |
| TIGRFAM | 253 | 318 | 66 | 3.8E-26 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0426800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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