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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR027266
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 14 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.986s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0352669.1
n.a. tRNA modification GTPase mnmE [Medicago truncatula] gi|358349532|ref|XP_003638789.1| chr0 185494956 185499204 -
2 domain predictions
1 GO term
Lj0g3v0352669.2
n.a. PREDICTED: tRNA modification GTPase MnmE-like [Cicer arietinum] gi|502130302|ref|XP_004500604.1| chr0 185494956 185499204 -
2 domain predictions
1 GO term
Lj4g3v2693590.1
n.a. PREDICTED: aminomethyltransferase-like [Glycine max] gi|356512604|ref|XP_003525008.1| chr4 36351568 36356518 -
2 domain predictions
1 GO term
Lj6g3v1849470.1
n.a. n.a. chr6 20370235 20372239 +
2 domain predictions
1 GO term
Lj6g3v1849480.1
n.a. PREDICTED: LOW QUALITY PROTEIN: aminomethyltransferase, mitochondrial-like [Glycine max] gi|356531975|ref|XP_003534551.1| chr6 20370580 20373269 -
2 domain predictions
1 GO term
LotjaGi1g1v0246400.1
n.a. tRNA modification GTPase mnmE; TAIR: AT1G78010.1 tRNA modification GTPase; Swiss-Prot: sp|Q3MBM5|MNME_ANAVT tRNA modification GTPase MnmE; TrEMBL-Plants: tr|G8A389|G8A389_MEDTR tRNA modification GTPase trmE; Found in the gene: LotjaGi1g1v0246400 LjG1.1_chr1 59183875 59188482 -
2 domain predictions
1 GO term
LotjaGi1g1v0246400.2
n.a. tRNA modification GTPase mnmE; TAIR: AT1G78010.1 tRNA modification GTPase; Swiss-Prot: sp|Q3MBM5|MNME_ANAVT tRNA modification GTPase MnmE; TrEMBL-Plants: tr|K7KJB6|K7KJB6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0246400 LjG1.1_chr1 59184176 59188339 -
2 domain predictions
1 GO term
LotjaGi2g1v0426800.1
n.a. tRNA-modifying protein YgfZ; TAIR: AT4G12130.1 Glycine cleavage T-protein family; Swiss-Prot: sp|Q8L733|Y4121_ARATH Putative transferase At4g12130, mitochondrial; TrEMBL-Plants: tr|I1LGL4|I1LGL4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0426800 LjG1.1_chr2 92445184 92452560 -
2 domain predictions
1 GO term
LotjaGi4g1v0345600.1
n.a. tRNA-modifying protein YgfZ; TAIR: AT4G12130.1 Glycine cleavage T-protein family; Swiss-Prot: sp|Q8L733|Y4121_ARATH Putative transferase At4g12130, mitochondrial; TrEMBL-Plants: tr|I1LGL4|I1LGL4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0345600 LjG1.1_chr4 72525670 72528136 +
2 domain predictions
1 GO term
LotjaGi4g1v0388400.1
n.a. Aminomethyltransferase; TAIR: AT1G60990.1 Glycine cleavage T-protein family; Swiss-Prot: sp|Q681Y3|Y1099_ARATH Putative transferase At1g60990, chloroplastic; TrEMBL-Plants: tr|A0A151UBV7|A0A151UBV7_CAJCA Aminomethyltransferase; Found in the gene: LotjaGi4g1v0388400 LjG1.1_chr4 76666374 76670956 -
2 domain predictions
1 GO term
LotjaGi4g1v0388400.2
n.a. Aminomethyltransferase; TAIR: AT1G60990.1 Glycine cleavage T-protein family; Swiss-Prot: sp|Q681Y3|Y1099_ARATH Putative transferase At1g60990, chloroplastic; TrEMBL-Plants: tr|A0A151UBV7|A0A151UBV7_CAJCA Aminomethyltransferase; Found in the gene: LotjaGi4g1v0388400 LjG1.1_chr4 76666374 76670973 -
2 domain predictions
1 GO term
LotjaGi6g1v0293200.1
n.a. Aminomethyltransferase; TAIR: AT1G11860.1 Glycine cleavage T-protein family; Swiss-Prot: sp|P49364|GCST_PEA Aminomethyltransferase, mitochondrial; TrEMBL-Plants: tr|I3SSE7|I3SSE7_LOTJA Aminomethyltransferase; Found in the gene: LotjaGi6g1v0293200 LjG1.1_chr6 61109478 61112779 -
2 domain predictions
1 GO term
LotjaGi6g1v0293200.2
n.a. Aminomethyltransferase; TAIR: AT1G11860.1 Glycine cleavage T-protein family; Swiss-Prot: sp|P49364|GCST_PEA Aminomethyltransferase, mitochondrial; TrEMBL-Plants: tr|I3SSE7|I3SSE7_LOTJA Aminomethyltransferase; Found in the gene: LotjaGi6g1v0293200 LjG1.1_chr6 61109666 61112831 -
2 domain predictions
1 GO term
LotjaGi6g1v0293200.3
n.a. Aminomethyltransferase; TAIR: AT1G11860.1 Glycine cleavage T-protein family; Swiss-Prot: sp|P49364|GCST_PEA Aminomethyltransferase, mitochondrial; TrEMBL-Plants: tr|I3SSE7|I3SSE7_LOTJA Aminomethyltransferase; Found in the gene: LotjaGi6g1v0293200 LjG1.1_chr6 61110072 61111686 -
2 domain predictions
1 GO term