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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0431100 |
| Transcript ID | LotjaGi2g1v0431100.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nuclear pore complex protein Nup50; TAIR: AT4G11790.1 Pleckstrin homology (PH) domain superfamily protein; Swiss-Prot: sp|Q9JIH2|NUP50_MOUSE Nuclear pore complex protein Nup50; TrEMBL-Plants: tr|A0A061G427|A0A061G427_THECC Pleckstrin domain superfamily protein isoform 1; Found in the gene: LotjaGi2g1v0431100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:92800416..92805314) extracted from Lotus japonicus Gifu genome v1.2.
GTGCTCGTCAATGTCCATAACTCCATGTGAATTCTGTAGTTCCCTGGGCAACTGTAAACCCTAATCGTTACCACCATCGT ATCGAACGGCCCCAATTGAAAGTGTGTTCCCCACCCGATCCAACGGATCCATTTGATTTGACGCATTTAATTTTGAGAAA AATTATTTCGAAAATTTTGGTATTTTATTGATTTTCAGAAAAGGAAGAGGAGTGAGAATTTTCTCTTTTCTTCCATTCCA TCGAATTCTCACTGTCTTCTTCAAATTCTCGATTTCCTCTGTAACTGGTGGCAATAGTAATTACCTGCTACAGAAACCCT AATTCCCAAACACGATGATGAGAGGTTCGAAGCGTATGGCCGTGTCGGAACCCAACCACTCCGATACCACGGAAACCGCC GCCGTAAGTAACACTCGCTCGCTCGCACCTTTCTCATTCTCAACTTTCATCCCGTATTGAATTTGATTCGATTTTATTTC TCTGCTTTTAGCTTCAATTTTCCCCCAATTTTTACAGGAGAGAATTTTCCAGCTAGTTTCAAACCATTCAAGTATTTTGT TTTTTTGGCACTTAATTTTTGTTACTGTAGCTGGTAGAGTGGGTTCTGAATAATATGCTTGATTGAAATTTTCATTCTAT AAGATTCTCTGTATATGCAATTCAATGGTTGTTGGCAGTAGATTCAAGAGTAATTGCTCTTGTAAGTGGAAAAATAGTAG ATAGGTTAAATGGGTATTTCAATCGTGCTTACTTTGTGCTATTTAAGTATTGCCTTTATGTGAAGCTAATTATACCTCGA TTTATAAATAATGCAGTTCCGGAATAAAAGAGTAATGGAAGGATCTCTGTTTGATGCCCATAGGGCTGAACCGTCCCAAC AACCAACGGTTTCAACACCGCCTTTGGATATGAAACGGGCAGAGTCATCACAGCAGCATGTGAGAGCTTTAAATACCCAG TTTGCAAGGTTCAGTCAACACAATTTTGCTTTTACTTTATTTCCTCACTTCAATTGTTCTGTCAACAAAAACATGATTTC GTCATGATAATTGGAGGATTCATTCTCTTGCTCTATTATTTGGGTTAAGCTTATTCAATATTCATTAGTGGTTGATGTAC ATCATAATGTCTTTGATATGTATAGTCTTAAAGTGTTTTGTGTTTCTGTGGTCATGAAAGTTGTGTTGGTTATATTACAT CACCTTTCTCATTTTTATTCTGCATGTCTTCTACACAGCTGGATTCAAACACAACTAAAGAATCATCCTGATGAGCTCTG GGAAGATGGTGTAAGAGATTACCTCGATCATGCTTCAAGCATTATGGTAATTCTTCATGTTGTTTAATGCTCTGAAGACA AGTATAGCTTGTATTTCTAATTTACTCTGTTTAACTATATGTAGCAAAATATGTTAATGAAGGTTATATTTACAAGCTGC TCTCATGTCAGTATTGTTGTTTCCTGTACACTAACAGACACCTGCATATGTGAAAACAATGACGTTCAACTTGAAAAGTA ACAATCCATGTTTATAATAATATCATTTCTGTATGTTTTCCCAAGAGTTGGAGTCTTTTTATTATCTACATATTGGGTAT CATATGAAAACTTTCACCTGTTCCCACTCCTTCAGTTTATTGGTCGGATAGCATCTAAGGCTATACTCGAGTATCTTTTT CTAGTTACTCGATTCCTTGAGTTAGTAGTATTAGCTTGTATGTATGCCCATTTTTTCTGTAAGAATAATGTTGCTGCTTA AGCATGCGAAGTAATGGTGCAAGTCATGCATAGTTGAAAAATTGACCTTGTATAGGGTGTATATTGTTTCAGGAGAAATT TAGTGATGTGGTCAGCTGGCTCAAAGCAAATGCAACCAAGGCAGAAATTTTGGCTCCTGATGGTGGTACTTCTTTTGCTG GGAAAAAGTTCTTTCCTGAAGCAACAAACAAAGAAAATAAAACTTTTGGAGAAAAAACTGGGTCTACTCCTTTTAGTACC GCAACAACTTTTGCTGGGCAAAAGTACTTGCCTGAGGTATCAAACAAAGAAAATAAAATTTTTGGAGAAAATACTGGATT TACTCCTGTTAGTACAGCTACAACTTTTGCTGGGAAGAGCTTCTCGCCTGAGGTATCAAACAAAGAAAATAAAGCTTTTG GAGAAAAAACTGGATTTAGTCCTGTTAGTACAGCTACAACTTTTGCTGGGAAGATCTTCTCACCTGAGGTATCAAACAAA GAAAATAAAGCTTTTGGAGAAAAAACTGGATTTAGTCCTGTTAGTACAGCTACAACTTTTGCTGGGAAGAGCTTCTCGCC TGAGGTATCAAACAAAGAAAATAAATCTTTTGGTGAAAAAACTGGGTCTCCTCCTGTTAGTACAACTACAACTTTTGCTA GTTCTTGGACCCCTGGATTATTTTCAAACAGTCAAAACGTTTTTGCATTTGGTAAGTCTCTTCTGATTTTTTGTAGAAAG TATCCAATATGAACATGATATCTCCTCACATTGAAAATAACTCTAGAATGGGGTCACATTTGTGGTACATTAACTATTTA GTGCTTGAATGCATGCCACTCCAGGGGTGAAATAAGTCTCTTAGTAATACTCGTTTAAATTCAAAAGCATAAAATGTTGA TCAATACAGGATATATATATATATATATATATATATATATATATATATATTTTGCAATTTAGATGACAGATATCCATGTC ATAGTCATGGAACTTATGTCAAGCTGGTTTAGGAATCCAACAATAAATTGTGGCTGTGGAAAGATTTAGCTATTTTTCTG ATCTGTTATGTGTCCCATTTTTTTTTAAGCAAAGCTAGTTCTCTATCTCTTGCACATTTCTCTCATGTTATTAATGGAAC TTCACATTGCATTATGCATACGAGTTTGTAAAATAAAAAACTTTTGACAATAGCAATGAAGGTTAGCACTTAGTAAATTT AAAATTACATTCATAATAGTCTTTCCTGCCATCTATTTTATCCAGTTCAACTTTATACCAAAAGTTATGTCACTTTTATG ATTGGCTGCTAATTTTCTGTCTTTTGGTTTTAGGAAATCAAAGTTCAGCTCCATCTAACCATGGCGCTTCAGATGATGTA GATGGTGGTGAGGACTCCTAGCTTTAAACCTTTCACTTTAGCCATCATTCAGTCATTATAAGCTTTTTCATTTAATTCAT TGCATATGCGTATTATCCTATCCTTCTCATTACTTTGTATTTGAATTTGTTGATTGTGCCTTTTCTGATGCAAGAAGGTT CTTAGAAATGTTTATTTATGGTTTAGTGTTGAAATTGTTCTTTTTTAAATGATTATAAATGAAGGTTGCTTACTTTTCTT AGGGTTGGTAATAAAACATTCTTGATTTGGTCTCAGATAATGACGAGGAGCAGCCTAGCAGCCCATCAGTGAAGAAGTCT GAAGAGAAAGGTGTAGTAGTTGTACATGAAGCGAAGTGCAAGCTTTATGTGAAGGTATGTTCTTTTTAAAATCATACAAC ATTCAAGTGTAAAATTTATGCTGACTCGTATGTCACCATAATTTTGGAGCAGCATATTTATTTTTTTCCTCTTGTTTGAA ACCAACTTGAACTTGTTATGCTCGTTCCAATGATTTTATTGTCTCTTACCCTTGGCATGTCCAGTCAAGTGATCCAGCAG ATAATGATGCCTGGAAAGATAAAGGAATGGGCCAACTGTCTATTAAATGCAAAGAGGGTGTGAGCAAGGCTACCCGAGAG TCCAAACCTACAATTGTTGTTCGAAATGAGGTTCGTTCGTTTATATTTTTCTTAGTGTTTTATGCTATTGTCTTTTGAGG GAATTCTCGTTAACGTGATCACTAGTTATTTTATCAAGAATTTTATGTACTGTTGCATTTTCTGTTTCTGTTAACTGCTG GCAGGTAGGGAAAATTCTTCTCAATGCCTTGTTGTATCCAGGAATCAAGACAAATCTACAGAAGAACTCCGTTGTTGCCA TATTTCATACTTCGGTAAGACACTGGAGGATTGCATGTTTTTCTAAATACTTCAGATAACTTGTGTGCAGACACTGGAAA AAAGGTTCAATATAGCTAAAACATACAAAGACCGTATTGAAAGAGTTAAAAAGTCTTCAAATGTTTAGACTAGCTTGCCA TGCCTGATGCTGCTTTACCATGTTATTTGAATAGCTTAGCTTAGCTTCCCTTCATTTCCATTCTTCTGTATTCAACCTCA ATTTTTTATTTCATTATGATTGAATATGAATATCTAACAAAAAATTGAATGTCAAATTTTATAGGGTAATCCTGATGGAA GTGGTGGAGATAATGATAGTGTTGTTGCACGAACATTTTTGATCCGGATGAAAACAGAAGATGATCGAAACAAACTGGCT TCAACTATTCAAGAATATGCTCCAACATCTTGAGAGTACAAGAGTCATGATTATTGTGCCCCCTTGAGCCTTTAAATGTA AACGGATATTGGATAGGATTCCAATTTTTCCTTTCCAAAAAATTCGTATTTTTTTAGTTGCCATTTTTCAGATGTGTTGC CAAACCTTTGTCTTTAGAGGTTGTTGCTTATGTATCGTAAGAGAAGAATGTGGTTGGCTTTTGGACTTTGGTCGGCTAAA GTCCTTTTTTGCTATGGATAAATGCAATTGTCGTCTAAGTGTGGTGCAATCTTGCCTTGAACTTGCTATTCTATTTTTTC ACGCCATAAAATGAGGTGAAGAAGAATTATGTTATTTGTTCTAAGGTCAGAGCATCCAAAATTTCGTTTAAATCCAAAGT AGTTTTGAGTTTAAAAATTAGTCATTGTTGAACAAAAGTTAAGTTAATTAAAAGTAAGTTTACTCTGATCCAAACCTAAG TTTGTTGTAGAAGAAAGAG
CDS sequence (LotjaGi2g1v0431100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGAGAGGTTCGAAGCGTATGGCCGTGTCGGAACCCAACCACTCCGATACCACGGAAACCGCCGCCTTCCGGAATAA AAGAGTAATGGAAGGATCTCTGTTTGATGCCCATAGGGCTGAACCGTCCCAACAACCAACGGTTTCAACACCGCCTTTGG ATATGAAACGGGCAGAGTCATCACAGCAGCATGTGAGAGCTTTAAATACCCAGTTTGCAAGCTGGATTCAAACACAACTA AAGAATCATCCTGATGAGCTCTGGGAAGATGGTGTAAGAGATTACCTCGATCATGCTTCAAGCATTATGGAGAAATTTAG TGATGTGGTCAGCTGGCTCAAAGCAAATGCAACCAAGGCAGAAATTTTGGCTCCTGATGGTGGTACTTCTTTTGCTGGGA AAAAGTTCTTTCCTGAAGCAACAAACAAAGAAAATAAAACTTTTGGAGAAAAAACTGGGTCTACTCCTTTTAGTACCGCA ACAACTTTTGCTGGGCAAAAGTACTTGCCTGAGGTATCAAACAAAGAAAATAAAATTTTTGGAGAAAATACTGGATTTAC TCCTGTTAGTACAGCTACAACTTTTGCTGGGAAGAGCTTCTCGCCTGAGGTATCAAACAAAGAAAATAAAGCTTTTGGAG AAAAAACTGGATTTAGTCCTGTTAGTACAGCTACAACTTTTGCTGGGAAGATCTTCTCACCTGAGGTATCAAACAAAGAA AATAAAGCTTTTGGAGAAAAAACTGGATTTAGTCCTGTTAGTACAGCTACAACTTTTGCTGGGAAGAGCTTCTCGCCTGA GGTATCAAACAAAGAAAATAAATCTTTTGGTGAAAAAACTGGGTCTCCTCCTGTTAGTACAACTACAACTTTTGCTAGTT CTTGGACCCCTGGATTATTTTCAAACAGTCAAAACGTTTTTGCATTTGGAAATCAAAGTTCAGCTCCATCTAACCATGGC GCTTCAGATGATGTAGATGGTGATAATGACGAGGAGCAGCCTAGCAGCCCATCAGTGAAGAAGTCTGAAGAGAAAGGTGT AGTAGTTGTACATGAAGCGAAGTGCAAGCTTTATGTGAAGTCAAGTGATCCAGCAGATAATGATGCCTGGAAAGATAAAG GAATGGGCCAACTGTCTATTAAATGCAAAGAGGGTGTGAGCAAGGCTACCCGAGAGTCCAAACCTACAATTGTTGTTCGA AATGAGGTAGGGAAAATTCTTCTCAATGCCTTGTTGTATCCAGGAATCAAGACAAATCTACAGAAGAACTCCGTTGTTGC CATATTTCATACTTCGGGTAATCCTGATGGAAGTGGTGGAGATAATGATAGTGTTGTTGCACGAACATTTTTGATCCGGA TGAAAACAGAAGATGATCGAAACAAACTGGCTTCAACTATTCAAGAATATGCTCCAACATCTTGA
Protein sequence (LotjaGi2g1v0431100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMRGSKRMAVSEPNHSDTTETAAFRNKRVMEGSLFDAHRAEPSQQPTVSTPPLDMKRAESSQQHVRALNTQFASWIQTQL KNHPDELWEDGVRDYLDHASSIMEKFSDVVSWLKANATKAEILAPDGGTSFAGKKFFPEATNKENKTFGEKTGSTPFSTA TTFAGQKYLPEVSNKENKIFGENTGFTPVSTATTFAGKSFSPEVSNKENKAFGEKTGFSPVSTATTFAGKIFSPEVSNKE NKAFGEKTGFSPVSTATTFAGKSFSPEVSNKENKSFGEKTGSPPVSTTTTFASSWTPGLFSNSQNVFAFGNQSSAPSNHG ASDDVDGDNDEEQPSSPSVKKSEEKGVVVVHEAKCKLYVKSSDPADNDAWKDKGMGQLSIKCKEGVSKATRESKPTIVVR NEVGKILLNALLYPGIKTNLQKNSVVAIFHTSGNPDGSGGDNDSVVARTFLIRMKTEDDRNKLASTIQEYAPTS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 57 | 57 | - | – | |
| PANTHER | 2 | 221 | 220 | 2.7E-122 | – | |
| PANTHER | 2 | 221 | 220 | 2.7E-122 | – | |
| MobiDBLite | 40 | 57 | 18 | - | – | |
| PANTHER | 200 | 472 | 273 | 2.7E-122 | – | |
| PANTHER | 200 | 472 | 273 | 2.7E-122 | – | |
| MobiDBLite | 263 | 289 | 27 | - | – | |
| MobiDBLite | 310 | 345 | 36 | - | – | |
| Gene3D | 316 | 473 | 158 | 2.7E-20 | ||
| SMART | 331 | 470 | 140 | 0.0012 | ||
| Pfam | 339 | 469 | 131 | 8.3E-6 | ||
| SUPERFAMILY | 341 | 471 | 131 | 4.51E-15 | – | |
| ProSiteProfiles | 341 | 474 | 134 | 9.642 | ||
| CDD | 343 | 471 | 129 | 4.57756E-27 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Intracellular transport | The directed movement of substances within a cell. |
Expression pattern of LotjaGi2g1v0431100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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