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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0431100 |
| Transcript ID | LotjaGi2g1v0431100.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nuclear pore complex protein Nup50; TAIR: AT4G11790.1 Pleckstrin homology (PH) domain superfamily protein; Swiss-Prot: sp|Q9JIH2|NUP50_MOUSE Nuclear pore complex protein Nup50; TrEMBL-Plants: tr|A0A061G427|A0A061G427_THECC Pleckstrin domain superfamily protein isoform 1; Found in the gene: LotjaGi2g1v0431100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:92800560..92804663) extracted from Lotus japonicus Gifu genome v1.2.
TATATGCAATTCAATGGTTGTTGGCAGTAGATTCAAGAGTAATTGCTCTTGTAAGTGGAAAAATAGTAGATAGGTTAAAT GGGTATTTCAATCGTGCTTACTTTGTGCTATTTAAGTATTGCCTTTATGTGAAGCTAATTATACCTCGATTTATAAATAA TGCAGTTCCGGAATAAAAGAGTAATGGAAGGATCTCTGTTTGATGCCCATAGGGCTGAACCGTCCCAACAACCAACGGTT TCAACACCGCCTTTGGATATGAAACGGGCAGAGTCATCACAGCAGCATGTGAGAGCTTTAAATACCCAGTTTGCAAGGTT CAGTCAACACAATTTTGCTTTTACTTTATTTCCTCACTTCAATTGTTCTGTCAACAAAAACATGATTTCGTCATGATAAT TGGAGGATTCATTCTCTTGCTCTATTATTTGGGTTAAGCTTATTCAATATTCATTAGTGGTTGATGTACATCATAATGTC TTTGATATGTATAGTCTTAAAGTGTTTTGTGTTTCTGTGGTCATGAAAGTTGTGTTGGTTATATTACATCACCTTTCTCA TTTTTATTCTGCATGTCTTCTACACAGCTGGATTCAAACACAACTAAAGAATCATCCTGATGAGCTCTGGGAAGATGGTG TAAGAGATTACCTCGATCATGCTTCAAGCATTATGGTAATTCTTCATGTTGTTTAATGCTCTGAAGACAAGTATAGCTTG TATTTCTAATTTACTCTGTTTAACTATATGTAGCAAAATATGTTAATGAAGGTTATATTTACAAGCTGCTCTCATGTCAG TATTGTTGTTTCCTGTACACTAACAGACACCTGCATATGTGAAAACAATGACGTTCAACTTGAAAAGTAACAATCCATGT TTATAATAATATCATTTCTGTATGTTTTCCCAAGAGTTGGAGTCTTTTTATTATCTACATATTGGGTATCATATGAAAAC TTTCACCTGTTCCCACTCCTTCAGTTTATTGGTCGGATAGCATCTAAGGCTATACTCGAGTATCTTTTTCTAGTTACTCG ATTCCTTGAGTTAGTAGTATTAGCTTGTATGTATGCCCATTTTTTCTGTAAGAATAATGTTGCTGCTTAAGCATGCGAAG TAATGGTGCAAGTCATGCATAGTTGAAAAATTGACCTTGTATAGGGTGTATATTGTTTCAGGAGAAATTTAGTGATGTGG TCAGCTGGCTCAAAGCAAATGCAACCAAGGCAGAAATTTTGGCTCCTGATGGTGGTACTTCTTTTGCTGGGAAAAAGTTC TTTCCTGAAGCAACAAACAAAGAAAATAAAACTTTTGGAGAAAAAACTGGGTCTACTCCTTTTAGTACCGCAACAACTTT TGCTGGGCAAAAGTACTTGCCTGAGGTATCAAACAAAGAAAATAAAATTTTTGGAGAAAATACTGGATTTACTCCTGTTA GTACAGCTACAACTTTTGCTGGGAAGAGCTTCTCGCCTGAGGTATCAAACAAAGAAAATAAAGCTTTTGGAGAAAAAACT GGATTTAGTCCTGTTAGTACAGCTACAACTTTTGCTGGGAAGATCTTCTCACCTGAGGTATCAAACAAAGAAAATAAAGC TTTTGGAGAAAAAACTGGATTTAGTCCTGTTAGTACAGCTACAACTTTTGCTGGGAAGAGCTTCTCGCCTGAGGTATCAA ACAAAGAAAATAAATCTTTTGGTGAAAAAACTGGGTCTCCTCCTGTTAGTACAACTACAACTTTTGCTAGTTCTTGGACC CCTGGATTATTTTCAAACAGTCAAAACGTTTTTGCATTTGGTAAGTCTCTTCTGATTTTTTGTAGAAAGTATCCAATATG AACATGATATCTCCTCACATTGAAAATAACTCTAGAATGGGGTCACATTTGTGGTACATTAACTATTTAGTGCTTGAATG CATGCCACTCCAGGGGTGAAATAAGTCTCTTAGTAATACTCGTTTAAATTCAAAAGCATAAAATGTTGATCAATACAGGA TATATATATATATATATATATATATATATATATATATATTTTGCAATTTAGATGACAGATATCCATGTCATAGTCATGGA ACTTATGTCAAGCTGGTTTAGGAATCCAACAATAAATTGTGGCTGTGGAAAGATTTAGCTATTTTTCTGATCTGTTATGT GTCCCATTTTTTTTTAAGCAAAGCTAGTTCTCTATCTCTTGCACATTTCTCTCATGTTATTAATGGAACTTCACATTGCA TTATGCATACGAGTTTGTAAAATAAAAAACTTTTGACAATAGCAATGAAGGTTAGCACTTAGTAAATTTAAAATTACATT CATAATAGTCTTTCCTGCCATCTATTTTATCCAGTTCAACTTTATACCAAAAGTTATGTCACTTTTATGATTGGCTGCTA ATTTTCTGTCTTTTGGTTTTAGGAAATCAAAGTTCAGCTCCATCTAACCATGGCGCTTCAGATGATGTAGATGGTGGTGA GGACTCCTAGCTTTAAACCTTTCACTTTAGCCATCATTCAGTCATTATAAGCTTTTTCATTTAATTCATTGCATATGCGT ATTATCCTATCCTTCTCATTACTTTGTATTTGAATTTGTTGATTGTGCCTTTTCTGATGCAAGAAGGTTCTTAGAAATGT TTATTTATGGTTTAGTGTTGAAATTGTTCTTTTTTAAATGATTATAAATGAAGGTTGCTTACTTTTCTTAGGGTTGGTAA TAAAACATTCTTGATTTGGTCTCAGATAATGACGAGGAGCAGCCTAGCAGCCCATCAGTGAAGAAGTCTGAAGAGAAAGG TGTAGTAGTTGTACATGAAGCGAAGTGCAAGCTTTATGTGAAGGTATGTTCTTTTTAAAATCATACAACATTCAAGTGTA AAATTTATGCTGACTCGTATGTCACCATAATTTTGGAGCAGCATATTTATTTTTTTCCTCTTGTTTGAAACCAACTTGAA CTTGTTATGCTCGTTCCAATGATTTTATTGTCTCTTACCCTTGGCATGTCCAGTCAAGTGATCCAGCAGATAATGATGCC TGGAAAGATAAAGGAATGGGCCAACTGTCTATTAAATGCAAAGAGGGTGTGAGCAAGGCTACCCGAGAGTCCAAACCTAC AATTGTTGTTCGAAATGAGGTTCGTTCGTTTATATTTTTCTTAGTGTTTTATGCTATTGTCTTTTGAGGGAATTCTCGTT AACGTGATCACTAGTTATTTTATCAAGAATTTTATGTACTGTTGCATTTTCTGTTTCTGTTAACTGCTGGCAGGTAGGGA AAATTCTTCTCAATGCCTTGTTGTATCCAGGAATCAAGACAAATCTACAGAAGAACTCCGTTGTTGCCATATTTCATACT TCGGTAAGACACTGGAGGATTGCATGTTTTTCTAAATACTTCAGATAACTTGTGTGCAGACACTGGAAAAAAGGTTCAAT ATAGCTAAAACATACAAAGACCGTATTGAAAGAGTTAAAAAGTCTTCAAATGTTTAGACTAGCTTGCCATGCCTGATGCT GCTTTACCATGTTATTTGAATAGCTTAGCTTAGCTTCCCTTCATTTCCATTCTTCTGTATTCAACCTCAATTTTTTATTT CATTATGATTGAATATGAATATCTAACAAAAAATTGAATGTCAAATTTTATAGGGTAATCCTGATGGAAGTGGTGGAGAT AATGATAGTGTTGTTGCACGAACATTTTTGATCCGGATGAAAACAGAAGATGATCGAAACAAACTGGCTTCAACTATTCA AGAATATGCTCCAACATCTTGAGAGTACAAGAGTCATGATTATTGTGCCCCCTTGAGCCTTTAAATGTAAACGGATATTG GATAGGATTCCAATTTTTCCTTTCCAAAAAATTCGTATTTTTTTAGTTGCCATTTTTCAGATGTGTTGCCAAACCTTTGT CTTTAGAGGTTGTTGCTTATGTATCGTAAGAGAAGAATGTGGTTGGCTTTTGGACTTTGGTCGGCTAAAGTCCTTTTTTG CTATGGATAAATGCAATTGTCGTCTAAGTGTGGTGCAATCTTGCCTTGAACTTGCTATTCTATTTTTTCACGCCATAAAA TGAGGTGAAGAAGAATTATGTTAT
CDS sequence (LotjaGi2g1v0431100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGGATCTCTGTTTGATGCCCATAGGGCTGAACCGTCCCAACAACCAACGGTTTCAACACCGCCTTTGGATATGAA ACGGGCAGAGTCATCACAGCAGCATGTGAGAGCTTTAAATACCCAGTTTGCAAGCTGGATTCAAACACAACTAAAGAATC ATCCTGATGAGCTCTGGGAAGATGGTGTAAGAGATTACCTCGATCATGCTTCAAGCATTATGGAGAAATTTAGTGATGTG GTCAGCTGGCTCAAAGCAAATGCAACCAAGGCAGAAATTTTGGCTCCTGATGGTGGTACTTCTTTTGCTGGGAAAAAGTT CTTTCCTGAAGCAACAAACAAAGAAAATAAAACTTTTGGAGAAAAAACTGGGTCTACTCCTTTTAGTACCGCAACAACTT TTGCTGGGCAAAAGTACTTGCCTGAGGTATCAAACAAAGAAAATAAAATTTTTGGAGAAAATACTGGATTTACTCCTGTT AGTACAGCTACAACTTTTGCTGGGAAGAGCTTCTCGCCTGAGGTATCAAACAAAGAAAATAAAGCTTTTGGAGAAAAAAC TGGATTTAGTCCTGTTAGTACAGCTACAACTTTTGCTGGGAAGATCTTCTCACCTGAGGTATCAAACAAAGAAAATAAAG CTTTTGGAGAAAAAACTGGATTTAGTCCTGTTAGTACAGCTACAACTTTTGCTGGGAAGAGCTTCTCGCCTGAGGTATCA AACAAAGAAAATAAATCTTTTGGTGAAAAAACTGGGTCTCCTCCTGTTAGTACAACTACAACTTTTGCTAGTTCTTGGAC CCCTGGATTATTTTCAAACAGTCAAAACGTTTTTGCATTTGGAAATCAAAGTTCAGCTCCATCTAACCATGGCGCTTCAG ATGATGTAGATGGTGATAATGACGAGGAGCAGCCTAGCAGCCCATCAGTGAAGAAGTCTGAAGAGAAAGGTGTAGTAGTT GTACATGAAGCGAAGTGCAAGCTTTATGTGAAGTCAAGTGATCCAGCAGATAATGATGCCTGGAAAGATAAAGGAATGGG CCAACTGTCTATTAAATGCAAAGAGGGTGTGAGCAAGGCTACCCGAGAGTCCAAACCTACAATTGTTGTTCGAAATGAGG TAGGGAAAATTCTTCTCAATGCCTTGTTGTATCCAGGAATCAAGACAAATCTACAGAAGAACTCCGTTGTTGCCATATTT CATACTTCGGGTAATCCTGATGGAAGTGGTGGAGATAATGATAGTGTTGTTGCACGAACATTTTTGATCCGGATGAAAAC AGAAGATGATCGAAACAAACTGGCTTCAACTATTCAAGAATATGCTCCAACATCTTGA
Protein sequence (LotjaGi2g1v0431100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEGSLFDAHRAEPSQQPTVSTPPLDMKRAESSQQHVRALNTQFASWIQTQLKNHPDELWEDGVRDYLDHASSIMEKFSDV VSWLKANATKAEILAPDGGTSFAGKKFFPEATNKENKTFGEKTGSTPFSTATTFAGQKYLPEVSNKENKIFGENTGFTPV STATTFAGKSFSPEVSNKENKAFGEKTGFSPVSTATTFAGKIFSPEVSNKENKAFGEKTGFSPVSTATTFAGKSFSPEVS NKENKSFGEKTGSPPVSTTTTFASSWTPGLFSNSQNVFAFGNQSSAPSNHGASDDVDGDNDEEQPSSPSVKKSEEKGVVV VHEAKCKLYVKSSDPADNDAWKDKGMGQLSIKCKEGVSKATRESKPTIVVRNEVGKILLNALLYPGIKTNLQKNSVVAIF HTSGNPDGSGGDNDSVVARTFLIRMKTEDDRNKLASTIQEYAPTS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 30 | 30 | - | – | |
| PANTHER | 1 | 193 | 193 | 4.8E-118 | – | |
| PANTHER | 1 | 193 | 193 | 4.8E-118 | – | |
| MobiDBLite | 11 | 30 | 20 | - | – | |
| PANTHER | 167 | 443 | 277 | 4.8E-118 | – | |
| PANTHER | 167 | 443 | 277 | 4.8E-118 | – | |
| MobiDBLite | 234 | 260 | 27 | - | – | |
| Gene3D | 235 | 444 | 210 | 2.2E-26 | ||
| MobiDBLite | 281 | 316 | 36 | - | – | |
| SMART | 302 | 441 | 140 | 0.0012 | ||
| Pfam | 310 | 440 | 131 | 7.3E-6 | ||
| SUPERFAMILY | 312 | 442 | 131 | 3.89E-15 | – | |
| ProSiteProfiles | 312 | 445 | 134 | 9.642 | ||
| CDD | 314 | 442 | 129 | 2.74633E-27 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Intracellular transport | The directed movement of substances within a cell. |
Expression pattern of LotjaGi2g1v0431100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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