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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0431100 |
| Transcript ID | LotjaGi2g1v0431100.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nuclear pore complex protein Nup50; TAIR: AT4G11790.1 Pleckstrin homology (PH) domain superfamily protein; Swiss-Prot: sp|Q9JIH2|NUP50_MOUSE Nuclear pore complex protein Nup50; TrEMBL-Plants: tr|I1LGI3|I1LGI3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0431100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:92800560..92805236) extracted from Lotus japonicus Gifu genome v1.2.
GTATCGAACGGCCCCAATTGAAAGTGTGTTCCCCACCCGATCCAACGGATCCATTTGATTTGACGCATTTAATTTTGAGA AAAATTATTTCGAAAATTTTGGTATTTTATTGATTTTCAGAAAAGGAAGAGGAGTGAGAATTTTCTCTTTTCTTCCATTC CATCGAATTCTCACTGTCTTCTTCAAATTCTCGATTTCCTCTGTAACTGGTGGCAATAGTAATTACCTGCTACAGAAACC CTAATTCCCAAACACGATGATGAGAGGTTCGAAGCGTATGGCCGTGTCGGAACCCAACCACTCCGATACCACGGAAACCG CCGCCGTAAGTAACACTCGCTCGCTCGCACCTTTCTCATTCTCAACTTTCATCCCGTATTGAATTTGATTCGATTTTATT TCTCTGCTTTTAGCTTCAATTTTCCCCCAATTTTTACAGGAGAGAATTTTCCAGCTAGTTTCAAACCATTCAAGTATTTT GTTTTTTTGGCACTTAATTTTTGTTACTGTAGCTGGTAGAGTGGGTTCTGAATAATATGCTTGATTGAAATTTTCATTCT ATAAGATTCTCTGTATATGCAATTCAATGGTTGTTGGCAGTAGATTCAAGAGTAATTGCTCTTGTAAGTGGAAAAATAGT AGATAGGTTAAATGGGTATTTCAATCGTGCTTACTTTGTGCTATTTAAGTATTGCCTTTATGTGAAGCTAATTATACCTC GATTTATAAATAATGCAGTTCCGGAATAAAAGAGTAATGGAAGGATCTCTGTTTGATGCCCATAGGGCTGAACCGTCCCA ACAACCAACGGTTTCAACACCGCCTTTGGATATGAAACGGGCAGAGTCATCACAGCAGCATGTGAGAGCTTTAAATACCC AGTTTGCAAGGTTCAGTCAACACAATTTTGCTTTTACTTTATTTCCTCACTTCAATTGTTCTGTCAACAAAAACATGATT TCGTCATGATAATTGGAGGATTCATTCTCTTGCTCTATTATTTGGGTTAAGCTTATTCAATATTCATTAGTGGTTGATGT ACATCATAATGTCTTTGATATGTATAGTCTTAAAGTGTTTTGTGTTTCTGTGGTCATGAAAGTTGTGTTGGTTATATTAC ATCACCTTTCTCATTTTTATTCTGCATGTCTTCTACACAGCTGGATTCAAACACAACTAAAGAATCATCCTGATGAGCTC TGGGAAGATGGTGTAAGAGATTACCTCGATCATGCTTCAAGCATTATGGTAATTCTTCATGTTGTTTAATGCTCTGAAGA CAAGTATAGCTTGTATTTCTAATTTACTCTGTTTAACTATATGTAGCAAAATATGTTAATGAAGGTTATATTTACAAGCT GCTCTCATGTCAGTATTGTTGTTTCCTGTACACTAACAGACACCTGCATATGTGAAAACAATGACGTTCAACTTGAAAAG TAACAATCCATGTTTATAATAATATCATTTCTGTATGTTTTCCCAAGAGTTGGAGTCTTTTTATTATCTACATATTGGGT ATCATATGAAAACTTTCACCTGTTCCCACTCCTTCAGTTTATTGGTCGGATAGCATCTAAGGCTATACTCGAGTATCTTT TTCTAGTTACTCGATTCCTTGAGTTAGTAGTATTAGCTTGTATGTATGCCCATTTTTTCTGTAAGAATAATGTTGCTGCT TAAGCATGCGAAGTAATGGTGCAAGTCATGCATAGTTGAAAAATTGACCTTGTATAGGGTGTATATTGTTTCAGGAGAAA TTTAGTGATGTGGTCAGCTGGCTCAAAGCAAATGCAACCAAGGCAGAAATTTTGGCTCCTGATGGTGGTACTTCTTTTGC TGGGAAAAAGTTCTTTCCTGAAGCAACAAACAAAGAAAATAAAACTTTTGGAGAAAAAACTGGGTCTACTCCTTTTAGTA CCGCAACAACTTTTGCTGGGCAAAAGTACTTGCCTGAGGTATCAAACAAAGAAAATAAAATTTTTGGAGAAAATACTGGA TTTACTCCTGTTAGTACAGCTACAACTTTTGCTGGGAAGAGCTTCTCGCCTGAGGTATCAAACAAAGAAAATAAAGCTTT TGGAGAAAAAACTGGATTTAGTCCTGTTAGTACAGCTACAACTTTTGCTGGGAAGATCTTCTCACCTGAGGTATCAAACA AAGAAAATAAAGCTTTTGGAGAAAAAACTGGATTTAGTCCTGTTAGTACAGCTACAACTTTTGCTGGGAAGAGCTTCTCG CCTGAGGTATCAAACAAAGAAAATAAATCTTTTGGTGAAAAAACTGGGTCTCCTCCTGTTAGTACAACTACAACTTTTGC TAGTTCTTGGACCCCTGGATTATTTTCAAACAGTCAAAACGTTTTTGCATTTGGTAAGTCTCTTCTGATTTTTTGTAGAA AGTATCCAATATGAACATGATATCTCCTCACATTGAAAATAACTCTAGAATGGGGTCACATTTGTGGTACATTAACTATT TAGTGCTTGAATGCATGCCACTCCAGGGGTGAAATAAGTCTCTTAGTAATACTCGTTTAAATTCAAAAGCATAAAATGTT GATCAATACAGGATATATATATATATATATATATATATATATATATATATATTTTGCAATTTAGATGACAGATATCCATG TCATAGTCATGGAACTTATGTCAAGCTGGTTTAGGAATCCAACAATAAATTGTGGCTGTGGAAAGATTTAGCTATTTTTC TGATCTGTTATGTGTCCCATTTTTTTTTAAGCAAAGCTAGTTCTCTATCTCTTGCACATTTCTCTCATGTTATTAATGGA ACTTCACATTGCATTATGCATACGAGTTTGTAAAATAAAAAACTTTTGACAATAGCAATGAAGGTTAGCACTTAGTAAAT TTAAAATTACATTCATAATAGTCTTTCCTGCCATCTATTTTATCCAGTTCAACTTTATACCAAAAGTTATGTCACTTTTA TGATTGGCTGCTAATTTTCTGTCTTTTGGTTTTAGGAAATCAAAGTTCAGCTCCATCTAACCATGGCGCTTCAGATGATG TAGATGGTGGTGAGGACTCCTAGCTTTAAACCTTTCACTTTAGCCATCATTCAGTCATTATAAGCTTTTTCATTTAATTC ATTGCATATGCGTATTATCCTATCCTTCTCATTACTTTGTATTTGAATTTGTTGATTGTGCCTTTTCTGATGCAAGAAGG TTCTTAGAAATGTTTATTTATGGTTTAGTGTTGAAATTGTTCTTTTTTAAATGATTATAAATGAAGGTTGCTTACTTTTC TTAGGGTTGGTAATAAAACATTCTTGATTTGGTCTCAGATAATGACGAGGAGCAGCCTAGCAGCCCATCAGTGAAGAAGT CTGAAGAGAAAGGTGTAGTAGTTGTACATGAAGCGAAGTGCAAGCTTTATGTGAAGGTATGTTCTTTTTAAAATCATACA ACATTCAAGTGTAAAATTTATGCTGACTCGTATGTCACCATAATTTTGGAGCAGCATATTTATTTTTTTCCTCTTGTTTG AAACCAACTTGAACTTGTTATGCTCGTTCCAATGATTTTATTGTCTCTTACCCTTGGCATGTCCAGTCAAGTGATCCAGC AGATAATGATGCCTGGAAAGATAAAGGAATGGGCCAACTGTCTATTAAATGCAAAGAGGGTGTGAGCAAGGCTACCCGAG AGTCCAAACCTACAATTGTTGTTCGAAATGAGGTTCGTTCGTTTATATTTTTCTTAGTGTTTTATGCTATTGTCTTTTGA GGGAATTCTCGTTAACGTGATCACTAGTTATTTTATCAAGAATTTTATGTACTGTTGCATTTTCTGTTTCTGTTAACTGC TGGCAGGTAGGGAAAATTCTTCTCAATGCCTTGTTGTATCCAGGAATCAAGACAAATCTACAGAAGAACTCCGTTGTTGC CATATTTCATACTTCGGTAAGACACTGGAGGATTGCATGTTTTTCTAAATACTTCAGATAACTTGTGTGCAGACACTGGA AAAAAGGTTCAATATAGCTAAAACATACAAAGACCGTATTGAAAGAGTTAAAAAGTCTTCAAATGTTTAGACTAGCTTGC CATGCCTGATGCTGCTTTACCATGTTATTTGAATAGCTTAGCTTAGCTTCCCTTCATTTCCATTCTTCTGTATTCAACCT CAATTTTTTATTTCATTATGATTGAATATGAATATCTAACAAAAAATTGAATGTCAAATTTTATAGGGTAATCCTGATGG AAGTGGTGGAGATAATGATAGTGTTGTTGCACGAACATTTTTGATCCGGATGAAAACAGAAGATGATCGAAACAAACTGG CTTCAACTATTCAAGAATATGCTCCAACATCTTGAGAGTACAAGAGTCATGATTATTGTGCCCCCTTGAGCCTTTAAATG TAAACGGATATTGGATAGGATTCCAATTTTTCCTTTCCAAAAAATTCGTATTTTTTTAGTTGCCATTTTTCAGATGTGTT GCCAAACCTTTGTCTTTAGAGGTTGTTGCTTATGTATCGTAAGAGAAGAATGTGGTTGGCTTTTGGACTTTGGTCGGCTA AAGTCCTTTTTTGCTATGGATAAATGCAATTGTCGTCTAAGTGTGGTGCAATCTTGCCTTGAACTTGCTATTCTATTTTT TCACGCCATAAAATGAGGTGAAGAAGAATTATGTTAT
CDS sequence (LotjaGi2g1v0431100.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGAGAGGTTCGAAGCGTATGGCCGTGTCGGAACCCAACCACTCCGATACCACGGAAACCGCCGCCTTCCGGAATAA AAGAGTAATGGAAGGATCTCTGTTTGATGCCCATAGGGCTGAACCGTCCCAACAACCAACGGTTTCAACACCGCCTTTGG ATATGAAACGGGCAGAGTCATCACAGCAGCATGTGAGAGCTTTAAATACCCAGTTTGCAAGCTGGATTCAAACACAACTA AAGAATCATCCTGATGAGCTCTGGGAAGATGGTGTAAGAGATTACCTCGATCATGCTTCAAGCATTATGGAGAAATTTAG TGATGTGGTCAGCTGGCTCAAAGCAAATGCAACCAAGGCAGAAATTTTGGCTCCTGATGGTGGTACTTCTTTTGCTGGGA AAAAGTTCTTTCCTGAAGCAACAAACAAAGAAAATAAAACTTTTGGAGAAAAAACTGGGTCTACTCCTTTTAGTACCGCA ACAACTTTTGCTGGGCAAAAGTACTTGCCTGAGGTATCAAACAAAGAAAATAAAATTTTTGGAGAAAATACTGGATTTAC TCCTGTTAGTACAGCTACAACTTTTGCTGGGAAGAGCTTCTCGCCTGAGGTATCAAACAAAGAAAATAAATCTTTTGGTG AAAAAACTGGGTCTCCTCCTGTTAGTACAACTACAACTTTTGCTAGTTCTTGGACCCCTGGATTATTTTCAAACAGTCAA AACGTTTTTGCATTTGGAAATCAAAGTTCAGCTCCATCTAACCATGGCGCTTCAGATGATGTAGATGGTGATAATGACGA GGAGCAGCCTAGCAGCCCATCAGTGAAGAAGTCTGAAGAGAAAGGTGTAGTAGTTGTACATGAAGCGAAGTGCAAGCTTT ATGTGAAGTCAAGTGATCCAGCAGATAATGATGCCTGGAAAGATAAAGGAATGGGCCAACTGTCTATTAAATGCAAAGAG GGTGTGAGCAAGGCTACCCGAGAGTCCAAACCTACAATTGTTGTTCGAAATGAGGTAGGGAAAATTCTTCTCAATGCCTT GTTGTATCCAGGAATCAAGACAAATCTACAGAAGAACTCCGTTGTTGCCATATTTCATACTTCGGGTAATCCTGATGGAA GTGGTGGAGATAATGATAGTGTTGTTGCACGAACATTTTTGATCCGGATGAAAACAGAAGATGATCGAAACAAACTGGCT TCAACTATTCAAGAATATGCTCCAACATCTTGA
Protein sequence (LotjaGi2g1v0431100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMRGSKRMAVSEPNHSDTTETAAFRNKRVMEGSLFDAHRAEPSQQPTVSTPPLDMKRAESSQQHVRALNTQFASWIQTQL KNHPDELWEDGVRDYLDHASSIMEKFSDVVSWLKANATKAEILAPDGGTSFAGKKFFPEATNKENKTFGEKTGSTPFSTA TTFAGQKYLPEVSNKENKIFGENTGFTPVSTATTFAGKSFSPEVSNKENKSFGEKTGSPPVSTTTTFASSWTPGLFSNSQ NVFAFGNQSSAPSNHGASDDVDGDNDEEQPSSPSVKKSEEKGVVVVHEAKCKLYVKSSDPADNDAWKDKGMGQLSIKCKE GVSKATRESKPTIVVRNEVGKILLNALLYPGIKTNLQKNSVVAIFHTSGNPDGSGGDNDSVVARTFLIRMKTEDDRNKLA STIQEYAPTS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 57 | 57 | - | – | |
| PANTHER | 2 | 408 | 407 | 1.0E-121 | – | |
| PANTHER | 2 | 408 | 407 | 1.0E-121 | – | |
| MobiDBLite | 40 | 57 | 18 | - | – | |
| Gene3D | 177 | 409 | 233 | 4.0E-26 | ||
| MobiDBLite | 199 | 225 | 27 | - | – | |
| MobiDBLite | 246 | 281 | 36 | - | – | |
| SMART | 267 | 406 | 140 | 0.0012 | ||
| Pfam | 275 | 405 | 131 | 6.2E-6 | ||
| SUPERFAMILY | 277 | 407 | 131 | 3.28E-15 | – | |
| ProSiteProfiles | 277 | 410 | 134 | 9.642 | ||
| CDD | 279 | 407 | 129 | 1.37474E-27 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Intracellular transport | The directed movement of substances within a cell. |
Expression pattern of LotjaGi2g1v0431100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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