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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0431100 |
| Transcript ID | LotjaGi2g1v0431100.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nuclear pore complex protein Nup50; TAIR: AT4G11790.1 Pleckstrin homology (PH) domain superfamily protein; Swiss-Prot: sp|Q9JIH2|NUP50_MOUSE Nuclear pore complex protein Nup50; TrEMBL-Plants: tr|I1LGI3|I1LGI3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0431100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:92800882..92804646) extracted from Lotus japonicus Gifu genome v1.2.
TTGTTGGCAGTAGATTCAAGAGTAATTGCTCTTGTAAGTGGAAAAATAGTAGATAGGTTAAATGGGTATTTCAATCGTGC TTACTTTGTGCTATTTAAGTATTGCCTTTATGTGAAGCTAATTATACCTCGATTTATAAATAATGCAGTTCCGGAATAAA AGAGTAATGGAAGGATCTCTGTTTGATGCCCATAGGGCTGAACCGTCCCAACAACCAACGGTTTCAACACCGCCTTTGGA TATGAAACGGGCAGAGTCATCACAGCAGCATGTGAGAGCTTTAAATACCCAGTTTGCAAGGTTCAGTCAACACAATTTTG CTTTTACTTTATTTCCTCACTTCAATTGTTCTGTCAACAAAAACATGATTTCGTCATGATAATTGGAGGATTCATTCTCT TGCTCTATTATTTGGGTTAAGCTTATTCAATATTCATTAGTGGTTGATGTACATCATAATGTCTTTGATATGTATAGTCT TAAAGTGTTTTGTGTTTCTGTGGTCATGAAAGTTGTGTTGGTTATATTACATCACCTTTCTCATTTTTATTCTGCATGTC TTCTACACAGCTGGATTCAAACACAACTAAAGAATCATCCTGATGAGCTCTGGGAAGATGGTGTAAGAGATTACCTCGAT CATGCTTCAAGCATTATGGTAATTCTTCATGTTGTTTAATGCTCTGAAGACAAGTATAGCTTGTATTTCTAATTTACTCT GTTTAACTATATGTAGCAAAATATGTTAATGAAGGTTATATTTACAAGCTGCTCTCATGTCAGTATTGTTGTTTCCTGTA CACTAACAGACACCTGCATATGTGAAAACAATGACGTTCAACTTGAAAAGTAACAATCCATGTTTATAATAATATCATTT CTGTATGTTTTCCCAAGAGTTGGAGTCTTTTTATTATCTACATATTGGGTATCATATGAAAACTTTCACCTGTTCCCACT CCTTCAGTTTATTGGTCGGATAGCATCTAAGGCTATACTCGAGTATCTTTTTCTAGTTACTCGATTCCTTGAGTTAGTAG TATTAGCTTGTATGTATGCCCATTTTTTCTGTAAGAATAATGTTGCTGCTTAAGCATGCGAAGTAATGGTGCAAGTCATG CATAGTTGAAAAATTGACCTTGTATAGGGTGTATATTGTTTCAGGAGAAATTTAGTGATGTGGTCAGCTGGCTCAAAGCA AATGCAACCAAGGCAGAAATTTTGGCTCCTGATGGTGGTACTTCTTTTGCTGGGAAAAAGTTCTTTCCTGAAGCAACAAA CAAAGAAAATAAAACTTTTGGAGAAAAAACTGGGTCTACTCCTTTTAGTACCGCAACAACTTTTGCTGGGCAAAAGTACT TGCCTGAGGTATCAAACAAAGAAAATAAAATTTTTGGAGAAAATACTGGATTTACTCCTGTTAGTACAGCTACAACTTTT GCTGGGAAGAGCTTCTCGCCTGAGGTATCAAACAAAGAAAATAAAGCTTTTGGAGAAAAAACTGGATTTAGTCCTGTTAG TACAGCTACAACTTTTGCTGGGAAGATCTTCTCACCTGAGGTATCAAACAAAGAAAATAAAGCTTTTGGAGAAAAAACTG GATTTAGTCCTGTTAGTACAGCTACAACTTTTGCTGGGAAGAGCTTCTCGCCTGAGGTATCAAACAAAGAAAATAAATCT TTTGGTGAAAAAACTGGGTCTCCTCCTGTTAGTACAACTACAACTTTTGCTAGTTCTTGGACCCCTGGATTATTTTCAAA CAGTCAAAACGTTTTTGCATTTGGTAAGTCTCTTCTGATTTTTTGTAGAAAGTATCCAATATGAACATGATATCTCCTCA CATTGAAAATAACTCTAGAATGGGGTCACATTTGTGGTACATTAACTATTTAGTGCTTGAATGCATGCCACTCCAGGGGT GAAATAAGTCTCTTAGTAATACTCGTTTAAATTCAAAAGCATAAAATGTTGATCAATACAGGATATATATATATATATAT ATATATATATATATATATATATTTTGCAATTTAGATGACAGATATCCATGTCATAGTCATGGAACTTATGTCAAGCTGGT TTAGGAATCCAACAATAAATTGTGGCTGTGGAAAGATTTAGCTATTTTTCTGATCTGTTATGTGTCCCATTTTTTTTTAA GCAAAGCTAGTTCTCTATCTCTTGCACATTTCTCTCATGTTATTAATGGAACTTCACATTGCATTATGCATACGAGTTTG TAAAATAAAAAACTTTTGACAATAGCAATGAAGGTTAGCACTTAGTAAATTTAAAATTACATTCATAATAGTCTTTCCTG CCATCTATTTTATCCAGTTCAACTTTATACCAAAAGTTATGTCACTTTTATGATTGGCTGCTAATTTTCTGTCTTTTGGT TTTAGGAAATCAAAGTTCAGCTCCATCTAACCATGGCGCTTCAGATGATGTAGATGGTGGTGAGGACTCCTAGCTTTAAA CCTTTCACTTTAGCCATCATTCAGTCATTATAAGCTTTTTCATTTAATTCATTGCATATGCGTATTATCCTATCCTTCTC ATTACTTTGTATTTGAATTTGTTGATTGTGCCTTTTCTGATGCAAGAAGGTTCTTAGAAATGTTTATTTATGGTTTAGTG TTGAAATTGTTCTTTTTTAAATGATTATAAATGAAGGTTGCTTACTTTTCTTAGGGTTGGTAATAAAACATTCTTGATTT GGTCTCAGATAATGACGAGGAGCAGCCTAGCAGCCCATCAGTGAAGAAGTCTGAAGAGAAAGGTGTAGTAGTTGTACATG AAGCGAAGTGCAAGCTTTATGTGAAGGTATGTTCTTTTTAAAATCATACAACATTCAAGTGTAAAATTTATGCTGACTCG TATGTCACCATAATTTTGGAGCAGCATATTTATTTTTTTCCTCTTGTTTGAAACCAACTTGAACTTGTTATGCTCGTTCC AATGATTTTATTGTCTCTTACCCTTGGCATGTCCAGTCAAGTGATCCAGCAGATAATGATGCCTGGAAAGATAAAGGAAT GGGCCAACTGTCTATTAAATGCAAAGAGGGTGTGAGCAAGGCTACCCGAGAGTCCAAACCTACAATTGTTGTTCGAAATG AGGTTCGTTCGTTTATATTTTTCTTAGTGTTTTATGCTATTGTCTTTTGAGGGAATTCTCGTTAACGTGATCACTAGTTA TTTTATCAAGAATTTTATGTACTGTTGCATTTTCTGTTTCTGTTAACTGCTGGCAGGTAGGGAAAATTCTTCTCAATGCC TTGTTGTATCCAGGAATCAAGACAAATCTACAGAAGAACTCCGTTGTTGCCATATTTCATACTTCGGTAAGACACTGGAG GATTGCATGTTTTTCTAAATACTTCAGATAACTTGTGTGCAGACACTGGAAAAAAGGTTCAATATAGCTAAAACATACAA AGACCGTATTGAAAGAGTTAAAAAGTCTTCAAATGTTTAGACTAGCTTGCCATGCCTGATGCTGCTTTACCATGTTATTT GAATAGCTTAGCTTAGCTTCCCTTCATTTCCATTCTTCTGTATTCAACCTCAATTTTTTATTTCATTATGATTGAATATG AATATCTAACAAAAAATTGAATGTCAAATTTTATAGGGTAATCCTGATGGAAGTGGTGGAGATAATGATAGTGTTGTTGC ACGAACATTTTTGATCCGGATGAAAACAGAAGATGATCGAAACAAACTGGCTTCAACTATTCAAGAATATGCTCCAACAT CTTGA
CDS sequence (LotjaGi2g1v0431100.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGGATCTCTGTTTGATGCCCATAGGGCTGAACCGTCCCAACAACCAACGGTTTCAACACCGCCTTTGGATATGAA ACGGGCAGAGTCATCACAGCAGCATGTGAGAGCTTTAAATACCCAGTTTGCAAGCTGGATTCAAACACAACTAAAGAATC ATCCTGATGAGCTCTGGGAAGATGGTGTAAGAGATTACCTCGATCATGCTTCAAGCATTATGGAGAAATTTAGTGATGTG GTCAGCTGGCTCAAAGCAAATGCAACCAAGGCAGAAATTTTGGCTCCTGATGGTGGTACTTCTTTTGCTGGGAAAAAGTT CTTTCCTGAAGCAACAAACAAAGAAAATAAAACTTTTGGAGAAAAAACTGGGTCTACTCCTTTTAGTACCGCAACAACTT TTGCTGGTTCTTGGACCCCTGGATTATTTTCAAACAGTCAAAACGTTTTTGCATTTGGGATGACAGATATCCATGTCATA GTCATGGAACTTATGTCAAGAAATCAAAGTTCAGCTCCATCTAACCATGGCGCTTCAGATGATGTAGATGGTGATAATGA CGAGGAGCAGCCTAGCAGCCCATCAGTGAAGAAGTCTGAAGAGAAAGGTGTAGTAGTTGTACATGAAGCGAAGTGCAAGC TTTATGTGAAGTCAAGTGATCCAGCAGATAATGATGCCTGGAAAGATAAAGGAATGGGCCAACTGTCTATTAAATGCAAA GAGGGTGTGAGCAAGGCTACCCGAGAGTCCAAACCTACAATTGTTGTTCGAAATGAGGTAGGGAAAATTCTTCTCAATGC CTTGTTGTATCCAGGAATCAAGACAAATCTACAGAAGAACTCCGTTGTTGCCATATTTCATACTTCGGGTAATCCTGATG GAAGTGGTGGAGATAATGATAGTGTTGTTGCACGAACATTTTTGATCCGGATGAAAACAGAAGATGATCGAAACAAACTG GCTTCAACTATTCAAGAATATGCTCCAACATCTTGA
Protein sequence (LotjaGi2g1v0431100.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEGSLFDAHRAEPSQQPTVSTPPLDMKRAESSQQHVRALNTQFASWIQTQLKNHPDELWEDGVRDYLDHASSIMEKFSDV VSWLKANATKAEILAPDGGTSFAGKKFFPEATNKENKTFGEKTGSTPFSTATTFAGSWTPGLFSNSQNVFAFGMTDIHVI VMELMSRNQSSAPSNHGASDDVDGDNDEEQPSSPSVKKSEEKGVVVVHEAKCKLYVKSSDPADNDAWKDKGMGQLSIKCK EGVSKATRESKPTIVVRNEVGKILLNALLYPGIKTNLQKNSVVAIFHTSGNPDGSGGDNDSVVARTFLIRMKTEDDRNKL ASTIQEYAPTS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 329 | 329 | 2.8E-114 | – | |
| MobiDBLite | 1 | 30 | 30 | - | – | |
| PANTHER | 1 | 329 | 329 | 2.8E-114 | – | |
| MobiDBLite | 11 | 30 | 20 | - | – | |
| Gene3D | 100 | 330 | 231 | 3.5E-25 | ||
| MobiDBLite | 169 | 202 | 34 | - | – | |
| SMART | 188 | 327 | 140 | 0.0012 | ||
| Pfam | 196 | 326 | 131 | 4.0E-6 | ||
| SUPERFAMILY | 198 | 328 | 131 | 2.05E-15 | – | |
| ProSiteProfiles | 198 | 331 | 134 | 9.642 | ||
| CDD | 200 | 328 | 129 | 1.54393E-28 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Intracellular transport | The directed movement of substances within a cell. |
Expression pattern of LotjaGi2g1v0431100.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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