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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0431400 |
| Transcript ID | LotjaGi2g1v0431400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Sugar transporter, putative; TAIR: AT1G11260.1 sugar transporter 1; Swiss-Prot: sp|Q41144|STC_RICCO Sugar carrier protein C; TrEMBL-Plants: tr|A0A151QUH9|A0A151QUH9_CAJCA Sugar transport protein 1; Found in the gene: LotjaGi2g1v0431400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:92832368..92834276) extracted from Lotus japonicus Gifu genome v1.2.
TCGAGAGCAAAAATGGCAGGGGCTTACATAGGGAAGGGAAAAAATTATCCCGGTAAACTTACCGGGAGAGTAATCACAAC TTGTATCGTTGCTGCATTCGGAGGCTTAATTTTTGGTTATGATCTCGGCATCTCCGGTACATACATCTTTATTGTTACAT ATTTTTTTACCATGATTTTTTTACCGTATACTCAAACATTCAGTTCAATATGTAATGAGTTCTATAACAAAATGATACTT AATTTGTGTATTTTATAGGTGGAGTTACCTCCATGGATCCATTTCTGAAGAAATTCTTCCCTGAAGTCTATGAAAAGGAG CACAACATAAAGCCTTCTGATAACCAATACTGCAAATTCGACAGCCAGATACTAACCCTCTTCACTTCCTCTCTGTACCT GGCCGCTCTTGTGGCCTCTATTGGAGCCTCCGCCATAACTCGCCTCTTCGGAAGGCGTCTCACCATGATTTCTGGCGGTG TGCTTTTTCTCATCGGCGCAGCCTTCAATTTCTTCGCTCAAGATGTCTGGATGCTCATCATTGGCCGCGTATTTCTTGGT TTTGGAATCGGATGCGCAAATCAGGTATAAATCTATCAATTTTATTAGTGACCGGATTCAGAAATTTTATGTTATTAGCC CGTGAAATTTTTTTTGTTATTTAAATTGATGTCACATTTTTTTCCTATGCTTGTTTTTCATTGTTTATAGTCAGTTCCAA TCTATGTGTCCGAGGTTGCTCCCTACAAGTACAGAGGAGCTCTTAACATGATGTTCCAACTGGCAATCACCATAGGAATC TTTGTGGCGAACCTCCTCAACTACTTTTTCGCCAAAATGAAGAATGGCGAAGGCTGGCGCTACAGTTTGGGTTTAGCGGC GGTCCCTGCAATAATGATAATCATCGGAGCAATCTTCCTTCCAGACTCCCCAAATTCACTGATCGAGCGCGGTCAAGACG CGAAGGCCAAGGAAGAACTGATCAAGATTCGCGGAACCCCTGACGTTGATGATGAGTTTGAGGATCTGGTGGCGGCTAGT GAGGCCTCCAAAGGCGTGAAACACCCTTGGAGGTCTTTGTTGGAGAGGAAGTACAGGCCTCAGTTAACAATGGCCATAGC CATTCCCTTCTTTCAACAACTCACTGGGATGAATGTGATCACGTTCTATGCTCCTGTTTTGTTTAAAACTATTGGTTTTG GAGCCACTGCTTCCCTCATGTCTGCCTTGATCACCGGAGGATGTAACGCGGTCGCCACTCTTGTTTCAATTGGGACGGTT GATAAGTTTGGAAGACGCACTCTCTTCTTAGAAGGAGGTGCTCAAATGTTTATTTGTCAGGTAGTACTTCAATTAATTAA CCTCTATTTAGAAAATGTATTTGTCACAATTAAAATGCATTGAATTTGTTTTTTTGTTACTTATATAAGTTTTGTTCATA ACATGATTGAATGCAGATTGTGATAACCATAGCAATTGCAGTGAAGTTTGGAGTGAGTGGCAACCCTGGTGACCTCCCCC AATGGTATGCTGTACTTGTTGTGGTAGGTATATGCGTCTATGTTGCTGGGTTTGCATGGTCATGGGGTCCATTAGGGTGG CTTGTACCTAGTGAGATTTTCCCACTTGAAGTGCGTTCTGCTGCTCAGAGTATTAATGTCTCTGTTAACATGATCTTCAC CTTTGCCATTGCTCAAATTTTCACTGCCATGCTTTGTCACATGAAATTTGGACTGTTCATCTTCTTTGCGGTCTTTGTTG TTGTGATGAGCGTGTTCATCTATAAGTTCCTGCCGGAGACCAAGGGAGTTCCTATTGAAGAAATGGCGGTGGTGTGGGAG AATCATCCTTATTGGAAGAAGTTCGTGAAATCTGATGATCAGAAACCAGATCCTGAAAGTTAGATTAGT
CDS sequence (LotjaGi2g1v0431400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGGGGCTTACATAGGGAAGGGAAAAAATTATCCCGGTAAACTTACCGGGAGAGTAATCACAACTTGTATCGTTGC TGCATTCGGAGGCTTAATTTTTGGTTATGATCTCGGCATCTCCGGTGGAGTTACCTCCATGGATCCATTTCTGAAGAAAT TCTTCCCTGAAGTCTATGAAAAGGAGCACAACATAAAGCCTTCTGATAACCAATACTGCAAATTCGACAGCCAGATACTA ACCCTCTTCACTTCCTCTCTGTACCTGGCCGCTCTTGTGGCCTCTATTGGAGCCTCCGCCATAACTCGCCTCTTCGGAAG GCGTCTCACCATGATTTCTGGCGGTGTGCTTTTTCTCATCGGCGCAGCCTTCAATTTCTTCGCTCAAGATGTCTGGATGC TCATCATTGGCCGCGTATTTCTTGGTTTTGGAATCGGATGCGCAAATCAGTCAGTTCCAATCTATGTGTCCGAGGTTGCT CCCTACAAGTACAGAGGAGCTCTTAACATGATGTTCCAACTGGCAATCACCATAGGAATCTTTGTGGCGAACCTCCTCAA CTACTTTTTCGCCAAAATGAAGAATGGCGAAGGCTGGCGCTACAGTTTGGGTTTAGCGGCGGTCCCTGCAATAATGATAA TCATCGGAGCAATCTTCCTTCCAGACTCCCCAAATTCACTGATCGAGCGCGGTCAAGACGCGAAGGCCAAGGAAGAACTG ATCAAGATTCGCGGAACCCCTGACGTTGATGATGAGTTTGAGGATCTGGTGGCGGCTAGTGAGGCCTCCAAAGGCGTGAA ACACCCTTGGAGGTCTTTGTTGGAGAGGAAGTACAGGCCTCAGTTAACAATGGCCATAGCCATTCCCTTCTTTCAACAAC TCACTGGGATGAATGTGATCACGTTCTATGCTCCTGTTTTGTTTAAAACTATTGGTTTTGGAGCCACTGCTTCCCTCATG TCTGCCTTGATCACCGGAGGATGTAACGCGGTCGCCACTCTTGTTTCAATTGGGACGGTTGATAAGTTTGGAAGACGCAC TCTCTTCTTAGAAGGAGGTGCTCAAATGTTTATTTGTCAGATTGTGATAACCATAGCAATTGCAGTGAAGTTTGGAGTGA GTGGCAACCCTGGTGACCTCCCCCAATGGTATGCTGTACTTGTTGTGGTAGGTATATGCGTCTATGTTGCTGGGTTTGCA TGGTCATGGGGTCCATTAGGGTGGCTTGTACCTAGTGAGATTTTCCCACTTGAAGTGCGTTCTGCTGCTCAGAGTATTAA TGTCTCTGTTAACATGATCTTCACCTTTGCCATTGCTCAAATTTTCACTGCCATGCTTTGTCACATGAAATTTGGACTGT TCATCTTCTTTGCGGTCTTTGTTGTTGTGATGAGCGTGTTCATCTATAAGTTCCTGCCGGAGACCAAGGGAGTTCCTATT GAAGAAATGGCGGTGGTGTGGGAGAATCATCCTTATTGGAAGAAGTTCGTGAAATCTGATGATCAGAAACCAGATCCTGA AAGTTAG
Protein sequence (LotjaGi2g1v0431400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAGAYIGKGKNYPGKLTGRVITTCIVAAFGGLIFGYDLGISGGVTSMDPFLKKFFPEVYEKEHNIKPSDNQYCKFDSQIL TLFTSSLYLAALVASIGASAITRLFGRRLTMISGGVLFLIGAAFNFFAQDVWMLIIGRVFLGFGIGCANQSVPIYVSEVA PYKYRGALNMMFQLAITIGIFVANLLNYFFAKMKNGEGWRYSLGLAAVPAIMIIIGAIFLPDSPNSLIERGQDAKAKEEL IKIRGTPDVDDEFEDLVAASEASKGVKHPWRSLLERKYRPQLTMAIAIPFFQQLTGMNVITFYAPVLFKTIGFGATASLM SALITGGCNAVATLVSIGTVDKFGRRTLFLEGGAQMFICQIVITIAIAVKFGVSGNPGDLPQWYAVLVVVGICVYVAGFA WSWGPLGWLVPSEIFPLEVRSAAQSINVSVNMIFTFAIAQIFTAMLCHMKFGLFIFFAVFVVVMSVFIYKFLPETKGVPI EEMAVVWENHPYWKKFVKSDDQKPDPES
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 19 | 19 | - | – | |
| PANTHER | 7 | 500 | 494 | 4.6E-285 | – | |
| PANTHER | 7 | 500 | 494 | 4.6E-285 | – | |
| TIGRFAM | 12 | 483 | 472 | 2.7E-120 | ||
| Gene3D | 13 | 490 | 478 | 4.3E-128 | – | |
| SUPERFAMILY | 17 | 483 | 467 | 2.88E-63 | ||
| Phobius | 20 | 40 | 21 | - | – | |
| TMHMM | 20 | 42 | 23 | - | – | |
| ProSiteProfiles | 23 | 476 | 454 | 47.448 | ||
| Pfam | 24 | 487 | 464 | 1.2E-133 | ||
| CDD | 26 | 474 | 449 | 0.0 | – | |
| PRINTS | 31 | 41 | 11 | 1.9E-30 | ||
| Phobius | 41 | 78 | 38 | - | – | |
| Phobius | 79 | 102 | 24 | - | – | |
| TMHMM | 79 | 101 | 23 | - | – | |
| Phobius | 103 | 108 | 6 | - | – | |
| Phobius | 109 | 128 | 20 | - | – | |
| TMHMM | 114 | 136 | 23 | - | – | |
| Phobius | 129 | 133 | 5 | - | – | |
| Phobius | 134 | 156 | 23 | - | – | |
| PRINTS | 135 | 154 | 20 | 1.9E-30 | ||
| ProSitePatterns | 140 | 165 | 26 | - | ||
| Phobius | 157 | 167 | 11 | - | – | |
| Phobius | 168 | 189 | 22 | - | – | |
| TMHMM | 169 | 191 | 23 | - | – | |
| Phobius | 190 | 200 | 11 | - | – | |
| TMHMM | 198 | 220 | 23 | - | – | |
| Phobius | 201 | 220 | 20 | - | – | |
| Phobius | 221 | 281 | 61 | - | – | |
| Phobius | 282 | 304 | 23 | - | – | |
| TMHMM | 286 | 308 | 23 | - | – | |
| PRINTS | 292 | 302 | 11 | 1.9E-30 | ||
| Phobius | 305 | 309 | 5 | - | – | |
| Phobius | 310 | 336 | 27 | - | – | |
| TMHMM | 315 | 337 | 23 | - | – | |
| ProSitePatterns | 336 | 353 | 18 | - | ||
| Phobius | 337 | 347 | 11 | - | – | |
| Phobius | 348 | 371 | 24 | - | – | |
| TMHMM | 352 | 374 | 23 | - | – | |
| Phobius | 372 | 382 | 11 | - | – | |
| TMHMM | 383 | 402 | 20 | - | – | |
| Phobius | 383 | 404 | 22 | - | – | |
| PRINTS | 389 | 410 | 22 | 1.9E-30 | ||
| Phobius | 405 | 424 | 20 | - | – | |
| PRINTS | 412 | 424 | 13 | 1.9E-30 | ||
| TMHMM | 422 | 444 | 23 | - | – | |
| Phobius | 425 | 445 | 21 | - | – | |
| Phobius | 446 | 450 | 5 | - | – | |
| TMHMM | 451 | 473 | 23 | - | – | |
| Phobius | 451 | 472 | 22 | - | – | |
| Phobius | 473 | 508 | 36 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi2g1v0431400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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