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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0436900 |
| Transcript ID | LotjaGi2g1v0436900.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | SUMO E3 ligase; TAIR: AT5G41580.1 RING/U-box superfamily protein; Swiss-Prot: sp|F4JYG0|PIAL2_ARATH E4 SUMO-protein ligase PIAL2; TrEMBL-Plants: tr|O04238|O04238_VICFA Transcription factor; Found in the gene: LotjaGi2g1v0436900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:93335393..93343451) extracted from Lotus japonicus Gifu genome v1.2.
GCACAACTCTGTCAAATCAAAATTGAAAAAGGTATCACCTTTTTGACTGACCATCTCTTGTCACCAAACGTAGAACATGA ACCCTTCGTCGACGTTCGCACTGCCACCACACTTGGCGGCGTGGGTCGGAAGCGGAAAACGAATGCCAGCGTCGATTGCC AACTCGTGTAACATCTTCCAAGCGTTGCGGCATTTGAATTTGTACGTTCAACCTGGCACCCAAAGCAACTCCAAAGAACT TTGTACGATGTGTATCAAACTCGCTCGGTACCATTCATCTTCCAATCATTGCTTCTTCTCTTCTCTTCTCGTCGGTTTTT TAGGGTTTTTTTGTTTTGTTTTGATTCTCTCTGCTTAGCAGATTGTAAATGTGCATTGTCTTTATTTGAAGAAAAACTCA AGTTTCTAGTGTCAAGTTTGAATTTTTAAGCGTTTCATGTAGAGAACAAGTGGTGGGTATTGAAACGCCTAATCAACTGT TACTGTGTGTGTTCTTTACGTTTCTTGCGTTCATCATTGCCATAGTAGTATGTGATTTTTACCATGATACTTGAAGAAGT AGCAATGAATAAGCACTATGCAAATGTGATTTTATTAACTAGATTCACATAGCCTACCGACTTAATGTGATATTCGAGTC TCGAAGGATTAGTCACAGGGCTGCCGGCTGTGGGATACCTTCGGAAAATAACATTAACTAGATTCACTTTGACATGCAGA GGTCTTGATCATGCACTTACCAATGGCGAATATCCGGAAATAGCTAATAATCTGCCTATGTTGATGAAACAGGTTATTGT GATTTCCATTATATGGTTGGTGTGGATTACTATTTCTGGGGTGGTTGGAGGGTGTGGGGATAAGGAAGAAATCTATGTTT GAAGGTTTTAGCCTTTTAGGCATTTACTTTTGTTATTCCTTGCAGATTTGTCATCGAAACCATGATGAGGAATCACAAGC AGCGATAACGGTTTTGATGATGTCTGTAAAGGTAGGTTCAATTTTGGCGCGGTGTTTCTTGTTGCTATTAATAATTTGTT GAATTTCCATTAATTTTGACTTAGGAAAACATGCTCTGTTTTTGAGTTTTGGGAAGAAGAACAATTCATAAGTTTTGAGC AAATACTTGGGTTGGGATTGACTACATGATAAATTGGCGAAACATTTCATGAATAAGACATTTGAAAGCTTTGTGCCATA ACATTTATAGAGTTATGAATTTCCTACTGACATTTTTTTTAAAAAAATTATAGAATGCCTGTAAATTTGGATGGTTTCCA AAGAAAGATTCAGAAGAACTTTTAGCCATTGCGGATCAGGTTTGCTCTTCCCACCACCCCTCCCCCCTTTTTGCTATTTG GCGTGTTGTCACCCCTATGTTTCTGAGAATCATTGTTCATAGTGTAGCAAGGAAAGATCTACAGCACTATGGAGAATGTA AATGATGGACCTAGTTCTTGCCATTCCACAATATCAAAAATAATGGAGAGGTAGGGATCCCTGGATCTGTGTATCTTCTC CTACATCTTTTCTTTTAATAATTTGCTTTTATGTCTTCTTATTTAACTTTCAACTATGATCTATCACTGAATATAAGTAT AAAAACCTATGACAAACCAAAAGACCTACAAGAAACAATGCACATTTGATATTAGATGATCTTTAACTTTATCTGATATG CATCAGTAATAATTTGCCCATATGTGGATTTCCATGCAGGTTCTATCCGACAATGAATCTGGAACCAATACTTGTGTCAA TTGAAGCCAAGGTGGATCCTTATGCCTTGTCAAATATGCTCATATTTTATATTGACAACATATTTAATATTATTTTACCT GCAATGCAGCCTGGATATGGAGCTTCTGCTGTTGACTTCCATATTACAAAGAGTAGTTTTGTACCAGATAAAAGAATTGT AAGAGCCCCTTTAATTGAATTGTTTTGGTAAAATGGACAAAGTCCTAAACTTATTTTCCATCAAAATAAGTCTAGAACTA TTGCTTTCTATTTGTATATAAATGACTTGTCTACGACAATCATATTTAACATTCTTATTAACTTAGGTGTGGCAAGTTGT GTATGTTAATTTTTAATATTCGTATTAACTTAGTTGTCAGGTGTGGCTTTATTTCAAGTATCACAACTTTTCAAAACCTA GTGCAGACATGTACTTGTGAATCCTGTACTTTTGAGATGGAGAGTATTTCATGGTTCCTTTATACAAAAAAAATCATTGC ATGATCCTTGTGAATTATTAGTAATACCTAGTAGTTTCTTACTGGAAGATGTAGTTCTTAGTTCTTATCACAGTTGAGCT TGGTTCTGTACTGTGAACCATGTTCCATGCCTTGCTTTAACTGATCCTATGTTTATAATTGGGCATGTGCATCCTTTGTA ACTTTGCTTGTTTCTTCAAAAAAAAAAATGTTGGTGTGGTTCCTTTCTCATTTCTATCCATTTTCATGTTATTTCTTGGT CCACTCATCCGCAACCATTATTGCTTCATTATTTGATCTAAGGTTGAGCATATTTTAGTTTCTTTTGTACCTTAGTTGCT ATCTTTTATGTATTTTACCTTTATATGCTATCTTTTTCAATGTTATATGTTATTTGAACACATCTCTTTATCTCCTTTCT TTTTTCTAATGCTTATGGACATCTAACTTGTATCACATACTTTAACTTGCAGTGCTTATTGGTGGCGCAAACTGATAACA TTGAGACATCTGCATGCCTTATCAATCCTCCGGAAGTGACGTATGGTTGCTTTTAACTTTTTTATTTGATTGTGTGGATG AGTTCTGCATTGATGCTGACTTTCCCCCCAATCTTTTGTAGTTTTCTCCTCAATGGAATAGGGGTATTCAAAAGGACTTG CGTTCCAATGGTCTGTTTATATGTTTCAAAATACACCCTAAAACAGTTAGTTTCAAATGCTTCCAAGGGTGTGACACCAA TTTCTTATTTATGATATTTTCTTTCTCAGGAAACTGGACCTCAGATGCCAACTAATGTGACTAGCATGCTTAAATTTGGG ACAAATCTTCTTCAAGCTGTGGGTCAGTTCAATGGTAAGCGTTTAAAACTAGTTTTCTTTTCTTGTCATCCTGGCTTTCA TAATATGCATCTTACCGTATTCTAACCATTATCATTTTAAAGGGCATTATCTTATAGTTGTTGCCTATTTAAGTGGCAAA TCCTTGCCTAAGCATCTGATTCTTCAAGATTATGTTCAGCCTGCTGTAACTTCTGTTTATTCAGGTAAAATTTTGATGTT TAGGGTAAATGTACCCTAATATTTTTTCTCATTGATCCAGCATTTACAATTCATTGTTATATTTTATTTTTTGACATTTT GATTGTTCATTCTTATTGTTCTACATCTTTCTTTGTATATACACATCAATGAATTCAGATGTTACTGAGAGGGAATCACG AATCTCACTTAATTGTCCCATAAGGTATGCTTTGATCTCCTCCGTTCATAATCTTGATCACCTTTTCTTCATTGCTTTAT CTGTTGCTAGTTTTCTCATCTTCAGATTGAGCACAGTGGTATCATAGATTATAGTGTTTATTTGAGATCCATTTTAGTCT CCCATTCTCTCTGAACCCCTTATCCATTATATTGAATAAGGGAGCTAGTTGTTCATGCTCTTACGCTTTGAATCTGTTCA CAATTCACTTGTCAATGGTCTGATAATGTTTTGATTATGTGTTGAAATTTTTATTAGAACAACTTTAAAATCATGCCTTA ATTGTAGAAAGTTAGAGTTCCCAAGTTAAAATTGTCTCTAATTGGCCGGTTTCTTGTTTTGGTCATTATAGTTTTTTCAG TCAGTACTTTTTTTTGTTATATTAATTTCGTGGAACCCCCTTGTCCTATTTTTGCTTCTGGTAGATGTTCAGCTTTCTTC AAACCTTTCCCTGCTGTATAACGGTCAGAACTAAATGAACAATGGCCACGTTGTCTTGTTCAGATTGCTTAATTGACTTT CCAGGATATTAATAAGTCTATACTTAAATGTGTTTTCTTGAGAAGCTTTCCTCTTTATCTCAATTCCAAATTTCCAAATG AATATTTTATATGTCTAATTTCCTATCGAGTTTCCAGAACCTGCAGTCTGTTTCTCAATCTTTTATAGTCTTAAAACACT ACTCCCTCTGTCCCTATTTATAAGTCACCTTTACCTAATTCTCTAGGATTAAGAAAAGCAGTTTCTAGCAACAAATTTGT CAAAAGTTTTATTAATTTTCCCAGATTACCCATGAATTTCTCTCTTCAAGTTAAATTATTTTTAAAAAATGACATTATGT TTTTCATATTAAATATTAAATGTTTCATTGACATTATAAAGTGACTTATATTTTGAAGTTTTCTTTGTCTTGCTAGTTGA TTAATCTTCAGGCTTCTCTTATGTTTATTTATTGCTTGGTGTATCATTTGTTCAATTATTATTTAAGTTGGTTTTTTTTT ATGACAATCCTTTTATTAAACATTACTGATGATGATGTACCAAAGAAACTTTATTTATGATGAAATTTGATAGTCCTTTG TGTGTAATCTTTACAAAACAGTTTGACTCGCATCAAAACTCCCGTGAAAGGGCATTCATGCAAACATTTCCAGGTGAGTG ATTCCTGTATTGGCATCACTTAATAATATGAAGAATGCTGAGGGTCTTAGCTAATTACTTATATTGTGCGTTCATTACGA TTATGACTGTGATATTATTTAGATTTGCAGAGGTTGATTGATTTGTTGTCTATTGCTAGGTAATCCTAAGGAATAGAATA ATCTAAATTACCTTAAATTACTCTTAAGATATGATCAAGATATTATGAGATATCATTCTTATATTCTGACAGTATGTTTT GTTTGCACGATTGAAGTTAAATATGACTGAATTTTGCTTAAAAAGCTATATAATAATACCTTTTTTATGATAAAGAGAAA ATTTCATGACGTGGTTCATAGCTCTAGGTTTGTGTGTGCGGGTTGGTGTATCTATGTGTCAATATATTCCCAACTTGTTT CTTCTCCTCTACCTTATGATTCTGTTCTCTTCTCTGCAGTGTTTTGACTTTCACAACTTCATTCATATAAATTCAAAGAA GCCATCCTGGCGCTGCCCTAGTTGCAATCAGTATGTCTGCTATGCAGATATTCGTCTTGACCGAAACATGGTTGAGGCAA GTTTATTTAGTTCTTCAGTCCTTCAACTGATTTACCTTCTTGTTATGCTGTCCTATAGTCAGATTGGTATCATCTTAAAA TTGGAAAATTAAAATTTTGGTTATTTCTTTTCACCTTAACCTTAGAGCTAAATTCCCTGCCCTCCCCCAATTTGTAAGGG TTCACCAAATTGACCCTAGGGATAATAGAAAGGTTGAAAAGGAAAACTAATTCTCTTTTTTTCTCATTTTGAATATAGAT CCTGAAAAATGTTGGTGAGAACATTGTCGACGTGACTGTACTTGCAGATGGATCGTGGACGGCAGTCTTGGAAAATGATT ATCATGTGGCTAAGATAAAGGATAAAGCCCCCAACTGTGAAAAGGAACAGGCTGAACTGCAAGAATCTACTTGTTCTCCT AGTACTGTTGCCAATGTTTTGGACCTCACCTGCTATGATGATCATTTGGACATGATGGAGACTTGTGAAACTGAAGATAG AAAACCTTTCCAGGAATCTGTTGCTAGTCAAAATGTCACCCCAAGTTTAACTTACTCGGGAATGAACTCTACCGCTGTTC ATGAAAATGTTGCTGCTCACATAGAAGATGACTTTGGGTCTAGAGATTATATTGCTCGTGCACCAGTTGGTGTCTCCGAG CATCCTGTTCTGCCAGATACCATGTCTCCTGTATCTAATCTGGAAGCTGAGGGTCATGGCATTATCCAAGCCATTAACTC TGCCCCGCATAATCAATTTACTTCACCATATAATTTTCAGATGCAGTCGAATATAAACTCAGTGGCTAACGAGTATGGGA GATCATCTTCTATACCAAGACACATTAGTAGAATTCCTGTAGCTATTCAGGGCCTCCCAGTCCAATCACAGCTGTCGGGA CCACAGCAAAATTCAGTAACTAATTTGAATTCCTTGCTACTCAGTGGTTCCTCCTCTCCTCATGTTTCTTTGACGAATCC AGCCTCTATAGATGTTAATATCTTAATGAATGATATGGATGTCCGGCAACTTCTTACTCAGTACCCACTTACTATGGCTC AGGTCTCAGGTGTAAATTCATCTGCATTGCAGAACCACTCAACAATACAGGTCTACTTTATTAGTGTTCTATTATTGCTC CTTACATTGCAACATTGCATGGCTGTTTTGAGGTTGCATAGTCTGTTTTGCTATTCTGTATAATGTTGTTCCTTAATGTT TTCAGTGTTGATCTGTTGTGTTTCCTCTGAAGGAAAACATGACAACTGCTCATACTTAAAAGAAAAATACACTGAACTTG GAATTTTGTTGTAAATTCGTTTTAGGATTAATAGGGTTAATATCCATTTATCCAAAAAGTTAGTGGTAATGCATGAAGTT GGTTTCGTGAAAGAATGAATAGTAACTTACTAACATTAGTTTATCCTATCTAAGAAATTATGTAAGATCAAGATATAAAG GGAACCACTGAAGGTGTGTGCCTGTTCTATTTTCTTTATAGTCTTTCTCCAACTACCTTTCAGTACTTAATAAATATATT TTATCGTGCTGTTCGTATTTTTCAACTCTTATACTTTGATAGTCATTGATGCCTGTAATGTGTTTCATTCATCTATTAAG TTGAAAATTGTTAGAGGAATCTCACTTTTATGTGTGTTTCTTGGTGTTTAGGACTCCTGTGCTAACTTTTTACTTTTCAT TGAACTCAGAACCGAGGGCCATCAGTTGTTAATATGTCAGCACGAACTCAATCGCAAAACCCACTAAGACCAACTCAGAA CCGAGGGCCATCAGTTGTTAATATGTCAGCACGAACTCAATCGCAAAACCCACTAAGACCATCTGGATTTTTTAGTGAAT TGGGAAATCCACACTTGCAGCAAGCTCTGAATCCCAGACCACTTCAACCAATGCAATCTTGGCCCTGGATGCAGCAAGGT GGTTCACAAACTGGTGTTGCTCAGGCAGCTGCAGCTACAGCAAATATCCAACAAGCTAGGGTTGTGGCTTCTGGCAGACA AGGAAGTTCTCAAGCTGGGATTGTTCAGACAGCTGGAACTAATTCCAGTTTACAGCAAGCTAGATTTATGGCTGCTGCCC ATGCGTCCAGACAGTCACAATCTTCTACAGCTCAATATCAATCACCCGCAGCAGCTGTACAGTCAGTTTCTAGGCCTGAA GATTTGTTCAGTTCGCAGCCAGACCAGAACTGGCGTCCTACACGGCGAATGCGTGGAAGTATTGATCTTGGAAGTCAGCA GTATTCTGAGGCTGTAAGGCAGCAAATAATCATGCCTACACAACCAGTTCAAAGTTCAAGACCACAAGGTCCACCACTGG TTCCAGTTCAAAGTTCAAGACCGCAAGGTCCACTACCAGTTCCAGTTCAAAGCTCAAGACCACAAGTTCTGCCACCACCA CTTCGGCCAACATCGAAATAATAGAAATGCTGGAAATTATTCTCCTAGTACGTAATATTTTACGAAGCCTCTACTTGGTT GATTTAAGATAGCTTCACTTCAGTCTCTTCTGAGCTTAGGCTGTAAATACATTCATCTAATAGATATATGGGGTAACACA AGTACATGTTTTATTTTGTTCACCACAGAATTGAAAGAGGTTTTTTTTTTAACAATGGAGGAATTGAATTATCATGGAGT GGACAATTCAAGTACATGTTTTATTTTGTTCACCACATGAGGACGTGAAATCAGGATCTCATTCACCCTCCATTCTCATG TGCTAGGATTTATATATTCGTGTTCCAATTAGAGAGATTTTTCAACGTTTACCACGTTTTTGTAAATTGTAACCGGTGCC TTTTATTTTATTTCTTTAACAAAAATGAGACGTGTAGTATTAAATTAATTACATTTCAT
CDS sequence (LotjaGi2g1v0436900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACCCTTCGTCGACGTTCGCACTGCCACCACACTTGGCGGCGTGGGTCGGAAGCGGAAAACGAATGCCAGCGTCGAT TGCCAACTCGTGTAACATCTTCCAAGCGTTGCGGCATTTGAATTTGTACGTTCAACCTGGCACCCAAAGCAACTCCAAAG AACTTTGTACGATGTGTATCAAACTCGCTCGAGGTCTTGATCATGCACTTACCAATGGCGAATATCCGGAAATAGCTAAT AATCTGCCTATGTTGATGAAACAGATTTGTCATCGAAACCATGATGAGGAATCACAAGCAGCGATAACGGTTTTGATGAT GTCTGTAAAGAATGCCTGTAAATTTGGATGGTTTCCAAAGAAAGATTCAGAAGAACTTTTAGCCATTGCGGATCAGCAAG GAAAGATCTACAGCACTATGGAGAATGTAAATGATGGACCTAGTTCTTGCCATTCCACAATATCAAAAATAATGGAGAGG TTCTATCCGACAATGAATCTGGAACCAATACTTGTGTCAATTGAAGCCAAGCCTGGATATGGAGCTTCTGCTGTTGACTT CCATATTACAAAGAGTAGTTTTGTACCAGATAAAAGAATTTGCTTATTGGTGGCGCAAACTGATAACATTGAGACATCTG CATGCCTTATCAATCCTCCGGAAGTGACTTTTCTCCTCAATGGAATAGGGGTATTCAAAAGGACTTGCGTTCCAATGGAA ACTGGACCTCAGATGCCAACTAATGTGACTAGCATGCTTAAATTTGGGACAAATCTTCTTCAAGCTGTGGGTCAGTTCAA TGGGCATTATCTTATAGTTGTTGCCTATTTAAGTGGCAAATCCTTGCCTAAGCATCTGATTCTTCAAGATTATGTTCAGC CTGCTGTAACTTCTGTTTATTCAGATGTTACTGAGAGGGAATCACGAATCTCACTTAATTGTCCCATAAGTTTGACTCGC ATCAAAACTCCCGTGAAAGGGCATTCATGCAAACATTTCCAGTGTTTTGACTTTCACAACTTCATTCATATAAATTCAAA GAAGCCATCCTGGCGCTGCCCTAGTTGCAATCAGTATGTCTGCTATGCAGATATTCGTCTTGACCGAAACATGGTTGAGG CAAGTTTATTTAGTTCTTCAGTCCTTCAACTGATTTACCTTCTTGTTATGCTGTCCTATAGTCAGATTGGTATCATCTTA AAATTGGAAAATTAA
Protein sequence (LotjaGi2g1v0436900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNPSSTFALPPHLAAWVGSGKRMPASIANSCNIFQALRHLNLYVQPGTQSNSKELCTMCIKLARGLDHALTNGEYPEIAN NLPMLMKQICHRNHDEESQAAITVLMMSVKNACKFGWFPKKDSEELLAIADQQGKIYSTMENVNDGPSSCHSTISKIMER FYPTMNLEPILVSIEAKPGYGASAVDFHITKSSFVPDKRICLLVAQTDNIETSACLINPPEVTFLLNGIGVFKRTCVPME TGPQMPTNVTSMLKFGTNLLQAVGQFNGHYLIVVAYLSGKSLPKHLILQDYVQPAVTSVYSDVTERESRISLNCPISLTR IKTPVKGHSCKHFQCFDFHNFIHINSKKPSWRCPSCNQYVCYADIRLDRNMVEASLFSSSVLQLIYLLVMLSYSQIGIIL KLEN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 380 | 380 | - | – | |
| PANTHER | 64 | 371 | 308 | 2.9E-115 | – | |
| PANTHER | 64 | 371 | 308 | 2.9E-115 | – | |
| Gene3D | 272 | 382 | 111 | 1.2E-25 | ||
| ProSiteProfiles | 299 | 376 | 78 | 35.058 | ||
| SUPERFAMILY | 308 | 371 | 64 | 8.03E-5 | – | |
| Pfam | 310 | 358 | 49 | 2.7E-20 | ||
| CDD | 311 | 358 | 48 | 7.48982E-22 | – | |
| Phobius | 381 | 400 | 20 | - | – | |
| Phobius | 401 | 404 | 4 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi2g1v0436900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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