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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0442500 |
| Transcript ID | LotjaGi2g1v0442500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box/LRR protein; TAIR: AT4G05460.1 RNI-like superfamily protein; Swiss-Prot: sp|Q9S9V9|FBL23_ARATH Putative F-box/LRR-repeat protein 23; TrEMBL-Plants: tr|A0A072V906|A0A072V906_MEDTR F-box/LRR protein; Found in the gene: LotjaGi2g1v0442500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:93832320..93834296) extracted from Lotus japonicus Gifu genome v1.2.
AGAAAACAGAGAAGAGATGATAGGTGGGGAAAGGTCTTCTCCTACGAGTAGGGTGCCAAGCTCAAAGAAACAACAGAGGC TTCTGAAGGAAGCTAAATACGGATTCTGATTTCTGAATGCTTAAAAACTAAGTCATTTCTTCCATTTGGGACTTAGCTAA AGAGAGAACCCACTAGTCTCAATCTTAGACCTCTTCGCCCTTTGAGTGCAACAGGAGAGAACCCGTAGCTTCAAGCAAAA ATCACTTTTCTTCAACTGGTACCTCTTTCCTTGTTTATTTCGATTTGTCTTTTTGCACTTGCTTTCTCATTTATCTGTCA AAATGTAATCTGCCAAAAGAGATTAATATTATGTTGAGTTTGAATGTTTAAGGTATCTGATTCTCATTTTGAAGCAAGAC ACATGATGAACATATATATGTCTATCCATGCATGAGCCATCACTGCTATTTCCATATAAATTTGTGAACACAACCATGAG GAAGAAAAAATATATTAAAAAGTTTGAACACAGACACTGTTCAGAATCACATACAGACACACAACCACCGTTCCCAGCCA ACAAAGAACGTGAGAAAAATCACCTTCAGGTCCCTTCACCGGAAACCATCACCATCAAGCCGTACCCGAACCAACAAAAC CCCAACTTCCCCCATCACCATGACCATTAGGGAAGAAGAAGGAAACCGTTTGATATTCTCTGATAGGTTTATAAATGCAT TAATTCTTATGGTTATGTTTGCAGGATGGCATTGGCAGAAGGAGTCAGCAGAAAAGGGCCAAACTGGCTTGCACTTCCAA GAGAAGTGATAGAAAACATATTGCAAAGGCTTGAAGTCGTTGAAATTGTGACGCGTGCAAGTCTAGTGTGCCCTTTATGG TGGAACATTTGCAAGGACCCTCTCATTTGGCGCACCATTTCCATCACCCATCCCGGATATTCATTCTACAATTCGGTGGA TATCTGTTCCTATGCCATTAGAAGAAGTTATGGTCATCTGGAAGACATTAGTATTGACTCCATTGCCACTGATGATCTCC TCATGGACATTGCTAATAGGTACATTTTCTTTCTGCTTGCTTCCTTGTGTTATATATACGATAAAGATTTTCTGATTATA ATGGGTATATATATTCTTATTTTCTTTTGTCATGCATTATATGTAACTTTGTGTCAAAATTTCTTCATATGTTACAGCAC AAGTATTCTACGTCGCTTATGCATTATAGACTGCGACAGAATATCAGATAGAGGGATGATGGAAGCTGTGAAGAAGTTTC CATTATTAGAGGAGCTTGACATTTCATATTCAAGCAACCTAACTAAAGATTCTCTTGAAGAAATTGGCCGGTGTTGTCCT TTTTTGAAAACATTAAAATTTAACCAGATTAATTACTGGTCATCTTCCTCCGATGATAATGTGGCGTTTGCTATAGCTAG AACCATGCCTGCTCTCCGCTATCTACAGATTATTGATAACACTATCAGTAATGTTGGCTTGCTTGCCATTCTCAATGGTT GCCCTCTGCTAGAATTTCTTGACCTCCGATGCTGTGAATTTCTTGATTTGAGTGGTAGCTTAGGGAAAAAGTGTCGTGAG CAGATCAAACATTTACTGCTTCCCACTCCAGATGATAAATGAACGAAGTATGTAGATCTCTATTTGTTGGAAGTATGTGT TGATCGACATGATCAGCTGGGAGTTTATTATTATAGTTTTTAGATCATGCCATCATGGACTACGGTTATGATGACCATTG GGTACTATATGTACAATACAAATGAGTTTATCTTTTTTGTCCTTCAATATTTCATCTAGTTTTTATTGTTATTTTTAGCA TAAAAATCAGTTTCTAAGCATAACACATTCATCGTTGCTTGGTTACTACCACTTTCATCTGTTTCTCTGGGTTGATTATA TTGTGTTTCTCTGTGATTGAAACCTGAGTTCAGGGCCAAAACTTATTTGCTTTAAAG
CDS sequence (LotjaGi2g1v0442500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATTGGCAGAAGGAGTCAGCAGAAAAGGGCCAAACTGGCTTGCACTTCCAAGAGAAGTGATAGAAAACATATTGCA AAGGCTTGAAGTCGTTGAAATTGTGACGCGTGCAAGTCTAGTGTGCCCTTTATGGTGGAACATTTGCAAGGACCCTCTCA TTTGGCGCACCATTTCCATCACCCATCCCGGATATTCATTCTACAATTCGGTGGATATCTGTTCCTATGCCATTAGAAGA AGTTATGGTCATCTGGAAGACATTAGTATTGACTCCATTGCCACTGATGATCTCCTCATGGACATTGCTAATAGCACAAG TATTCTACGTCGCTTATGCATTATAGACTGCGACAGAATATCAGATAGAGGGATGATGGAAGCTGTGAAGAAGTTTCCAT TATTAGAGGAGCTTGACATTTCATATTCAAGCAACCTAACTAAAGATTCTCTTGAAGAAATTGGCCGGTGTTGTCCTTTT TTGAAAACATTAAAATTTAACCAGATTAATTACTGGTCATCTTCCTCCGATGATAATGTGGCGTTTGCTATAGCTAGAAC CATGCCTGCTCTCCGCTATCTACAGATTATTGATAACACTATCAGTAATGTTGGCTTGCTTGCCATTCTCAATGGTTGCC CTCTGCTAGAATTTCTTGACCTCCGATGCTGTGAATTTCTTGATTTGAGTGGTAGCTTAGGGAAAAAGTGTCGTGAGCAG ATCAAACATTTACTGCTTCCCACTCCAGATGATAAATGA
Protein sequence (LotjaGi2g1v0442500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALAEGVSRKGPNWLALPREVIENILQRLEVVEIVTRASLVCPLWWNICKDPLIWRTISITHPGYSFYNSVDICSYAIRR SYGHLEDISIDSIATDDLLMDIANSTSILRRLCIIDCDRISDRGMMEAVKKFPLLEELDISYSSNLTKDSLEEIGRCCPF LKTLKFNQINYWSSSSDDNVAFAIARTMPALRYLQIIDNTISNVGLLAILNGCPLLEFLDLRCCEFLDLSGSLGKKCREQ IKHLLLPTPDDK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 8 | 58 | 51 | 2.5E-8 | – | |
| PANTHER | 8 | 244 | 237 | 6.5E-81 | – | |
| PANTHER | 8 | 244 | 237 | 6.5E-81 | – | |
| SUPERFAMILY | 11 | 77 | 67 | 1.7E-12 | ||
| ProSiteProfiles | 11 | 58 | 48 | 10.981 | ||
| Pfam | 13 | 59 | 47 | 7.2E-8 | ||
| Gene3D | 59 | 246 | 188 | 1.8E-27 | ||
| SUPERFAMILY | 71 | 231 | 161 | 1.49E-17 | – | |
| SMART | 106 | 131 | 26 | 8.9 | ||
| SMART | 132 | 157 | 26 | 0.51 | ||
| SMART | 188 | 212 | 25 | 21.0 | ||
| SMART | 213 | 236 | 24 | 260.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0442500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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