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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0443200 |
| Transcript ID | LotjaGi2g1v0443200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Scarecrow-like transcription factor 3 family protein; TAIR: AT1G50420.1 scarecrow-like 3; Swiss-Prot: sp|Q9LPR8|SCL3_ARATH Scarecrow-like protein 3; TrEMBL-Plants: tr|G7K9A5|G7K9A5_MEDTR GRAS family transcription factor; Found in the gene: LotjaGi2g1v0443200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:93890717..93893310) extracted from Lotus japonicus Gifu genome v1.2.
GTAAAATTAAAATTACGATAAGCAACCATACAAGTTAAAATAAGTTGTTGCTGTTAATTGTAATTTTGACTTTACGTGAT TTTTCACAGTGTATTCAAACATGCATGGGAGCGCGCACACACCCACTAGGAAACAAAACCGAGGGCAATGTTTGTCTTTG CTAAGGCATGTTTGGATTGTAGCAACCTTGTGGAATATTAAAGGGTCTTTGGGCAGCCCCGATTCCCTATCCAGCGAAGG TAAAGACAAAAGAAAACGTCTAAGATGGGATGTTTTGGTGAGAAAAGAAACAAAAGTCTCTAGAGAGAGAAAGACAGAAG ACACAGTACCACTCTCTCTCATGAATTCCACACTCCACTGAGAAGGACAACGATACAATAAAGACAAAGGGACCCTTCAC GCATTGTCGACAACGTTAGCCATGAACAAGTCCTTCAATCCCGAACTTGTATCCAAGCATTGAATTCCACTCCCCATACA AACAAACAAACAAACAAACTGTTCAAAACCAAACCAAACCAAACCCCATTCTGGTTGTTCACAAAACAAGCTTTGGAATT TTCATGGGGCTTCGTCTTGGTTCTTGTTCAATTAGAAAACCCACCAGGGATTAAGCTTTTCCTTGTCCGCTTCGTTAATT CAGCTAATGTGGTTTTGGTAGGGTTCATTCCTCTTCCTTAAAATTGTGCTGAATTACTGGAAATTCTGTTTTTTATTATT TAACCTGTCTGTCCCATTCTCCTTTGATTTCCGTGTGGGATCTGCAGAATTCACCTTAGTTTTACACCCCCAGTTCCTTT TGCTAAACGTTGTGTCTTGTATTTGTATTTTCTTCTTTGTTCCATTTTCATTGGCTTTGCATTGTCAAGTGTGAGATATT CATATCTTAGAGCCGAGCCTCTCAAGTTTCTTGTTTAATCAAGTTTGTGTATTGTTGTTGTTAAGATTGTTACATGGAAT CTATGTTACAAGAAGAAGGGTCATCTTCTGTAACTTCCTCACCTTTACAGTTCTTCTCCATGATGTCACTTTCACCTAGC ATAGGATCTCCTTACCCTTGGCTTAGAGAATTGAAATCTGAGGAAAGGGGTTTGTACTTGATCCATTTGTTGCTCACTTG TGCAAACCATGTAGCTGCTGGTAGTCTTGAGAATGCAAACATCACACTTGAGCAAATCTCCCAGCTTGCCTCCCCGGATG GCGATACCATGCAGCGAATCGCTGCATACTTTACTGAAGCGCTTGCCGACCGGATACTCAAAACATGGCCCGGCCTCCAC AGAGCCCTCAACTCCACGAGAATAGTTATGGTTTCTGAAGAAATTCTTGTGCAGAAGCTCTTCTTTGAGCTTTTTCCGTT TTTGAAGGTAGCATATATTCTGACAAATCAGGCTATTATTGAAGCTATGGAAGGGGAGAAAATGGTTCATATAATTGATC TCAATGCTGCTGAGCCTGCACAGTGGATTGCTCTCCTTCAAGTTTTGAGTGCCCGTCCTGAAGGCACTCCTCATTTGAGA ATTACTGGGGTCCATCAGCAGAAAGAGATTCTGGATCAGATGGCTCATAAACTTACTGAAGAAGCAGAAAAGTTGGATAT CCCATTCCAATTCAACCCTGTACTCAGCAAGTTAGAAAATCTTGATTTTGACAAACTTCGTGTGAAGACTGGGGAGGCGC TAGCAATAAGTTCTATTATGCAATTACATTCCCTTTTGGCCTTGGATGATGAATCCGGGCGGCGAAAATCTCCTCTTCTG TCTAAACATTCAAATGGAATTCACCTGCAAAAGGTCTTGCTCATGAACCAAAACACATTGGGTGATTTCCTCAAAAAAGA CATGGTTAATAGCTATAGCCCAAGTACTGACTCTGCCTCATCTTCACCGGTATCTTCAACGACTTCGATGAATGCGGAGA GCTTTCTCAATGCCTTGTGGGGATTATCTCCGAAGGTCATGGTTGTAACAGAACAAGACTCTAATCATAACGGTTCCACT CTGATGGAGAGGCTACTGGAGGCTCTATATTCTTATGCAGCATTGTTTGATTGTTTGGAATCCACTGTCTCAAGAACATC ATTGGAGAGAATAAAGGTGGAGAAGATGCTTTTCGGTGAGGAAATCAAGAACATTATTGCTTGTGAGGGAGCTGAAAGAA AGGAAAGACATGAAAAGCTGGATAAGTGGCTCCAGAGACTTGATGTATCTGGGTTTAGCAACACGCCTTTAAGCTATTAT GGCATGTTGCAAGCACGGAGGTTCCTTCAGAGCTATGGTTGTGAAGGATATAGGATGAGGGAAGAAAATGGTTCTGTAGT AATGTGCTGGCAGGACAGGTCCTTGTTTTCAACAACAGCTTGGAGACCTAGGAAGTAAGAGTGAGTAAGTTCAAGCCACA AAGGATGGAAAAGAAGAAAATAGATATGAAGCAGTAATGGTTAGAGACTTAGAGTCTTAAGGTCTTCAATTTTTCTTTTC TTTTCTTGATTTGTATGAAAGAGTCTTCCCAATATGTTAATGAGTATTCATCAATATTAATTTAGAGATACTTCTATTTT CATCCTTCCTAGTTAAAAAAAAGAGTAAACAATG
CDS sequence (LotjaGi2g1v0443200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAATCTATGTTACAAGAAGAAGGGTCATCTTCTGTAACTTCCTCACCTTTACAGTTCTTCTCCATGATGTCACTTTC ACCTAGCATAGGATCTCCTTACCCTTGGCTTAGAGAATTGAAATCTGAGGAAAGGGGTTTGTACTTGATCCATTTGTTGC TCACTTGTGCAAACCATGTAGCTGCTGGTAGTCTTGAGAATGCAAACATCACACTTGAGCAAATCTCCCAGCTTGCCTCC CCGGATGGCGATACCATGCAGCGAATCGCTGCATACTTTACTGAAGCGCTTGCCGACCGGATACTCAAAACATGGCCCGG CCTCCACAGAGCCCTCAACTCCACGAGAATAGTTATGGTTTCTGAAGAAATTCTTGTGCAGAAGCTCTTCTTTGAGCTTT TTCCGTTTTTGAAGGTAGCATATATTCTGACAAATCAGGCTATTATTGAAGCTATGGAAGGGGAGAAAATGGTTCATATA ATTGATCTCAATGCTGCTGAGCCTGCACAGTGGATTGCTCTCCTTCAAGTTTTGAGTGCCCGTCCTGAAGGCACTCCTCA TTTGAGAATTACTGGGGTCCATCAGCAGAAAGAGATTCTGGATCAGATGGCTCATAAACTTACTGAAGAAGCAGAAAAGT TGGATATCCCATTCCAATTCAACCCTGTACTCAGCAAGTTAGAAAATCTTGATTTTGACAAACTTCGTGTGAAGACTGGG GAGGCGCTAGCAATAAGTTCTATTATGCAATTACATTCCCTTTTGGCCTTGGATGATGAATCCGGGCGGCGAAAATCTCC TCTTCTGTCTAAACATTCAAATGGAATTCACCTGCAAAAGGTCTTGCTCATGAACCAAAACACATTGGGTGATTTCCTCA AAAAAGACATGGTTAATAGCTATAGCCCAAGTACTGACTCTGCCTCATCTTCACCGGTATCTTCAACGACTTCGATGAAT GCGGAGAGCTTTCTCAATGCCTTGTGGGGATTATCTCCGAAGGTCATGGTTGTAACAGAACAAGACTCTAATCATAACGG TTCCACTCTGATGGAGAGGCTACTGGAGGCTCTATATTCTTATGCAGCATTGTTTGATTGTTTGGAATCCACTGTCTCAA GAACATCATTGGAGAGAATAAAGGTGGAGAAGATGCTTTTCGGTGAGGAAATCAAGAACATTATTGCTTGTGAGGGAGCT GAAAGAAAGGAAAGACATGAAAAGCTGGATAAGTGGCTCCAGAGACTTGATGTATCTGGGTTTAGCAACACGCCTTTAAG CTATTATGGCATGTTGCAAGCACGGAGGTTCCTTCAGAGCTATGGTTGTGAAGGATATAGGATGAGGGAAGAAAATGGTT CTGTAGTAATGTGCTGGCAGGACAGGTCCTTGTTTTCAACAACAGCTTGGAGACCTAGGAAGTAA
Protein sequence (LotjaGi2g1v0443200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MESMLQEEGSSSVTSSPLQFFSMMSLSPSIGSPYPWLRELKSEERGLYLIHLLLTCANHVAAGSLENANITLEQISQLAS PDGDTMQRIAAYFTEALADRILKTWPGLHRALNSTRIVMVSEEILVQKLFFELFPFLKVAYILTNQAIIEAMEGEKMVHI IDLNAAEPAQWIALLQVLSARPEGTPHLRITGVHQQKEILDQMAHKLTEEAEKLDIPFQFNPVLSKLENLDFDKLRVKTG EALAISSIMQLHSLLALDDESGRRKSPLLSKHSNGIHLQKVLLMNQNTLGDFLKKDMVNSYSPSTDSASSSPVSSTTSMN AESFLNALWGLSPKVMVVTEQDSNHNGSTLMERLLEALYSYAALFDCLESTVSRTSLERIKVEKMLFGEEIKNIIACEGA ERKERHEKLDKWLQRLDVSGFSNTPLSYYGMLQARRFLQSYGCEGYRMREENGSVVMCWQDRSLFSTTAWRPRK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 8 | 473 | 466 | 4.5E-227 | – | |
| PANTHER | 8 | 473 | 466 | 4.5E-227 | ||
| ProSiteProfiles | 40 | 471 | 432 | 82.078 | ||
| Pfam | 49 | 471 | 423 | 1.6E-137 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Response to gibberellin | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gibberellin stimulus. |
Expression pattern of LotjaGi2g1v0443200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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