Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0443900 |
| Transcript ID | LotjaGi2g1v0443900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Porphobilinogen deaminase; TAIR: AT5G08280.1 hydroxymethylbilane synthase; Swiss-Prot: sp|Q43082|HEM3_PEA Porphobilinogen deaminase, chloroplastic; TrEMBL-Plants: tr|A0A151SCZ0|A0A151SCZ0_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0443900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:93947002..93950517) extracted from Lotus japonicus Gifu genome v1.2.
GTATTACAGAAAAAGAAAAAAATAATATTTTAATGTGTAGAAAGTTTATCTTGGATATCCAATCTAATCCATCATCATCT CCGTATTCTCATCATCACAGTGCAGAGGTTTCGTCTCAAACAACGTTCTGGTTCTGTTGTGCTCATACACACTCAACTCA CTCACTGTAACACTGTTCTCTGTTCTTCTCTTTGAAAACGAGTATGAATTCCCTTTCTCCAATCACACTCCATGCCCCTT TCTCCACAAGATATGGCCGCGTTTCCGTCAAGGCCTCCATTGCTGTTGAGCAACCCACTAAGCTTGCTCTCATCAAAATT GGTACCAGAGGAAGGTACTCTTTCTTCTCCCATTTCTGCTTCCGGGTCTTCTCATTATCGCCACATACTTCAATTATTTT CTCTGTTTGATGTGAAAACAGCTCTGCAATGCCTTGGATCTTTGATGACCCTTTGATTGAGCCCTGTAATCAAGCTTGTC AAAAAGCTTAATTTGTATTTGCAATGCGTTGGTTTATCTGTTTTTGGAAGAAATGCTTTCCTGGGGTTTATAGATTTTGT TTGTGCTTATAGTATCTTCAAGAAATTGAACAATGCTTTTCTAGGGTTTATAGATATTGTGCTACAGTCATCTTGATAAG GTAGATTTATAACTTATAAGTAATACCCATTTAAGTTTACAGATAAGTTTAATTAGTATAGCAATCTGTCTTTTCTTGTG CTATGAAATTCTGTTATTTAACTGTTACCCAATTGTTTCTAGCTAGTGGATTATGCATACTTACATCTTTGGTGTGACAA ATATTCTCAGATTCTTAATTCCATTTTTGGTTGTTTATATACATTTTTTGTGTGTAGAGCAGTCCACTAGCTCTAGCTCA GGCTTATGAGACCAGAGACAAACTCATTGCATCACACTCAGAGCTAGCGGAAGAAGGGGCTATTCAGATTGTGATAATTA AAACAACAGGTGACAAAATACTCTCGCAACCGCTTGCAGATATTGGCGGGAAGGGCTTGTTCACCAAAGAAATAGATGAG GCGCTCTTAAACGGTGAAATTGACATTGCTGTCCATTCCATGAAGGACGTTCCTACTTACTTACCTGATAAAACAATTCT ACCGTGCAACCTTCCGCGTGAGGATGTTAGAGATGCATTTATATCCTTGAGTGCAGCTTCGCTAGCTGATCTTCCCGCTG GAAGTGTCATTGGTACTGCTTCACTAAGACGGAAGTCTCAGATACTCCACAGATATCCATCTCTAAATGTAAGTTCATGT TCTTTTATACTCATTATTACCCTAAGTTCTAACAATGTGAGACTACAAAATAATTGTTACTTGTTTTACTAAAATCAGCT CCAGCAGGTGACTTAAATGGATGTCAGCTGTATAAGATTGAAATTTCCTATACAGATTGCAGGATGTTGTCCAAGTTGTC ACAATATTCCTTCCAATGTTAAAAGTTAATCATAAGTAATTTGAAGTTTCAACCTATGTTCTCAAAATAATACAGAATGT CAAGTTGACAGATAGACACTCACATAAGCGCTTTGCATGCTGAAACCTCATAGATATGTCGGGCTTTTTAAATGCTTCTG AAAGCATGTCATAGAGATTGGTATTGCTACATATCATATTGGCACCAGTTGTGATCAAAGCATTTCATGCAATCATTTGG ATGGTTGAGTTAAGCAGACCATAGTTAATATGCTTGTTTTGTCGCCTTATTGACATGGATTAATTATTATAGTTGCCACT GTGGAGTAATAGCTCATGTCATCCTTGTGACTCTTGCTCTAGGATTATGGGCATTGCATGCGTCTTCCAAAAATTGTTGC CTAACTTGCCTTCTTAGAAAGCTATATGGTCTCTTGCTATCTTTGATGGATTTTGTTTTGTAAGAATTTTGTTATCTTTC TTGAAGCATTTCCTGTTGTGCTGCTTCTGTTTAATTGTTCTTGTGCTACTTTATTTGTGAAATTACAGCGTTCCGAACCA CTGATAAATTGTTCTTGATTTTATTTCTCAGGTGCAAGATAATTTCCGGGGCAATGTCCAAACCAGGTTGAAAAAACTCA ATGAGGGAGTTGTCAAAGCTACACTATTGGCATTAGCCGGACTCAAACGGTTAAATATGACAGAAAATGTTACTTCAACC CTCTCGATTGAAGAAATGCTTCCAGCTGTGGCCCAAGGCGCGATTGGAATAGCATGTAGAAGTGATGATGATAAAATGGT ATGTGTATAGTGCACATCTTATCCAATATGCTGGTGGCCTGATAAAATCGTAGTTTCTTTACTCATTTTAGTCTAGAATC TCAATATTCATAACTTTGTGGTTGACTGGTTTGTGCAGGCAGAATACATTGCATCATTGAACCATGAAGAAACAAGGCTG GCTGTGGTATGTGAAAGGGCCTTTCTTCTGACTTTGGATGGGTCTTGCCGCACCCCTATTGCAGGCTATGCTTCCAGAAA CGAAGACGGAAATTGCTTATTTAGAGGATTGGTTGCTTCCCCGGATGGAACTCGTGGTATGAGCACATGTTATAGATTTA TATAATTTGATTTTGTCAGAATTTCTAACCCCTCACAAGGAACTATTCTCTAAGCTTTCTTCTAATCTCCTCTGTGCAGT GCTGGAGACATCTAGGGTTGGTCCATATGCTGTTGAAGATATGATTGAGATGGGTAAGGATGCTGGCAAGGAGCTTCTTT CTCGAGCTGGACCTAACTTTTTCAGTAGTTAGCAACAGTTTAAAATGCTAGTGTTTATGGAAGTTTCTTGGTCTGTTTTT AGGTCATTGTCTCCCACGTTAATCCCTCTCCCAAGTTAATCCAATTTTTTTACCTGTTGTAACTTTGAAGTAGATTAATG TTGAGATGAGATTGAGAAAGTGGACCTCTCATTAGGGTCAAAGTGTTGTATTTTAGAGATTGGAATGCCATTTTTTTTTG TAACTTGTATAATTTCCACTATAGTCAACTCTGAAGAGTTCATGCTAGTTTCATTGCCTCATTACTATTGCACTGGAAAC ATACTTTTGGATATGGTTGAAACTTGAATTGAACTCATACTATGACAAAATGTACAAGAAATGAAGAAATGAATGAATTT CCATCAGTATCTTGCAAAAAGTTAGCAACAAAGAACCTCGATGACCACTACCATAATATACAATCGCTTCAAAACAGTTA ATCATCCATGGTACAAATATGGGCACTTGCCATTAGAAACTCCTGAGTTTTATTTTCATTTATCATTTTATATTGGATTC ACTTTTAGTAGACAAGTTACACAGCAGAAAGTATGCCAAAGAAGTAGAGTTTAATATTCGAGAACACTAAAAATTGCTCT TATTGGTTGCTTCGGTTATCCTGACTATTCTTCTTGACACTACGGAAAACATCTTGCATTAACCTCTCATGCTCTCTTAG CATGTCATCAATGTTGCCACCTGGAGGTACTAATGGTCCAGAACAATGGATCCTATTTTTCTTGGGCACATACCCC
CDS sequence (LotjaGi2g1v0443900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATTCCCTTTCTCCAATCACACTCCATGCCCCTTTCTCCACAAGATATGGCCGCGTTTCCGTCAAGGCCTCCATTGC TGTTGAGCAACCCACTAAGCTTGCTCTCATCAAAATTGGTACCAGAGGAAGTCCACTAGCTCTAGCTCAGGCTTATGAGA CCAGAGACAAACTCATTGCATCACACTCAGAGCTAGCGGAAGAAGGGGCTATTCAGATTGTGATAATTAAAACAACAGGT GACAAAATACTCTCGCAACCGCTTGCAGATATTGGCGGGAAGGGCTTGTTCACCAAAGAAATAGATGAGGCGCTCTTAAA CGGTGAAATTGACATTGCTGTCCATTCCATGAAGGACGTTCCTACTTACTTACCTGATAAAACAATTCTACCGTGCAACC TTCCGCGTGAGGATGTTAGAGATGCATTTATATCCTTGAGTGCAGCTTCGCTAGCTGATCTTCCCGCTGGAAGTGTCATT GGTACTGCTTCACTAAGACGGAAGTCTCAGATACTCCACAGATATCCATCTCTAAATGTGCAAGATAATTTCCGGGGCAA TGTCCAAACCAGGTTGAAAAAACTCAATGAGGGAGTTGTCAAAGCTACACTATTGGCATTAGCCGGACTCAAACGGTTAA ATATGACAGAAAATGTTACTTCAACCCTCTCGATTGAAGAAATGCTTCCAGCTGTGGCCCAAGGCGCGATTGGAATAGCA TGTAGAAGTGATGATGATAAAATGGCAGAATACATTGCATCATTGAACCATGAAGAAACAAGGCTGGCTGTGGTATGTGA AAGGGCCTTTCTTCTGACTTTGGATGGGTCTTGCCGCACCCCTATTGCAGGCTATGCTTCCAGAAACGAAGACGGAAATT GCTTATTTAGAGGATTGGTTGCTTCCCCGGATGGAACTCGTGTGCTGGAGACATCTAGGGTTGGTCCATATGCTGTTGAA GATATGATTGAGATGGGTAAGGATGCTGGCAAGGAGCTTCTTTCTCGAGCTGGACCTAACTTTTTCAGTAGTTAG
Protein sequence (LotjaGi2g1v0443900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNSLSPITLHAPFSTRYGRVSVKASIAVEQPTKLALIKIGTRGSPLALAQAYETRDKLIASHSELAEEGAIQIVIIKTTG DKILSQPLADIGGKGLFTKEIDEALLNGEIDIAVHSMKDVPTYLPDKTILPCNLPREDVRDAFISLSAASLADLPAGSVI GTASLRRKSQILHRYPSLNVQDNFRGNVQTRLKKLNEGVVKATLLALAGLKRLNMTENVTSTLSIEEMLPAVAQGAIGIA CRSDDDKMAEYIASLNHEETRLAVVCERAFLLTLDGSCRTPIAGYASRNEDGNCLFRGLVASPDGTRVLETSRVGPYAVE DMIEMGKDAGKELLSRAGPNFFSS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 15 | 344 | 330 | 9.2E-117 | ||
| PANTHER | 34 | 343 | 310 | 1.3E-132 | ||
| PANTHER | 34 | 343 | 310 | 1.3E-132 | – | |
| CDD | 36 | 315 | 280 | 0.0 | – | |
| Hamap | 36 | 336 | 301 | 34.022 | ||
| Gene3D | 37 | 246 | 210 | 5.7E-81 | – | |
| Pfam | 37 | 249 | 213 | 1.4E-76 | ||
| SUPERFAMILY | 37 | 254 | 218 | 1.41E-73 | – | |
| TIGRFAM | 37 | 335 | 299 | 1.7E-100 | ||
| PRINTS | 80 | 100 | 21 | 5.8E-43 | ||
| PRINTS | 111 | 130 | 20 | 5.8E-43 | ||
| Gene3D | 138 | 238 | 101 | 5.7E-81 | – | |
| PRINTS | 159 | 176 | 18 | 5.8E-43 | ||
| PRINTS | 179 | 196 | 18 | 5.8E-43 | ||
| SUPERFAMILY | 256 | 343 | 88 | 6.67E-21 | ||
| Gene3D | 257 | 344 | 88 | 1.1E-33 | ||
| Pfam | 262 | 334 | 73 | 8.2E-15 | ||
| PRINTS | 266 | 283 | 18 | 5.8E-43 | ||
| ProSitePatterns | 267 | 283 | 17 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydroxymethylbilane synthase activity | Catalysis of the reaction: H(2)O + 4 porphobilinogen = hydroxymethylbilane + 4 NH(4)(+). | ||
| Biological process | Peptidyl-pyrromethane cofactor linkage | The covalent binding of a pyrromethane (dipyrrin) cofactor to protein via the sulfur atom of cysteine forming dipyrrolylmethanemethyl-L-cysteine. | ||
| Biological process | Tetrapyrrole biosynthetic process | The chemical reactions and pathways leading to the formation of tetrapyrroles, natural pigments containing four pyrrole rings joined by one-carbon units linking position 2 of one pyrrole ring to position 5 of the next. |
Expression pattern of LotjaGi2g1v0443900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…