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LotjaGi2g1v0446000.1

Overview

Field Value
Gene ID LotjaGi2g1v0446000
Transcript ID LotjaGi2g1v0446000.1
Lotus japonicus genome version Gifu v1.2
Description Cytochrome c; TAIR: AT4G10040.1 cytochrome c-2; Swiss-Prot: sp|P00052|CYC_VIGRR Cytochrome c; TrEMBL-Plants: tr|I3SL85|I3SL85_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0446000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:94091755..94095576) extracted from Lotus japonicus Gifu genome v1.2.

GACCAAACGGGAATTGGAGCGCCACAAACGGTCCACGTCAACCCAAAAAAAAAAAGTTAGGGCTGGGTTTGGTGCACCGT GGCGAACGCGTTCCAACCTCCCTATATATAGCTTCTAAACAGTCCAATTCGTGCCACATTTCTACGCACGCGAACCTTCC CTTCCCTTCCCTTCCATTATTCTCTCTCGCTTTCTCGAAACCCCTGAAATCAGCGCCGTTCAGCAATGGCGTCGTTCGAT GAGGCTCCTCCCGGCAACTCCAAGAGCGGTGAGAAGATCTTCAAGTTGAAGTGCGCTCAGTGCCACACCGTTGAGAAAGG CGCCGGTCACAAACAAGGTCGGTTCTCGTTTTCTCTATTTCTCGCTTCGCTAAATGATTGAATTATGTACCCTAGCATGA TTGATCTTGAGTTTTCGGATTGAATTTTGTTTGGATCTCTATCTGATTTGTTGAATTTGAGATTATAAGGCTTGGATCTG GAAATCTAGCGCTAGTTTTTGTTTGTTCATTCTTCTGCGTTGTTTGATTGATTTAATTGTTATTATCTTCTTCTGAATTG GTGAATTTGATCTCCCTAAAAATTATGCAATTGATTGTCGGTTTGATTCTGTCGATATTGTGAATGTCATGATTGTGATT TGACTGTGGAGAAGACTGCAAAATCTTATTGCGCTAAGATCAATTGAAAAGTAACGTTTACAGTAGGATAATTCGGCTAG ATTCTCTATATTTATTCAGTTCTACCTAAAACCTAAGATCAGAAGCTGTGGATTGTAGAATTTAGTGGATTTGTACCTGG ATTGTATCTATAATTTAGTTGATTTGGTTCATGGATTGGAACTCTATACCTTAAGCATGCAAATTAACCTTGCATTTGTG AAGTTGTGTGGCCAATGTTGATATATCTTTAGCAGCATAATTTTAAACGTGTTAAAGGTTGATTTGCATGTCTAAGGTAT AAGGTTTCTACACAAGAATTTCTCTGTTCCATGTTGTACTTTACTAATAATATTTGGCTGTCTGTCTAAAGCCTGTAGTT TGAACGTGATTCACTCGTAATTTTTCATTTTATACCGAAAACTGAGAGAGAATGAGAAGGTATTTGCAAAGGGCCAAGGA CAGTAATATGAATGCTTTAATTTCCAATTTCCAGCACTCCTGAATTATGCTTATTATAATTATTTGGTCAGTTCAATAAT TATAACTATGCTTGAATATTCATTGAATACCTTCAGCTGAAAAGCATTAGTTCTTGTAATGTTATCATATTAGCTGTATT TTTCCAGCAATACTTTGATTATTTGGTTCATAGTTTTGTTGAGGACTTGAGGTCTTAAAGTTCCTTTATAATAATGTCTT TTGTTATAATGTCTGTGTTGATGTTTGAAAGTTCTGTCTACATGTCGTATTCATTAGATCAAAACTCAAACCAAATTTTG GCAAAGCATATGTTGATATTGAATGGTTGGTTAAACTGGTTCTCTAGCCTGATCAATCCTTCATTTACATGATTGGTGTT CTTGAGTTGAGCTTTATTTTGAAGAACTGTTTATGTTCCTTATCCTTTTATCGAATTCTATACCGCAGTCTATTTTGTAT GATGGTTTTGTTCTTCTGAACTTGTTTATGATATAGTTTGTATTACTAGTGTTCAGAACTTGAGATTCTTTCTTATTTTT TGTCCTAAGTTTGTAGAATAAACAAATCCTACTTGAAACTAATTTATAGTACTCCGCTCCCTTGTTCCCTTAATTGCTTT GCCCCTTTCACTGTGATGGTACGTATCCGAACATAGTCTATTATAGTAATTGTTTATAGTTTCTTAGAGCAGTTGTATAA TTATTTTTCTGCTGCCTGTGTCCTTGAATAATGTTGTTATCTATTCTAAAGACTGAAATATTTGACAATCTCAGGACCCA ATCTGAACGGTTTGTTTGGAAGGCAGTCAGGAACTACTGCTGGATATTCCTACTCTGCAGCTAACAAGAACATGGCTGTG AATTGGGAGGAGAAGACTTTGTACGATTACTTGCTTAACCCTAAAAAGGTACAATATAAACAAGTATTTCTATACTGAAT GGCAATAAATCACTGAATTGTCCAATTATGAATATACTTCACCGACCTTCACTCCAAATAATAGTCATGCACATACACTT TATATTTATTCTCATTATGGGATTTAATTCATCCACTGTTTCATATTATATTTTGATAAGCTAATGTTAAAAGTTGACAT AGACATTTGTTTCCACCACAATATGTCGCTGATCTGCACGTTGTGTTATGCCCTTTTGCAGTATATTCCAGGGACAAAGA TGGTATTTCCTGGTCTTAAGAAGCCCCAAGAACGTGCTGATCTTATTGCGTACCTGAAAGAAGCCACAGCACAGTGATTT AATATTTCATACATTCAATTTTGCAGTGTGCTTTTAAAGTTCTGAAGATTTAATTTTCAGACATTTAATCATGCCGTACA GTAAGTTCTGTATCTTTGGCAAATAAAATAGGCTACATTGGTCTGCAATGCTATTTTGTTAATTTTGCATTGCTTCTCAA AACTCAGCTGAATATTGGCTGGAGTATCGCTCAATCAAATTATCTGTTGAAATCTGAACATTCTTATCAATTTGGTTAAT TGGGAACACAATTTGGCGCAGTGCTACTCTTGCTACGTTTTTTTTTCCGCTTAGTTGTCTAGTGTTGGTTATCTTTTTTT TTTTTGAATAACTAGTGTTGGTTATGTAAGTATAAATAAAATCTGAAAAATATCAAAGATTTCCTTTATATTAAAATTGA TGTTTTAGGAAAGTATTAAGTGAAAAATAAGGAAGGCTCATGAGACATGATAGAAGTTCATCTAAGGATCTCCTCTGCCC GAAGAATTCACATTAGCTATAGAAGTGTGTAAATGCACTCTTTCATGTTCAACCCAGAGACTTGAGCCTTTAATGTAAGG CCTTTTCACATCTTGGTCGCTTGTGAAAAACATTCTGATTGCCTCCTTGAGGTTTGGCTGATTTTCCACCTTAGATACGT GTTTGAATATTGAATTTTTGGAGCCTTTGTATTTCGTAAGTAGTTCACTTGTTCAAAGTTCTCACACTTCAATTAACATA CTCCTCTCACAAAAATAGTACCCCAGCGACTGTGTTGGTCAGATACTAGTTTCACTGCTTCCATTTGTTTGGTTAATGCA ACTAGTTGTTGGGACTTGGGAGATGCTCTTGTTGGAGGTAACACGGTGTTAAGTTCAATCACTCTCCCTTTCCTGGCGTG CTCCATTTGCTAGACATTTGGTACTCATTCATGATCATTGCCATATAATCCAGATAAATGCTTCTTCTCGGGTTTTGGTG TTCAAATAAAACTCAATAGCTAGACACCTTTTGACAAGCAAGTCCAACAGAAATTCTTATCAAATTCATTTTTTTTCGAC ACTGTTTACCGCACCTCCACACCACCAACTCTCTGCCCCACAACTCTTCCACTCCCCCTTTCCCTTTATTTCATCACCCT CACACCCATTCCATTACACAAATGTTTTAGGTATGAAATTAACTAATGAAATCTGTCATTTGCATCTATGCTTTTTTTAG TGGAAATTGCACGGAAAGGTGGGGTGCTCACAGGGTAGATTGATTCTGATTTGATCAACTTGGCCGACAAAACTCGATCA GACCAAAAAGTTAGATTGGATTGAATTCTAGACAAGGAAATTCTATGAGTTAAGTTCAGATTCTAATTTCGAGAAAAAAG AAATCTGAATCGATCTGTGAATCCGAACAGATGAGGTCGTGAAAAGGAACGTGGAAGCAGGT
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0446000.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCGTCGTTCGATGAGGCTCCTCCCGGCAACTCCAAGAGCGGTGAGAAGATCTTCAAGTTGAAGTGCGCTCAGTGCCA CACCGTTGAGAAAGGCGCCGGTCACAAACAAGGACCCAATCTGAACGGTTTGTTTGGAAGGCAGTCAGGAACTACTGCTG GATATTCCTACTCTGCAGCTAACAAGAACATGGCTGTGAATTGGGAGGAGAAGACTTTGTACGATTACTTGCTTAACCCT AAAAAGTATATTCCAGGGACAAAGATGGTATTTCCTGGTCTTAAGAAGCCCCAAGAACGTGCTGATCTTATTGCGTACCT GAAAGAAGCCACAGCACAGTGA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0446000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MASFDEAPPGNSKSGEKIFKLKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTAGYSYSAANKNMAVNWEEKTLYDYLLNP KKYIPGTKMVFPGLKKPQERADLIAYLKEATAQ
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11961:SF33
1 113 113 2.5E-74 –
PANTHER
PTHR11961
1 113 113 2.5E-74
IPR002327
Gene3D
G3DSA:1.10.760.10
2 110 109 3.5E-41
IPR036909
SUPERFAMILY
SSF46626
9 109 101 1.51E-33
IPR036909
ProSiteProfiles
PS51007
10 111 102 15.638
IPR009056
Pfam
PF00034
13 109 97 6.6E-13
IPR009056
PRINTS
PR00604
22 29 8 3.0E-36
IPR002327
PRINTS
PR00604
35 50 16 3.0E-36
IPR002327
PRINTS
PR00604
51 61 11 3.0E-36
IPR002327
PRINTS
PR00604
65 81 17 3.0E-36
IPR002327
PRINTS
PR00604
84 94 11 3.0E-36
IPR002327
PRINTS
PR00604
101 109 9 3.0E-36
IPR002327

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0009055
Molecular function Electron transfer activity Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
Subterm of
GO:0020037
Molecular function Heme binding Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0446000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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