Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0446400 |
| Transcript ID | LotjaGi2g1v0446400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein interaction domain protein; TAIR: AT3G23880.1 F-box and associated interaction domains-containing protein; Swiss-Prot: sp|Q9LIR8|FBK67_ARATH F-box/kelch-repeat protein At3g23880; TrEMBL-Plants: tr|A0A1J7H7J9|A0A1J7H7J9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0446400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:94119356..94121393) extracted from Lotus japonicus Gifu genome v1.2.
CGGATTTTGATCTTCCACTGCATGCATTTCAGAAGCTGCCGCTCTGAACCAAGTGGTATTGAACAGAGGAACCTTAACAG CTTGGAATAGAAGATGGGGTTAGAAATTCTGAATATACTATCAAGCTTAATATACTATCTCTGCAACTTGGGAAGCCCAC GCCCACCAAAACAACTTCCTCCGTTGCTCCATGTAGAACTTGTCATGGAAATATTGTCATGGCTTCCGGTGAAATCTCTA GTGCGATTCAGGTCTGTGTCCAAATCATGGAACTCTCTCATCTCTGATTCTCACTTTGTAAAACTGCACCTTCACCGTTC AACTTCTAGAAGTAATGCAGATTTTGCCCATGCACGCTTCCTGACAACCGTACATGTTTCTAGTCGAGCATATATCTCAT CTCGCTCTGTAACTTCACTGTTGGAAAGTCATCATTCTGCAGAAAGACCATATTGTGTTTCCGAGTACAATGTCGTCGGA GCATGCAACGGGTTGGTTTGTTTGAGCTATGGATACGAAAACAGAAATCGTTTCTTCCGACGGGTCTGTTTCTGGAACCC AGCTACGAGATCAATGTCTCATGATTCTCCACGTTTACAAACTCGTTCTCGACGTTCACGAAGCTATAATTATTTTGGGT TTGGTTATGATTGTTCAAGTGACACCTACAAGGTGGTGAATGTGCGAACCGAGGAGACAATGGCGAACCTTTACAACAAG GGTGATAATCGTTGGTGGAGAATTCAAGTCCCCCCTCTTCCCCGTTTGTATTTGATAGGACCTGCACATTATGTGAGTAA CGCTGTTAATTGGTTAGCAATTCTTCCCATAGATTATATATATGGGAAGAATGGTCCCGAATTAATGGATATTGATGCGT ACAAAATTGTTTCATTTGATTTGGGGAAACAAAGTAATGCACAATTGTCACTGCCTTATTGTCCTCGACGTAGAGACGAA GTCCCCGGTTTTCTGCCAGTTATTGGGATTTTGAGAGGTTACCTATGTATTTCTGATAACAGCAGTAAAAGAGGTAATGT TGTGGTTTGGCAAATGAAGGAGTTTGGAGTACACCAATCTTGGACTCAGTTGTTTAGCATTAGTGCCTCTGAAAAAATTA GTTGGTGGCCCTGTTTTGCAATGTTCATGTCTGATAGTGGAGATGCCTTGTTGTTGTCGGTTTCTACTCTATCTCAAGGG GTTCTCTATACCCTAAGAGATAATAAATTACAAGGCACCAAAATTGATAATGAGATCGATGATTGCTATGCTGAAAATTA CATTGAAAGTTTGGTTTCACCTTGGTGAAAGTAAGTATGTTTGACGCATTTTATTTATTACCATTATACTTTATTCTTAA TTCATGTATCCTTCTTAAATCTTCAATGATAGAGAACTATTGTTGAATATGTGAATGCTTTTAGGTGTGCATTAGGACTA ATTTGTTGGATTTTTAAGGTTTAAGGATTGAATCAATTTGTTCTTGCTTTATATTTTACTAGTGGAATTATCTGTGCACT TGAACAGGTTTTTGTGTATAGTAGAATTGATCGTTATGCAGATGTGAAACTCCAGATATTCTATATGTAGTTGAGGGATG CTTTTGGAAGGATACTTATGAGATATACAGGATTTGTTTCTCTGATTTCTTGTCATGTCAAGGCGTAGAATGTCAACAAG GGTCATGTGAGGAGTTAATACGATGTGTTGCAGAACCATTGCCTTCATTTTGTTGTCAAAGAATCAATTAAAAGAACAGG AGGGTGGAAAGTGCTTATCTAGCTATTTTTTTGTACTGTTGATCAATTTAAGGTTGTTGATACTTTGTTTAGAAGTAATT CTCCCTTTGCCCAATTGGATATCCTTTAATTGGCCAAGTGAGGAAGAAGCTTTGACTTATTTCTTTATTGTTGATCCTCT AGGATAGGTAGAGAATTTTGAGGTTGATTATGGCATGTTTGAGAATGGAGGTAGACTTCCAAGGTGATTCACAACAATAA TTATTGTGTTACACATTCACTTCCAAAGTTTCTTTCGC
CDS sequence (LotjaGi2g1v0446400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGTTAGAAATTCTGAATATACTATCAAGCTTAATATACTATCTCTGCAACTTGGGAAGCCCACGCCCACCAAAACA ACTTCCTCCGTTGCTCCATGTAGAACTTGTCATGGAAATATTGTCATGGCTTCCGGTGAAATCTCTAGTGCGATTCAGGT CTGTGTCCAAATCATGGAACTCTCTCATCTCTGATTCTCACTTTGTAAAACTGCACCTTCACCGTTCAACTTCTAGAAGT AATGCAGATTTTGCCCATGCACGCTTCCTGACAACCGTACATGTTTCTAGTCGAGCATATATCTCATCTCGCTCTGTAAC TTCACTGTTGGAAAGTCATCATTCTGCAGAAAGACCATATTGTGTTTCCGAGTACAATGTCGTCGGAGCATGCAACGGGT TGGTTTGTTTGAGCTATGGATACGAAAACAGAAATCGTTTCTTCCGACGGGTCTGTTTCTGGAACCCAGCTACGAGATCA ATGTCTCATGATTCTCCACGTTTACAAACTCGTTCTCGACGTTCACGAAGCTATAATTATTTTGGGTTTGGTTATGATTG TTCAAGTGACACCTACAAGGTGGTGAATGTGCGAACCGAGGAGACAATGGCGAACCTTTACAACAAGGGTGATAATCGTT GGTGGAGAATTCAAGTCCCCCCTCTTCCCCGTTTGTATTTGATAGGACCTGCACATTATGTGAGTAACGCTGTTAATTGG TTAGCAATTCTTCCCATAGATTATATATATGGGAAGAATGGTCCCGAATTAATGGATATTGATGCGTACAAAATTGTTTC ATTTGATTTGGGGAAACAAAGTAATGCACAATTGTCACTGCCTTATTGTCCTCGACGTAGAGACGAAGTCCCCGGTTTTC TGCCAGTTATTGGGATTTTGAGAGGTTACCTATGTATTTCTGATAACAGCAGTAAAAGAGGTAATGTTGTGGTTTGGCAA ATGAAGGAGTTTGGAGTACACCAATCTTGGACTCAGTTGTTTAGCATTAGTGCCTCTGAAAAAATTAGTTGGTGGCCCTG TTTTGCAATGTTCATGTCTGATAGTGGAGATGCCTTGTTGTTGTCGGTTTCTACTCTATCTCAAGGGGTTCTCTATACCC TAAGAGATAATAAATTACAAGGCACCAAAATTGATAATGAGATCGATGATTGCTATGCTGAAAATTACATTGAAAGTTTG GTTTCACCTTGGTGA
Protein sequence (LotjaGi2g1v0446400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGLEILNILSSLIYYLCNLGSPRPPKQLPPLLHVELVMEILSWLPVKSLVRFRSVSKSWNSLISDSHFVKLHLHRSTSRS NADFAHARFLTTVHVSSRAYISSRSVTSLLESHHSAERPYCVSEYNVVGACNGLVCLSYGYENRNRFFRRVCFWNPATRS MSHDSPRLQTRSRRSRSYNYFGFGYDCSSDTYKVVNVRTEETMANLYNKGDNRWWRIQVPPLPRLYLIGPAHYVSNAVNW LAILPIDYIYGKNGPELMDIDAYKIVSFDLGKQSNAQLSLPYCPRRRDEVPGFLPVIGILRGYLCISDNSSKRGNVVVWQ MKEFGVHQSWTQLFSISASEKISWWPCFAMFMSDSGDALLLSVSTLSQGVLYTLRDNKLQGTKIDNEIDDCYAENYIESL VSPW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 20 | 119 | 100 | 3.9E-10 | – | |
| SUPERFAMILY | 24 | 129 | 106 | 5.76E-14 | ||
| SMART | 32 | 72 | 41 | 6.1E-8 | ||
| Pfam | 34 | 70 | 37 | 2.1E-9 | ||
| PANTHER | 37 | 355 | 319 | 4.2E-43 | – | |
| PANTHER | 37 | 355 | 319 | 4.2E-43 | – | |
| TIGRFAM | 130 | 372 | 243 | 3.8E-13 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0446400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…