Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi2g1v0448800 |
Transcript ID | LotjaGi2g1v0448800.1 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | ADP-ribosylation factor; TAIR: AT5G17060.1 ADP-ribosylation factor B1B; Swiss-Prot: sp|P91924|ARF_DUGJA ADP-ribosylation factor; TrEMBL-Plants: tr|I3T232|I3T232_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0448800 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:94247686..94251389) extracted from Lotus japonicus Gifu genome v1.2.
ATAAAAAATATTTAAATAATATTTTTGGTTGTTTGTTCGAAAAAAGAGAGAAAGTTCTTAGAAAGAAGGAAGAAAGCAAG AGGCAACGCTAACGCTACCCAGTGGGTGTCGTTTGTTGAAATTCAAAGTTGAAAGTTGAAAGTTGAAAGTTGAAAGTTGA TACTCTCTCTCATTCTCTGCAGAAATTCACAGGCATGGGTCAAGCTTTTCGGAAGCTCTTCGATACCTTCTTCGGCACCT CTGAGATGCGGGTACGGCAACCCTTTCTTCTTCTTCTTCTTCTTCTTCTTCGATTATCTAGCTTCTTTTCTGTAAAAACA ACCTCGTTTGTCTAATTTGCTGCAAATTTAAATTTATTGTTTCTTTGATCTGGTTGGCATAGGTTGTGATGCTTGGTCTT GATGCTGCTGGAAAGACAACTATACTGTACAAACTCCACATTGGAGAAGTTTTATCAACTGTTCCTACTATTGGTGGGTC TTATTTTCTTCTATCAAAGAAATTCATGCTTAATTTCAACTTCTATCGGGGTGTGTTTGGATAAACAGCTTAATTAACCA CTTATTATCGCGTATTCATAAGCTAATTTGAGAAACTTATTGAAATAAGCTCATAATAGGTTATAAGTAGGTATAAGCTT TTTACATATGCGCTCTCAAATGGGGCCTAAGTATGTATGAGGATATGCTGAGCTGAGTTGAGTTGCATAGTTGTTTCCTA GATTGTTTGAAGACATGGAGGGATTTTTTTTTATCATGAAAGTAGTTTTTCTGCAGCTGAATTTCTTGTGGTAAAAGAGA ATTTCCTCTCTTCGTTGGTAGGGATAATATCTATTACTTTCAGCAGTGAGTAGAATGGAATTAAATCAGAGCTAACATAT ATGCAATTGTCTTTGAAGTTTCAAGTCCAACAAAAAGTTAGAATTGCACAAATTTATCAACAATTATGTAGTTCTTTCTC AAAATCAGTTTCTTCCTTCAATTGCTGGAATCACGTTTTCACAAAAGCTTAAGGAATTTGATTTTTGTTCCTGAGATGGG ATTCTAGCGTCTTCAAATGCTCCGCTAGACTTTACTAAGTCCTTCTCCATTCTCTTGAATGTGGTTGTTGGTTATAGTAA TTCCCATTCTGCAAGAATAGAGGTTTGGCAGAACAAACATTGATTCTATAAAAATGTTTGATTCAGACTCAAGATGTAAG TAAGAGTTGAGCCATATCTGGCAGTTATTTTTAACAAATATTCTTCTAAAGCTTTTCACAAGATCACATTTCAGTTCTTT TATCCAGCTTGAGGGTACTGTTACCTTGTTTGGTATTTCTGTTAATAAATTATGAAAAGCACTGTTTATTGTCCAGATTT CCCATGTCAAGGGAGATAAATTTCCCTCTTTTATTTTATTGAACTATTTTGATCCTTCTTTTCATTAAGGTTTTCTTTGA CAGCCAAAATAATCAGGTCATGTCAATACATGCAAGCCCTGGTGTTTTTGGCTGTCAAATGGGTCTGTAGTTGTTTTTAT AGGCTTATAAGTTGTATTGCCTTGCAGGCTTCAATGTGGAGAAAGTTCAGTATAAGAATGTTATTTTTACTGTCTGGGAT GTTGGAGGACAAGAGAAATTAAGGCCACTCTGGAGGCACTATTTTCAAAATACAGATGGTCTGGTAAGAATATATCTCCT TGCGCCTTTTTCTTTTCCCAGTGAAAAGGAAGGTTGTGCTCTTGTAGTTCTTTTGTGAGACTTTCCTTCTTTTACCATCT TTAATTTGTCCAATGAGTCTGGAAAGACAAGTAAATGTGCATAGGCTAGCAAAATTGATATTTATAAACAGGTGTGAACT TTTGCAGATTTATGTTGTTGATAGCCTGGACCGTGAGAGAATTGGTCAAGCAAAGCAAGAATTCCAGGTGTTTTAATCAA ATTTTAATATCATATTATGTGCACATATATCATATATGTCCATTTTGTGTGTGTGTATTATTACAAACTAACTTTGAATT GATTCATGGATGCAGGCAATCATAAATGATCCGTTTATGCTAAATAGTGTCATATTGGTGTTTGCAAACAAACAGGATCT GGTATGTCTTTGTTACTTATTTCTTTATGTACTTTCATCTGCATTTCCTGACATCAAGGCTATCTCCGTGACTGAAGATC TCATAGCCAAAGCTTGTAATCGGTTGAAATAGTGACATTGTTTACTGAATAAGTTAAAAGGAGTGTATAGGATGTAATAA TACATATTAATGTTTGGTTTTTACATCACTCCATTTATCAAAACAATTAAAATCATATCGAATTAGTTAGAAGGCCTCTG AATTGTTAAAACTTTTTATCATATATCCTCTTGTATTAGATAGAAACTTTTCATAGTTGTACCTAGCAACTTAAATTCTC TTTGTCTGTACACCAAGTAGTCCTCCTGGTTGCTTCTTCTTCAAAGGGTCTGACTCTCCAGCCATATTTAGCTTCTCCTT AATCGCACACCAATCTATATTCATATCGAAAGTTTTAGACAAATTCTCTGCCATTCAAATTACCAGCACCTCTTGTTTAT CTCGTATAATTGTGTAAGATTCCTAGATGTCATGAGTTTTATGGAGTCATTTGTGTGGATTTCCCTGTAGTAAATAATGC AATACTATCCCATACATAAAATTACAGGCTTTTGTTTGTGCCAGTTCAGTCATGGAGTATCACACCTAGACAAATTGAAA TGAACACCTGGATTTGTTTTACTTTATGCTCAAGTCTGGTCATAACTCATAATTGTTAATAATTTCTTCTTCTTTTGTAG AGAGGGGCAATGACGCCAATGGAAGTATGCCAAGGACTCGGTCTGTTTGATCTAAAGAACAGAAAATGGCACATACAAGC CACTTGTGCACTTAAGGGTGATGGCCTTTATGAAGGCTTGGACTGGTTGTCTTCAACTCTGAAGGAGAGACAAGCTGCTT GATACTCCTCTTCAATTGGAACATTATCCTTCTAAATGTCAAGGTTTGAACTATAGTTACTGTTATTCACAAGTTACCAT CCCTGCTTATATAATTCCATGACATCATAGGTCTTGTATGATGCAGGTATTTTGGCCCTTGTTATTGACGAACGTGTAGA GTTTGGCTAGATTCATTAAAAAATGCTGTAGAAAAGTACTCAATTTTTTAGGGTTGCATTGATTAGGTTACGTCAAAAGC TGAAGTGTATAGATGCTTTGAGTTGCAGATACTAGATATATGACTCTGGTACACTGTACATAAATTTGAGCGCGACGAAT GAAAACTACTTTGGAGACACGAATTGTGTTGGCATTATGAATTCATTCAATGATTACGTGCTTGACTTACTGTATAGTTG TTGTTGGCTACTGGATTTTGGGTTCATTTTGGCTTGATTTTTCATCCTATCCTTCTCTCCACTAAGATCATGATCCTCTC AATGTATCACTTGGGGTACTTATTATGACTTATGAGGAGAGAGATAGACAAAATGTTTCACTTGACATTGTCATGTGACG AAAAAAATCTTAATTCCATAAAAATATATGATCGTGACCAAACATTTAGCTCAATACCCGTTTGTTACTCTGTATCCACT GTATGCAATTTAGTTAATAAAAAGTTAAAAACATAACATGAATCACTGCATTTTATTTGTTATGATTAAACAAAGAGCAT TGATTCAAAATAGAAAGACCATTT
CDS sequence (LotjaGi2g1v0448800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTCAAGCTTTTCGGAAGCTCTTCGATACCTTCTTCGGCACCTCTGAGATGCGGGTTGTGATGCTTGGTCTTGATGC TGCTGGAAAGACAACTATACTGTACAAACTCCACATTGGAGAAGTTTTATCAACTGTTCCTACTATTGGCTTCAATGTGG AGAAAGTTCAGTATAAGAATGTTATTTTTACTGTCTGGGATGTTGGAGGACAAGAGAAATTAAGGCCACTCTGGAGGCAC TATTTTCAAAATACAGATGGTCTGATTTATGTTGTTGATAGCCTGGACCGTGAGAGAATTGGTCAAGCAAAGCAAGAATT CCAGGCAATCATAAATGATCCGTTTATGCTAAATAGTGTCATATTGGTGTTTGCAAACAAACAGGATCTGAGAGGGGCAA TGACGCCAATGGAAGTATGCCAAGGACTCGGTCTGTTTGATCTAAAGAACAGAAAATGGCACATACAAGCCACTTGTGCA CTTAAGGGTGATGGCCTTTATGAAGGCTTGGACTGGTTGTCTTCAACTCTGAAGGAGAGACAAGCTGCTTGA
Protein sequence (LotjaGi2g1v0448800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGQAFRKLFDTFFGTSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRH YFQNTDGLIYVVDSLDRERIGQAKQEFQAIINDPFMLNSVILVFANKQDLRGAMTPMEVCQGLGLFDLKNRKWHIQATCA LKGDGLYEGLDWLSSTLKERQAA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
SMART | 1 | 181 | 181 | 3.5E-101 | – | |
PANTHER | 1 | 183 | 183 | 1.5E-117 | – | |
PANTHER | 1 | 183 | 183 | 1.5E-117 | – | |
Pfam | 7 | 176 | 170 | 9.9E-70 | ||
SMART | 9 | 177 | 169 | 2.1E-15 | – | |
ProSiteProfiles | 11 | 177 | 167 | 23.028 | – | |
TIGRFAM | 16 | 136 | 121 | 3.6E-22 | ||
SUPERFAMILY | 16 | 180 | 165 | 2.31E-55 | ||
CDD | 18 | 176 | 159 | 2.68462E-106 | – | |
Gene3D | 18 | 177 | 160 | 6.4E-62 | – | |
PRINTS | 19 | 42 | 24 | 6.1E-17 | ||
PRINTS | 47 | 71 | 25 | 6.1E-17 | ||
PRINTS | 74 | 99 | 26 | 6.1E-17 | ||
PRINTS | 119 | 140 | 22 | 6.1E-17 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi2g1v0448800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…