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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0448800 |
| Transcript ID | LotjaGi2g1v0448800.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ADP-ribosylation factor; TAIR: AT5G17060.1 ADP-ribosylation factor B1B; Swiss-Prot: sp|P91924|ARF_DUGJA ADP-ribosylation factor; TrEMBL-Plants: tr|I3T232|I3T232_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0448800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:94248395..94251001) extracted from Lotus japonicus Gifu genome v1.2.
ATGCTTGGTCTTGATGCTGCTGGAAAGACAACTATACTGTACAAACTCCACATTGGAGAAGTTTTATCAACTGTTCCTAC TATTGGTGGGTCTTATTTTCTTCTATCAAAGAAATTCATGCTTAATTTCAACTTCTATCGGGGTGTGTTTGGATAAACAG CTTAATTAACCACTTATTATCGCGTATTCATAAGCTAATTTGAGAAACTTATTGAAATAAGCTCATAATAGGTTATAAGT AGGTATAAGCTTTTTACATATGCGCTCTCAAATGGGGCCTAAGTATGTATGAGGATATGCTGAGCTGAGTTGAGTTGCAT AGTTGTTTCCTAGATTGTTTGAAGACATGGAGGGATTTTTTTTTATCATGAAAGTAGTTTTTCTGCAGCTGAATTTCTTG TGGTAAAAGAGAATTTCCTCTCTTCGTTGGTAGGGATAATATCTATTACTTTCAGCAGTGAGTAGAATGGAATTAAATCA GAGCTAACATATATGCAATTGTCTTTGAAGTTTCAAGTCCAACAAAAAGTTAGAATTGCACAAATTTATCAACAATTATG TAGTTCTTTCTCAAAATCAGTTTCTTCCTTCAATTGCTGGAATCACGTTTTCACAAAAGCTTAAGGAATTTGATTTTTGT TCCTGAGATGGGATTCTAGCGTCTTCAAATGCTCCGCTAGACTTTACTAAGTCCTTCTCCATTCTCTTGAATGTGGTTGT TGGTTATAGTAATTCCCATTCTGCAAGAATAGAGGTTTGGCAGAACAAACATTGATTCTATAAAAATGTTTGATTCAGAC TCAAGATGTAAGTAAGAGTTGAGCCATATCTGGCAGTTATTTTTAACAAATATTCTTCTAAAGCTTTTCACAAGATCACA TTTCAGTTCTTTTATCCAGCTTGAGGGTACTGTTACCTTGTTTGGTATTTCTGTTAATAAATTATGAAAAGCACTGTTTA TTGTCCAGATTTCCCATGTCAAGGGAGATAAATTTCCCTCTTTTATTTTATTGAACTATTTTGATCCTTCTTTTCATTAA GGTTTTCTTTGACAGCCAAAATAATCAGGTCATGTCAATACATGCAAGCCCTGGTGTTTTTGGCTGTCAAATGGGTCTGT AGTTGTTTTTATAGGCTTATAAGTTGTATTGCCTTGCAGGCTTCAATGTGGAGAAAGTTCAGTATAAGAATGTTATTTTT ACTGTCTGGGATGTTGGAGGACAAGAGAAATTAAGGCCACTCTGGAGGCACTATTTTCAAAATACAGATGGTCTGGTAAG AATATATCTCCTTGCGCCTTTTTCTTTTCCCAGTGAAAAGGAAGGTTGTGCTCTTGTAGTTCTTTTGTGAGACTTTCCTT CTTTTACCATCTTTAATTTGTCCAATGAGTCTGGAAAGACAAGTAAATGTGCATAGGCTAGCAAAATTGATATTTATAAA CAGGTGTGAACTTTTGCAGATTTATGTTGTTGATAGCCTGGACCGTGAGAGAATTGGTCAAGCAAAGCAAGAATTCCAGG TGTTTTAATCAAATTTTAATATCATATTATGTGCACATATATCATATATGTCCATTTTGTGTGTGTGTATTATTACAAAC TAACTTTGAATTGATTCATGGATGCAGGCAATCATAAATGATCCGTTTATGCTAAATAGTGTCATATTGGTGTTTGCAAA CAAACAGGATCTGGTATGTCTTTGTTACTTATTTCTTTATGTACTTTCATCTGCATTTCCTGACATCAAGGCTATCTCCG TGACTGAAGATCTCATAGCCAAAGCTTGTAATCGGTTGAAATAGTGACATTGTTTACTGAATAAGTTAAAAGGAGTGTAT AGGATGTAATAATACATATTAATGTTTGGTTTTTACATCACTCCATTTATCAAAACAATTAAAATCATATCGAATTAGTT AGAAGGCCTCTGAATTGTTAAAACTTTTTATCATATATCCTCTTGTATTAGATAGAAACTTTTCATAGTTGTACCTAGCA ACTTAAATTCTCTTTGTCTGTACACCAAGTAGTCCTCCTGGTTGCTTCTTCTTCAAAGGGTCTGACTCTCCAGCCATATT TAGCTTCTCCTTAATCGCACACCAATCTATATTCATATCGAAAGTTTTAGACAAATTCTCTGCCATTCAAATTACCAGCA CCTCTTGTTTATCTCGTATAATTGTGTAAGATTCCTAGATGTCATGAGTTTTATGGAGTCATTTGTGTGGATTTCCCTGT AGTAAATAATGCAATACTATCCCATACATAAAATTACAGGCTTTTGTTTGTGCCAGTTCAGTCATGGAGTATCACACCTA GACAAATTGAAATGAACACCTGGATTTGTTTTACTTTATGCTCAAGTCTGGTCATAACTCATAATTGTTAATAATTTCTT CTTCTTTTGTAGAGAGGGGCAATGACGCCAATGGAAGTATGCCAAGGACTCGGTCTGTTTGATCTAAAGAACAGAAAATG GCACATACAAGCCACTTGTGCACTTAAGGGTGATGGCCTTTATGAAGGCTTGGACTGGTTGTCTTCAACTCTGAAGGAGA GACAAGCTGCTTGATACTCCTCTTCAATTGGAACATTATCCTTCTAA
CDS sequence (LotjaGi2g1v0448800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTGGTCTTGATGCTGCTGGAAAGACAACTATACTGTACAAACTCCACATTGGAGAAGTTTTATCAACTGTTCCTAC TATTGGCTTCAATGTGGAGAAAGTTCAGTATAAGAATGTTATTTTTACTGTCTGGGATGTTGGAGGACAAGAGAAATTAA GGCCACTCTGGAGGCACTATTTTCAAAATACAGATGGTCTGATTTATGTTGTTGATAGCCTGGACCGTGAGAGAATTGGT CAAGCAAAGCAAGAATTCCAGGCAATCATAAATGATCCGTTTATGCTAAATAGTGTCATATTGGTGTTTGCAAACAAACA GGATCTGAGAGGGGCAATGACGCCAATGGAAGTATGCCAAGGACTCGGTCTGTTTGATCTAAAGAACAGAAAATGGCACA TACAAGCCACTTGTGCACTTAAGGGTGATGGCCTTTATGAAGGCTTGGACTGGTTGTCTTCAACTCTGAAGGAGAGACAA GCTGCTTGA
Protein sequence (LotjaGi2g1v0448800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFQNTDGLIYVVDSLDRERIG QAKQEFQAIINDPFMLNSVILVFANKQDLRGAMTPMEVCQGLGLFDLKNRKWHIQATCALKGDGLYEGLDWLSSTLKERQ AA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | 1 | 155 | 155 | 1.06935E-103 | – | |
| Pfam | 1 | 155 | 155 | 6.7E-66 | ||
| TIGRFAM | 1 | 115 | 115 | 8.9E-20 | ||
| Gene3D | 1 | 156 | 156 | 1.3E-60 | – | |
| ProSiteProfiles | 1 | 156 | 156 | 21.728 | – | |
| PANTHER | 1 | 162 | 162 | 5.7E-103 | – | |
| PANTHER | 1 | 162 | 162 | 5.7E-103 | – | |
| SMART | 1 | 156 | 156 | 1.6E-9 | – | |
| SMART | 1 | 160 | 160 | 1.5E-83 | – | |
| SUPERFAMILY | 1 | 159 | 159 | 1.47E-52 | ||
| PRINTS | 26 | 50 | 25 | 3.3E-9 | ||
| PRINTS | 53 | 78 | 26 | 3.3E-9 | ||
| PRINTS | 98 | 119 | 22 | 3.3E-9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi2g1v0448800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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