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Field | Value |
---|---|
Gene ID | LotjaGi2g1v0448800 |
Transcript ID | LotjaGi2g1v0448800.3 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | ADP-ribosylation factor; TAIR: AT5G17060.1 ADP-ribosylation factor B1B; Swiss-Prot: sp|P91924|ARF_DUGJA ADP-ribosylation factor; TrEMBL-Plants: tr|I3T232|I3T232_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0448800 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:94248395..94251195) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGTCAAGCTTTTCGGAAGCTCTTCGATACCTTCTTCGGCACCTCTGAGATGCGGGTACGGCAACCCTTTCTTCTTCT TCTTCTTCTTCTTCTTCGATTATCTAGCTTCTTTTCTGTAAAAACAACCTCGTTTGTCTAATTTGCTGCAAATTTAAATT TATTGTTTCTTTGATCTGGTTGGCATAGGTTGTGATGCTTGGTCTTGATGCTGCTGGAAAGACAACTATACTGTACAAAC TCCACATTGGAGAAGTTTTATCAACTGTTCCTACTATTGGTGGGTCTTATTTTCTTCTATCAAAGAAATTCATGCTTAAT TTCAACTTCTATCGGGGTGTGTTTGGATAAACAGCTTAATTAACCACTTATTATCGCGTATTCATAAGCTAATTTGAGAA ACTTATTGAAATAAGCTCATAATAGGTTATAAGTAGGTATAAGCTTTTTACATATGCGCTCTCAAATGGGGCCTAAGTAT GTATGAGGATATGCTGAGCTGAGTTGAGTTGCATAGTTGTTTCCTAGATTGTTTGAAGACATGGAGGGATTTTTTTTTAT CATGAAAGTAGTTTTTCTGCAGCTGAATTTCTTGTGGTAAAAGAGAATTTCCTCTCTTCGTTGGTAGGGATAATATCTAT TACTTTCAGCAGTGAGTAGAATGGAATTAAATCAGAGCTAACATATATGCAATTGTCTTTGAAGTTTCAAGTCCAACAAA AAGTTAGAATTGCACAAATTTATCAACAATTATGTAGTTCTTTCTCAAAATCAGTTTCTTCCTTCAATTGCTGGAATCAC GTTTTCACAAAAGCTTAAGGAATTTGATTTTTGTTCCTGAGATGGGATTCTAGCGTCTTCAAATGCTCCGCTAGACTTTA CTAAGTCCTTCTCCATTCTCTTGAATGTGGTTGTTGGTTATAGTAATTCCCATTCTGCAAGAATAGAGGTTTGGCAGAAC AAACATTGATTCTATAAAAATGTTTGATTCAGACTCAAGATGTAAGTAAGAGTTGAGCCATATCTGGCAGTTATTTTTAA CAAATATTCTTCTAAAGCTTTTCACAAGATCACATTTCAGTTCTTTTATCCAGCTTGAGGGTACTGTTACCTTGTTTGGT ATTTCTGTTAATAAATTATGAAAAGCACTGTTTATTGTCCAGATTTCCCATGTCAAGGGAGATAAATTTCCCTCTTTTAT TTTATTGAACTATTTTGATCCTTCTTTTCATTAAGGTTTTCTTTGACAGCCAAAATAATCAGGTCATGTCAATACATGCA AGCCCTGGTGTTTTTGGCTGTCAAATGGGTCTGTAGTTGTTTTTATAGGCTTATAAGTTGTATTGCCTTGCAGGCTTCAA TGTGGAGAAAGTTCAGTATAAGAATGTTATTTTTACTGTCTGGGATGTTGGAGGACAAGAGAAATTAAGGCCACTCTGGA GGCACTATTTTCAAAATACAGATGGTCTGGTAAGAATATATCTCCTTGCGCCTTTTTCTTTTCCCAGTGAAAAGGAAGGT TGTGCTCTTGTAGTTCTTTTGTGAGACTTTCCTTCTTTTACCATCTTTAATTTGTCCAATGAGTCTGGAAAGACAAGTAA ATGTGCATAGGCTAGCAAAATTGATATTTATAAACAGGTGTGAACTTTTGCAGATTTATGTTGTTGATAGCCTGGACCGT GAGAGAATTGGTCAAGCAAAGCAAGAATTCCAGGTGTTTTAATCAAATTTTAATATCATATTATGTGCACATATATCATA TATGTCCATTTTGTGTGTGTGTATTATTACAAACTAACTTTGAATTGATTCATGGATGCAGGCAATCATAAATGATCCGT TTATGCTAAATAGTGTCATATTGGTGTTTGCAAACAAACAGGATCTGGTATGTCTTTGTTACTTATTTCTTTATGTACTT TCATCTGCATTTCCTGACATCAAGGCTATCTCCGTGACTGAAGATCTCATAGCCAAAGCTTGTAATCGGTTGAAATAGTG ACATTGTTTACTGAATAAGTTAAAAGGAGTGTATAGGATGTAATAATACATATTAATGTTTGGTTTTTACATCACTCCAT TTATCAAAACAATTAAAATCATATCGAATTAGTTAGAAGGCCTCTGAATTGTTAAAACTTTTTATCATATATCCTCTTGT ATTAGATAGAAACTTTTCATAGTTGTACCTAGCAACTTAAATTCTCTTTGTCTGTACACCAAGTAGTCCTCCTGGTTGCT TCTTCTTCAAAGGGTCTGACTCTCCAGCCATATTTAGCTTCTCCTTAATCGCACACCAATCTATATTCATATCGAAAGTT TTAGACAAATTCTCTGCCATTCAAATTACCAGCACCTCTTGTTTATCTCGTATAATTGTGTAAGATTCCTAGATGTCATG AGTTTTATGGAGTCATTTGTGTGGATTTCCCTGTAGTAAATAATGCAATACTATCCCATACATAAAATTACAGGCTTTTG TTTGTGCCAGTTCAGTCATGGAGTATCACACCTAGACAAATTGAAATGAACACCTGGATTTGTTTTACTTTATGCTCAAG TCTGGTCATAACTCATAATTGTTAATAATTTCTTCTTCTTTTGTAGAGAGGGGCAATGACGCCAATGGAAGTATGCCAAG GACTCGGTCTGTTTGATCTAAAGAACAGAAAATGGCACATACAAGCCACTTGTGCACTTAAGGGTGATGGCCTTTATGAA GGCTTGGACTGGTTGTCTTCAACTCTGAAGGAGAGACAAGCTGCTTGATACTCCTCTTCAATTGGAACATTATCCTTCTA A
CDS sequence (LotjaGi2g1v0448800.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTCAAGCTTTTCGGAAGCTCTTCGATACCTTCTTCGGCACCTCTGAGATGCGGGTTGTGATGCTTGGTCTTGATGC TGCTGGAAAGACAACTATACTGTACAAACTCCACATTGGAGAAGTTTTATCAACTGTTCCTACTATTGGCTTCAATGTGG AGAAAGTTCAGTATAAGAATGTTATTTTTACTGTCTGGGATGTTGGAGGACAAGAGAAATTAAGGCCACTCTGGAGGCAC TATTTTCAAAATACAGATGGTCTGATTTATGTTGTTGATAGCCTGGACCGTGAGAGAATTGGTCAAGCAAAGCAAGAATT CCAGGCAATCATAAATGATCCGTTTATGCTAAATAGTGTCATATTGGTGTTTGCAAACAAACAGGATCTGAGAGGGGCAA TGACGCCAATGGAAGTATGCCAAGGACTCGGTCTGTTTGATCTAAAGAACAGAAAATGGCACATACAAGCCACTTGTGCA CTTAAGGGTGATGGCCTTTATGAAGGCTTGGACTGGTTGTCTTCAACTCTGAAGGAGAGACAAGCTGCTTGA
Protein sequence (LotjaGi2g1v0448800.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGQAFRKLFDTFFGTSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRH YFQNTDGLIYVVDSLDRERIGQAKQEFQAIINDPFMLNSVILVFANKQDLRGAMTPMEVCQGLGLFDLKNRKWHIQATCA LKGDGLYEGLDWLSSTLKERQAA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
SMART | 1 | 181 | 181 | 3.5E-101 | – | |
PANTHER | 1 | 183 | 183 | 1.5E-117 | – | |
PANTHER | 1 | 183 | 183 | 1.5E-117 | – | |
Pfam | 7 | 176 | 170 | 9.9E-70 | ||
SMART | 9 | 177 | 169 | 2.1E-15 | – | |
ProSiteProfiles | 11 | 177 | 167 | 23.028 | – | |
TIGRFAM | 16 | 136 | 121 | 3.6E-22 | ||
SUPERFAMILY | 16 | 180 | 165 | 2.31E-55 | ||
CDD | 18 | 176 | 159 | 2.68462E-106 | – | |
Gene3D | 18 | 177 | 160 | 6.4E-62 | – | |
PRINTS | 19 | 42 | 24 | 6.1E-17 | ||
PRINTS | 47 | 71 | 25 | 6.1E-17 | ||
PRINTS | 74 | 99 | 26 | 6.1E-17 | ||
PRINTS | 119 | 140 | 22 | 6.1E-17 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi2g1v0448800.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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