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LotjaGi2g1v0451200.1

Overview

Field Value
Gene ID LotjaGi2g1v0451200
Transcript ID LotjaGi2g1v0451200.1
Lotus japonicus genome version Gifu v1.2
Description Dehydrodolichyl diphosphate synthase complex subunit NUS1; TAIR: AT1G11755.1 Undecaprenyl pyrophosphate synthetase family protein; Swiss-Prot: sp|Q96E22|NGBR_HUMAN Dehydrodolichyl diphosphate synthase complex subunit NUS1; TrEMBL-Plants: tr|G7K548|G7K548_MEDTR Undecaprenyl pyrophosphate synthetase family protein; Found in the gene: LotjaGi2g1v0451200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:94445434..94448646) extracted from Lotus japonicus Gifu genome v1.2.

AATTATTTTCCCACATTCCAATCATTCTCTCTCTCGTGCTTATTGTGTCATCAACGCAAGAGTTGCAGCAGCAATTAGCG TCGATTAGGGTGGTGCTGCTGGCCATTGGAATACGTGAAAAGCAGCAGCAGGTAACGGAATCACTTTTTTCCTTTCCAGT TAGTTCTGTTCAATTTTTCATTTCGATTTTAGAAAAATCAGGATTACTAGTGATAATCATATTATGTTCAATTTACTCAT GATAATTATCCTTACTGGGCTTAGACATTACTAGTGACTGATAGCTTCTTCTTCTTTTTTGTTTTCAAATTGATGGATTT GATGTTTTCTTACTTTTAGGATGGTGAATTTTAGAGATGAAGCTCTCAAGTTGTCTAATTGCTTTGTTACTGTAAGTGTT CAATTTTCTATACCCTTGAATTGCATGTGCTTGGCGAGTATTTCGGTTTGGGGATGAAATGCAACATAGCACATTTTTAT ATGCAATCTGAAATTTGAAACTTCATTCATTGTGGTGCTGATTGGAAATCTTGGGCTTCAGCTTCTATGGTACTTTCTGC AAATAATTGTCAGCACATGGTGTTTTGTATCAGCCATGGTTAGTTTGTTTGAAAGCTATTTCATCTCTTATGGAGTATTG AAGAAATACAAGTCTGTTCATATAGGGAAGGTTAGGTACCTTGCCATTGTCATAGAAAGCGAAGATGCTAACCAGACGTC AAAAGTTGTTAAACTTCTGGAGTGGCTGGACTCTATTGGTGTGAAATATGTCTGCCTCTACGACATGAATGGTATGAAAG GTTTGGAGAAGCAGTGATTGTCAACTTTCTTTTATTTAGGCCACTTCTTGTTAATTTTTTCCCTGAACTCTACATTCTAG GAGTGTTGAAGAAGTCTAAGGAAGCCATATTTCAAAAGTTCAAGAATGCAAAATCCATAGAGGTACCGTAGATTTATTTT TCCCACGGCATTTTGATTCTTTTTTAACATATTAATAAATTTTCTTCCTGGTGCATGATTTTAACCTGCTTTTGACCAAG CAGTTCATCTTATATGTTTGCCAATGTTAATCTCATAGTTTGGGTATTTCTCACATGCACCTCATTTCTATTGTCTGGTT ATTTTTTCTGTGCGGGGGTGGTGGAGGATATAGACAAACATTTATTTAGACAATGGGAGATGATGCATCAAAGATGGAGT TAAAATGTTTTTACACCTGATATTTGTTGAATGAATGTTATCTCATTTCCAATTGCCATCTAAGAAAATTATTGACGAGG AGATGAAATGCATGTTTCTGTTGATATATTATATAAGCAACATGTTTCTGTCTAGACTTGTTATGATCTGGTAAGATGAG GGGAGAGAAAAAACAAGGGAAAAGTCTATAAAGTAATTTATAAATTTTAGGTATTTGGATGGTTGCTTGAAAATAGGATT GATGAAAAGGTACCTGAGTCTACAAGAAAATTCCATCTGATCGAAGATGACGTGAAATGGGAGAGAACATACTCTGTAGT GCAGCAGCCATATCTTTTAAAATTTCACTTCCCCCAATCATGAGAAAATTGATACACAAACACACCACCTGAAAATGAGG GAGAAAGAAATGCAATTCTTTTTATTTGCTTTCTTTCCATTTTCTCCTCACATCCAAACATATGCTAGTATATTGTATGG ACTCTCATTTAGCTGTCCTAACAAGCCTCAATAGATAGTCACTTCTGTTTTCCCACTTATCTGATCTCATCTAACTTTAA CTCAGTGCAGGAAGTTAATGGAGCTGTCACGCACCATGTTCCTGATCACATGATTTTAGAATTTATTTCTTATGTAGATG GGAAGGAGGCATTGGCCAAGGCAGCTAACTTGATTTTTGTGGATAATTTGAAACAACATAACTTGGGTGGAGGACTTAAG GGTCAAATCTTGTTAGAGTCGCAACTGAATGAGGCACTGCAAATTGTTGGTATTTTTGCTTCCTAAACCTACTAATTATT CAAAGAGTTGATTTCCTGGTTCAATATAGCTCTTATCCAAATAGCAACAATCTTGTTTTACTGTCAGGTGGCAAAGGCCC AGAACCTGAAATTTTACTGGTTTATGGACCTGTGAGGAGCCATCTCGGTTTTCCTGCGTGGAGAATTCGGTATACAGAGA TTGTGTATGTTGTTTCAAGGAAATCATCATCATCTCAGTGCAATAAAAGAAATTAGCTTGTTTGTTTTCATGAAGTGCAA CAATGCTTATTATGCATAGAAGCTAAAAGAACCAGTGACTCTGTTATGTGTGTTTTCTGTTCTGCGTTAGGCTTATCAAC TTGGCTTAGTTTGTTAACAATAAGCTGAAATAGAAGTCCATGTTAATGAAATTAGTAATCTTTGAGTGGTCAGTGAATAC TGAATATCATTGGATCTGATTTAGTTTCTCTTTATTTGCTTTATGTTTTCCTCCCCCCCTCTTTTTTTGTTTCCTTTCTT GGGTATTAAATCTGTCTTAGAATTGCTATTCCAAAGTTCTGTGCTGAAGCTTTAAACGTTAAGAAATGAACTTCCATGCA TTGCATTGGTTGTCTGTGATGTGAGTGTCAGAAGTTCCATTTTGTGCATAGCCTCTTTTTTCTATTCTTTCTTTGATTTT ATCCTGACGGATGTTTATTTCAGGCATATGGGACCATTGAACTCAATGAGATACGGTTCTTTAATAAAAGTTATTCACAA CTTCACCAAAGTGCACCAAAATTATGGTAAGTGATCTCTTTACTAAGAGTTGTTTACTGCTCTGCCATTGCTTGATAGTA CATATCATTTTGTAATTGCAATCTGTTTTCATTATATTTTTTCGGGATTGCTAACAGGTACATAGGGGAGGAATTTTGAA GTAATGGACTGGGCAAGCACAAGGCATAGTATAGAATAATATCTAGCTAAATATCTTTGTGGAGGAAGGGCTTCCTCACT AGTCACTAGTATTGTGTAAATATGTCATGATGAGATATAGCAGGGCAAGTCATGATTTAGTTTCACTCACTATTAATTTT TCAAATGCAAGATTATACGATGTTTAATTGCATTTCTTCGGGTGGTATATGTTTGATTCTCCTTTAAATAATGTAATTTT TGAGTAATATATATATATATATATATATATATATATATATATTCTTACAAGTTAATACACATTTCGAATAAATACTTAAA GATTGTTTAAAAG
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0451200.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTGAATTTTAGAGATGAAGCTCTCAAGTTGTCTAATTGCTTTGTTACTCTTCTATGGTACTTTCTGCAAATAATTGT CAGCACATGGTGTTTTGTATCAGCCATGGTTAGTTTGTTTGAAAGCTATTTCATCTCTTATGGAGTATTGAAGAAATACA AGTCTGTTCATATAGGGAAGGTTAGGTACCTTGCCATTGTCATAGAAAGCGAAGATGCTAACCAGACGTCAAAAGTTGTT AAACTTCTGGAGTGGCTGGACTCTATTGGTGTGAAATATGTCTGCCTCTACGACATGAATGGAGTGTTGAAGAAGTCTAA GGAAGCCATATTTCAAAAGTTCAAGAATGCAAAATCCATAGAGGAAGTTAATGGAGCTGTCACGCACCATGTTCCTGATC ACATGATTTTAGAATTTATTTCTTATGTAGATGGGAAGGAGGCATTGGCCAAGGCAGCTAACTTGATTTTTGTGGATAAT TTGAAACAACATAACTTGGGTGGAGGACTTAAGGGTCAAATCTTGTTAGAGTCGCAACTGAATGAGGCACTGCAAATTGT TGGTGGCAAAGGCCCAGAACCTGAAATTTTACTGGTTTATGGACCTGTGAGGAGCCATCTCGGTTTTCCTGCGTGGAGAA TTCGGTATACAGAGATTGTGCATATGGGACCATTGAACTCAATGAGATACGGTTCTTTAATAAAAGTTATTCACAACTTC ACCAAAGTGCACCAAAATTATGGTACATAG
Download CDS Sequence

Protein sequence (LotjaGi2g1v0451200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVNFRDEALKLSNCFVTLLWYFLQIIVSTWCFVSAMVSLFESYFISYGVLKKYKSVHIGKVRYLAIVIESEDANQTSKVV KLLEWLDSIGVKYVCLYDMNGVLKKSKEAIFQKFKNAKSIEEVNGAVTHHVPDHMILEFISYVDGKEALAKAANLIFVDN LKQHNLGGGLKGQILLESQLNEALQIVGGKGPEPEILLVYGPVRSHLGFPAWRIRYTEIVHMGPLNSMRYGSLIKVIHNF TKVHQNYGT
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
NON_CYTOPLASMIC_DOMAIN
1 19 19 - –
PANTHER
PTHR21528
11 249 239 4.9E-71
IPR038887
TMHMM
TMhelix
12 34 23 - –
Phobius
TRANSMEMBRANE
20 45 26 - –
Phobius
CYTOPLASMIC_DOMAIN
46 249 204 - –
SUPERFAMILY
SSF64005
63 241 179 3.92E-17
IPR036424
Gene3D
G3DSA:3.40.1180.10
101 249 149 2.9E-6
IPR036424

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0016765
Molecular function Transferase activity, transferring alkyl or aryl (other than methyl) groups Catalysis of the transfer of an alkyl or aryl (but not methyl) group from one compound (donor) to another (acceptor).
Subterm of
GO:0019408
Biological process Dolichol biosynthetic process The chemical reactions and pathways resulting in the formation of dolichols, any 2,3-dihydropolyprenol derived from four or more linked isoprene units.
Subterm of
GO:1904423
Cellular component Dehydrodolichyl diphosphate synthase complex A protein complex which is capable of dehydrodolichyl diphosphate synthase activity.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0451200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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