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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0455900 |
| Transcript ID | LotjaGi2g1v0455900.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Vacuole membrane-like protein; TAIR: AT4G14950.3 SNARE associated Golgi protein family; Swiss-Prot: sp|Q5XF36|KMS1_ARATH Vacuole membrane protein KMS1; TrEMBL-Plants: tr|B7FLS1|B7FLS1_MEDTR Vacuole membrane-like protein; Found in the gene: LotjaGi2g1v0455900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:94899482..94903578) extracted from Lotus japonicus Gifu genome v1.2.
TCTTCTGGGGGCGCTCACATCTCCATCTCAGGCTAGTTTTTTTTTATTTCCTATCATGTTCTGCTTGATTTTTGGATCTG TGAAATTCTAAATGGATTAGTGAAATCAAGATAATGCATTCACCTTAATTTGGAGTGTTAAATCCATTCAAAGGAGTTTT GGAGCAATATATTTATCATAATACTGTATGTTATGGTTAATTTCCTCAATTAGGTTATACAAGTTAGTTGTTACTATTAT ACGATTAATAGGTCTTTATTTTGTAGGGCTTCATGCGAAGCACCAACTGGAGCTACAAAATTTGACACTAACTACACAAC CTTTCAAAACATTGAAATTCTCCACACTATCTGTGATTCAATACATAAAGAAAACTACATTGTATCTGTTGGCAAAAGGT GGATGGCTTATGCTTTTCAGTATCGCCGTAGGGACTATTGGCATTTTGCTCATGACCCTTGGTTGCCTCCATGAGAAGGT ACTTTTATGTTTTTACTCAATAACTTTTAGTTCTTGATCAAAGCTTCCATGGGAAACAATTTTTTTGTAATTCTTTTTTG GCTATTATATTTGCATGCCATGTCATGCAGTAATTGTATAAAATTTGTAACCAGCCTAAGTGTTAATATTGGTATTTGAT CATTGTGTGAAGATCAAGTTAATTAGAATCAGATTTTTTTGAGTCTGGAAACTATATGCGGAATTTTGTAATTTAATTTC TATTGTAATACACTGACATGTTAAGTAAACCTTTGAATTTTTTCCAGTTAGTTATTTTGTTCATTTTGTTTCGACACTCA CGTGGAGTCTATAAATGCTTTTCTTTTTTGCAGCATCTTGAGGAGTTCCTTGAATACTTCCGCTTTGGATTGTGGTGGGT GGCCCTTGGGGTCGCGTCTTCAATTGGTCTCGGTGAGTAAAATAGGCATGCACCGAGAAAACTCTTCTTGGTTATGTAAC CGTAGTATTATGATTGGTCCTATAGGTAGCTTGTGCTGTGTGATTTGAACCTAAAGAAAGCAAGTGCTTGCATTATGTAG ATTTTCTACTTATGTGAGGAATTACTGATCCTTTGCTATCATCTTGATCATATGCCTTGTAGTCCATGAGTTTGCATTTT CCCTCTTATAGCTAAATTGTTCTCTTATCATTTTTATTTGGTTCAGGATCTGGATTGCACACATTTGTCCTGTATCTGGG TCCTCACATTGCACTGTTTACAATAAAAGCAATGCAATGTGGTCGAGTTGATTTGAAAAGTGCTCCATATGATACAATAC AGTTGAAAAGAGGTCCTTCTTGGCTTGATAAAGACTGTTCTCTGTTTGGGCCACCATTATTCGAGTCAGTATATGGTTCA CGGGTTCCCCTCAGCAGCATTTTACCTCAAGTCCAGGTGGAGGCTGTTTTATGGGGTTTAGGAACAGCAATAGGGGAGCT TCCTCCTTACTTTATCTCCAGGGCAGGTATGACGGGTCTAATCACATGCTACTCTCATTGTCTTCCATTAGCAAATAATC TGATTTTAGCACTGCATTACTGTTAAAATTTTTGTTAATTTGTCAATTGTGTTGTAACTTGGAGTCTATAGAAAACAGGA AAGAAGACATAAATAGGATTAAAACCTTCCGTCTCTTTCCTCTGACCCCAACCTTGTCTCTCCAATTACAAATTGACACA TCATTTAAAATTTCCAAGTCAGATATCCATTAAGTTTAACTACAACTTAATGACGTCACCCATTTTTTGCTCTCCTTGGC ATCTTTCGCTCTCCCTGGCGTCACCCATTTTTCCACCCACACCACCTCTTTGGAAGAGTTCTTCCCATAGATCTATCTTG ACCAACTAATTATGACAAAAGGAAAAAGATTAAATCGAGCAGTGGCTGAAAACTTGGCCAAAGTATCAATGTGGCAAAAT TATTCCCGTAAATATAATTGCTCAAGTGGCTGTGTAATATTCCACACAAAAAAAACTAACTTGCTGTTTTTCCAACAAAA AGATTAATCCTGGCTTCTGAATCTTTTCTCCTCATGGTTATCTACACAATGAGTCATGTTGCATAATGCATAGAACTTTA AAATGAATGAAACAACCAATCATGAGACTTTGTTATGCAAATAATATTATTGTTAGAAAGTTAGGATCCATCAACAAATG TTGAAGTAAATTAGGTAAAATGTAAGTATAGTGGACGAAAGAAATTGAAGAGAGACAATCTTATGAATGTATCCTACTGT TTGGTGCTTATTCATTAGTTTGTTTATAGATGATTCTAATGAAATTATTCATGCAGCACGCATGTCTGGGAGCAGAATGG ATGCCATGGAAGAGTTAGATAGTGACGATAAAGGAGTCTTGAATCGAATCAAGTGCTGGTTTCTTTCACACTCGCAGCAT TTGAATTTCTTTACCATTCTAGTACTTGCTTCGGTTAGTATGTACTTCATGTTTCATTTCTAGCATGGCCTTTTCCTCAT TCTTAAATAGTTTATGCATTTTCTTCTGCAAAAATATTTGGTAGGATGTTATTGGTATTAGAGGCCTTTTGTCTATGGCA ACTTTTTGAGCTGGTTTGTTAGCCTTGACTCAATCAGTAAACAGCTTATTCTTCTGAGTGTCAATTTTTTGCTACCTAAA TGTGAATGTGCATTCTTGATTCATCACAATCATATAAGTATTTCCCTTTTTTTTCTTTGGGGGGGGGGGGGGGGAGGGTT CGAAAATGACCGTTACTTTTAGGCATGCAAGTAATTTTTTTTAGTTTAAGGTTGACTGGACAACTTATGCTGATTAGTTG AAATCTTTACCCAATTAGTAATTGCTGTTAAAGTTTCTTAATTGTGGTCCTGTGCATAGTAGCTTCATTGCTGTAACTGC TGTTCATTTATGAATATGTTTGCATCTTCACAATCCATAGTACATACACAAGTAATATTGCAATTATTTTGTTTCTGGGT GCTGTGCTGCATTTTTCAGTTTTGCCTGTTCTATCACTTTTAAATAAAGACATTAGATTTAGCATTTCTTTTATTTGCTT TAACATGTAAGCTTCTATTAACTGGATTTATATTTCAGGTGCCAAATCCTCTATTTGACCTTGCTGGAATTATGTGTGGA CAATTTGGCATTCCATTTTGGAAATTTTTCCTCGCAACCTTGATTGGAAAGGCAGTGATTAAAACTCACATACAGGTTTG TACATGTTTTAGATTTCTCTTGTCCCTTTATCTTCTATTTTGCCCCTTTTAAGCCTTTCATTTGCTTTGCAACTTCTCCA AATGTTGACCAAGCATAATGGCATCAGGTGATCCATATGATCTCACTTAGTGGCATAAGACTTTTGTTGTTGTTGTTGTT GTTGCGGATGCCACCTGATCTTATTATTTAAATGTATTATCAGAATTGGAACCAAGTTGATCGTACTTGTAACCTCGGAG GACACAAAAATGGATGTTTACTCTTCAATAAAATAAGAAACCCTCTTAGGCACAATGCTAGTAAAAGTATTTGACTAACA CTGCATATTATATACTTTCTGCAGACAGTTTTCATCATCTCAGTTTGCAACAATCAACTTCTTGACTGGATAGAAAATGA ATTTATCTGGGTTCTCAGCCATATACCTGGCTTTGCATCTGTCTTGCCTACAGTAATTGCAAAACTCCATGCAATGAAAG ATAAGTATCTGAAAGCACCCCATCCAGTTTCTCCAAATATTCAGGTACCCATTTACTGCAATGTAATGTCAAAATGTGTT TATCCTTGATCCTGCTTCTACTTTGATTAGAATGATAAGTTGCTAAATACTGACTAACAGCCTCAAAAAGTCTTGTTTAT TTCTTAGATACATGTCCATTGATTGCGTCTTTGTTTTCTGGAAATTATTTCATTGTCATCATCATCACCATCTTCAGGGT AAAAAGTGGGATTTCTCGTTTGCTTCAATCTGGAATACTGTTGTGTGGCTCATGCTCATGAACTTCTTTGTCAAGATAGT GAATGCAACTGCGCAGACGTATCTGAAGAAACAACAGGAGAGAGAGCTGGCTGCCTTAACCAAAAAGTTCACCACATCAG ATTCAGACACACAATGA
CDS sequence (LotjaGi2g1v0455900.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTTTCAGTATCGCCGTAGGGACTATTGGCATTTTGCTCATGACCCTTGGTTGCCTCCATGAGAAGCATCTTGAGGA GTTCCTTGAATACTTCCGCTTTGGATTGTGGTGGGTGGCCCTTGGGGTCGCGTCTTCAATTGGTCTCGGATCTGGATTGC ACACATTTGTCCTGTATCTGGGTCCTCACATTGCACTGTTTACAATAAAAGCAATGCAATGTGGTCGAGTTGATTTGAAA AGTGCTCCATATGATACAATACAGTTGAAAAGAGGTCCTTCTTGGCTTGATAAAGACTGTTCTCTGTTTGGGCCACCATT ATTCGAGTCAGTATATGGTTCACGGGTTCCCCTCAGCAGCATTTTACCTCAAGTCCAGGTGGAGGCTGTTTTATGGGGTT TAGGAACAGCAATAGGGGAGCTTCCTCCTTACTTTATCTCCAGGGCAGCACGCATGTCTGGGAGCAGAATGGATGCCATG GAAGAGTTAGATAGTGACGATAAAGGAGTCTTGAATCGAATCAAGTGCTGGTTTCTTTCACACTCGCAGCATTTGAATTT CTTTACCATTCTAGTACTTGCTTCGGTGCCAAATCCTCTATTTGACCTTGCTGGAATTATGTGTGGACAATTTGGCATTC CATTTTGGAAATTTTTCCTCGCAACCTTGATTGGAAAGGCAGTGATTAAAACTCACATACAGACAGTTTTCATCATCTCA GTTTGCAACAATCAACTTCTTGACTGGATAGAAAATGAATTTATCTGGGTTCTCAGCCATATACCTGGCTTTGCATCTGT CTTGCCTACAGTAATTGCAAAACTCCATGCAATGAAAGATAAGTATCTGAAAGCACCCCATCCAGTTTCTCCAAATATTC AGGGTAAAAAGTGGGATTTCTCGTTTGCTTCAATCTGGAATACTGTTGTGTGGCTCATGCTCATGAACTTCTTTGTCAAG ATAGTGAATGCAACTGCGCAGACGTATCTGAAGAAACAACAGGAGAGAGAGCTGGCTGCCTTAACCAAAAAGTTCACCAC ATCAGATTCAGACACACAATGA
Protein sequence (LotjaGi2g1v0455900.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLFSIAVGTIGILLMTLGCLHEKHLEEFLEYFRFGLWWVALGVASSIGLGSGLHTFVLYLGPHIALFTIKAMQCGRVDLK SAPYDTIQLKRGPSWLDKDCSLFGPPLFESVYGSRVPLSSILPQVQVEAVLWGLGTAIGELPPYFISRAARMSGSRMDAM EELDSDDKGVLNRIKCWFLSHSQHLNFFTILVLASVPNPLFDLAGIMCGQFGIPFWKFFLATLIGKAVIKTHIQTVFIIS VCNNQLLDWIENEFIWVLSHIPGFASVLPTVIAKLHAMKDKYLKAPHPVSPNIQGKKWDFSFASIWNTVVWLMLMNFFVK IVNATAQTYLKKQQERELAALTKKFTTSDSDTQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 18 | 18 | - | – | |
| PANTHER | 1 | 346 | 346 | 6.0E-177 | – | |
| PANTHER | 1 | 346 | 346 | 6.0E-177 | – | |
| Phobius | 1 | 2 | 2 | - | – | |
| TMHMM | 2 | 21 | 20 | - | – | |
| Phobius | 3 | 14 | 12 | - | – | |
| Phobius | 15 | 18 | 4 | - | – | |
| Phobius | 19 | 33 | 15 | - | – | |
| Phobius | 34 | 60 | 27 | - | – | |
| TMHMM | 36 | 58 | 23 | - | – | |
| Phobius | 61 | 186 | 126 | - | – | |
| Pfam | 134 | 228 | 95 | 8.5E-9 | ||
| TMHMM | 184 | 206 | 23 | - | – | |
| Phobius | 187 | 213 | 27 | - | – | |
| Phobius | 214 | 253 | 40 | - | – | |
| TMHMM | 219 | 241 | 23 | - | – | |
| TMHMM | 254 | 273 | 20 | - | – | |
| Phobius | 254 | 277 | 24 | - | – | |
| Phobius | 278 | 297 | 20 | - | – | |
| Phobius | 298 | 319 | 22 | - | – | |
| TMHMM | 302 | 324 | 23 | - | – | |
| Phobius | 320 | 353 | 34 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0455900.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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