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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0456000 |
| Transcript ID | LotjaGi2g1v0456000.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Phenylalanine--tRNA ligase alpha subunit; TAIR: AT4G39280.1 phenylalanyl-tRNA synthetase, putative / phenylalanine-tRNA ligase; Swiss-Prot: sp|Q9T034|SYFA_ARATH Phenylalanine--tRNA ligase alpha subunit, cytoplasmic; TrEMBL-Plants: tr|G7JG63|G7JG63_MEDTR Phenylalanyl-tRNA synthetase alpha chain, putative; Found in the gene: LotjaGi2g1v0456000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:94904683..94906663) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCGGAAGAGGCGGTATTGAGTTACCTGGAAAACAACAAAGAAATCTCTGATTCTGGTGAGTTTGCTGCTGAACGTGG CCTTGACCACAATGAAATTGTGAACGTCATCAAGAGCCTTCATGGTTTCAGATACGTCGATGCTGAGGTTGGTAATTCAC CGCATCACTCACATCGTCTTCTTCAGTTAATTGGAATTGGAAATGGTGTTGAATTGCGTGGTTTTTTGTGGACAGGATAT TAAGCGAGAGACATGGGTGCTCACTGATGAGGGAAACACATATACTACTGTGGGATCCCCTGAGGCGCAGCTCATGTTGG CAATACCACCAGAGGGTATCTCAAGAGATGAACTTCAGGTGATTTTGACACTCCTTTGATCTGCACGACTGCACCCAATG CTGAATTTGTAATTTATTTTTACTGATTGCAGAAAAAACTGGGTCCGTCGATTTTTAAGATAGCTTGTGCTCAGGCTGCA AAGAACAAATGGGTGGAGATGGGGAAGCAGCTCATAACTAGGAGGGTATGTAATGAATCTAATGTTAATGTTCCAGTCTT GACATTGTAAAAGATGAGATACTATGTTGTTTTGCTCATCAATTCAGTGTTAGAATATTTTGTTTTGTTGGGGATGTGTG TGTCCATTTGGATTAAGTCATTATGTTTTGGAGATTCAAGCGTGAATGATGAAGTATTTCTTATAAGCTGAATCCTTGCT GCAGGTCGAGCATGTGGATGACAGGGTTAAAGACCTGCTTCTTAAAATACAACAAGGACAGGTGTGTACTAGTATGAATG TTTTTCAGTAAATTTTTAATTCTGTTTGAGAGGAAGCAACTGGAGAAGGACTGCAGATCCTTACCCGTTTTACATTCAAC TGATAAATTTTAGCCTTCTACTCATGTAATGTTTCAGTCTAAGTTCAATAGGAAATTATGAGCTCACTCCTTCCAGTCTT TTACTTCACACACACATCCATTTGGTAATATGCACTTGCTTATTGGGGCTGACAACAGGGTAGTTTTGTTAGTTGTCATC AATCTTTTTTGAATGCTGTGTTTCGGTTATTTGCTCTTAAGCTAGGTCTTGGGTAGTAGGGTTTGTAATGATACTTTTGG TAAAATAGCAAGGTTTTGTATGGAGCACAGATTCAACTCTACATGTGAGACAGTTATAGGAAGTGGAAAGGGGCCAAGAG GGATTTTGAGATGTTTCATTTACCTGCACTTTTGTTTGTGGGTCAGTGGGTGATAGGTAGAGAGTTCTAGGGACAACTAT TTATTAGGAGGGGTTGTTGTTCTTGACCTTTTTGTTTCCCCCTCATGTTTTTATGGGTTACGTGCCCGTTTTCTTGATCA GTTTTCCTTGTGAAATTACATAGCTCATTAAAAGTTTACCTTATGTTGCAAATGCAGGGCATTGGATCAGATGATATCAA AGCACTCAAAACAAGAAAGCTTATTGTTCCACAGTAATAAAAACTTCACCTGATTTTGCAGATATACTGAATGTGCTTGA AATAACTTTGACTATTCTTTTATTATTGAAATTATTCCCGATATCTTACAATGTAGGACATGGAAAGGTTACTCAGTGAA AAAGGGTCCTAACTATGCTCCAAAGAGAAAGAAGGTTGTCACGGATTTGACGCGAGATAATTTTCAGAGGTATTTTTTTC TTAAACTGAATGTAAACTGGAATAAGAGAGGGGTTGGGGGGTTAATTTATTCAAGCTTTTGCTTTGTGTAACATATTTAG TGGATTTGTGACATCATATCCTAAGAACTCTAACTACAATGCATTACTTTGTGACAGTGGTGAATGGAAGGAATTAGAGT TCAAAGAGTACAATTACAGTGCTAAAGGTCAACCTCTAGAGAGTGGCCATCTTCATCCATTGCTGAAGGCAAGCAGATAT ATCCCGTCCCTTCTTCCTCTCCCCAACACCATAGAATAGTAATTACCTTATGGTATTTTAG
CDS sequence (LotjaGi2g1v0456000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGAAGAGGCGGTATTGAGTTACCTGGAAAACAACAAAGAAATCTCTGATTCTGGTGAGTTTGCTGCTGAACGTGG CCTTGACCACAATGAAATTGTGAACGTCATCAAGAGCCTTCATGGTTTCAGATACGTCGATGCTGAGGATATTAAGCGAG AGACATGGGTGCTCACTGATGAGGGAAACACATATACTACTGTGGGATCCCCTGAGGCGCAGCTCATGTTGGCAATACCA CCAGAGGGTATCTCAAGAGATGAACTTCAGAAAAAACTGGGTCCGTCGATTTTTAAGATAGCTTGTGCTCAGGCTGCAAA GAACAAATGGGTGGAGATGGGGAAGCAGCTCATAACTAGGAGGGTCGAGCATGTGGATGACAGGGTTAAAGACCTGCTTC TTAAAATACAACAAGGACAGGGCATTGGATCAGATGATATCAAAGCACTCAAAACAAGAAAGCTTATTGTTCCACAGACA TGGAAAGGTTACTCAGTGAAAAAGGGTCCTAACTATGCTCCAAAGAGAAAGAAGGTTGTCACGGATTTGACGCGAGATAA TTTTCAGAGTGGTGAATGGAAGGAATTAGAGTTCAAAGAGTACAATTACAGTGCTAAAGGTCAACCTCTAGAGAGTGGCC ATCTTCATCCATTGCTGAAGGCAAGCAGATATATCCCGTCCCTTCTTCCTCTCCCCAACACCATAGAATAG
Protein sequence (LotjaGi2g1v0456000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAEEAVLSYLENNKEISDSGEFAAERGLDHNEIVNVIKSLHGFRYVDAEDIKRETWVLTDEGNTYTTVGSPEAQLMLAIP PEGISRDELQKKLGPSIFKIACAQAAKNKWVEMGKQLITRRVEHVDDRVKDLLLKIQQGQGIGSDDIKALKTRKLIVPQT WKGYSVKKGPNYAPKRKKVVTDLTRDNFQSGEWKELEFKEYNYSAKGQPLESGHLHPLLKASRYIPSLLPLPNTIE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | 3 | 56 | 54 | 4.4E-10 | ||
| Gene3D | 7 | 199 | 193 | 7.5E-57 | – | |
| PANTHER | 18 | 224 | 207 | 2.0E-52 | – | |
| PANTHER | 18 | 224 | 207 | 2.0E-52 | – | |
| Gene3D | 58 | 156 | 99 | 7.5E-57 | – | |
| Pfam | 70 | 125 | 56 | 4.3E-15 | ||
| Gene3D | 71 | 125 | 55 | 7.5E-57 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0456000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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