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LotjaGi2g1v0456000.4

Overview

Field Value
Gene ID LotjaGi2g1v0456000
Transcript ID LotjaGi2g1v0456000.4
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description Phenylalanine--tRNA ligase alpha subunit; TAIR: AT4G39280.1 phenylalanyl-tRNA synthetase, putative / phenylalanine-tRNA ligase; Swiss-Prot: sp|Q9T034|SYFA_ARATH Phenylalanine--tRNA ligase alpha subunit, cytoplasmic; TrEMBL-Plants: tr|K7LSZ2|K7LSZ2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0456000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:94907371..94909574) extracted from Lotus japonicus Gifu genome v1.2.

TGCAGATTTGAAGAGATGCCGACAAATAATTTTGTTGAGAGCAGGTACTTGTTGTTTCCATATCAATAACATCCAAATCA TTTTGCTAATCTGCATGATCCTTTTATTCTTGCTTATATATATGTTATTTATAAGTTTATCATTAAAAGCATTGAAGTAC AGCAAATTATACTCGTGTATATGGAAAGTAGCTGCGCATGTTCGCTTTCACTTTAAAGCTAACTTCACATCTGAATGATT TAATCGGCAGCTTCTGGAACTTTGATGCCTTGTTCCAGCCCCAGCAACACCCAGCCCGTGATTCGCATGACACATTTTTT TTGGAAGGTTGGTAAAACCTTGATTTCTTCCAGGCTAGTCTAGTCTTCTGTGTTTCCATCTTGACTATATGTGACACGTA TCTGCAGCTCCTTCAACAACAAAAGAACTGCCTGAAGATTATGTTCAGCGTGTGCAACAAGTTCACGAATCTGGTGGTTA TGGGTCCAGGGGGTATGAGCTTGAGCACCCTCTATGCACTTTTAGCTTAGGCTATTTAATTATAGACAGATAAGTTGCAT ACTATTTTCTGAGGGAAACCTTACAATTTATTCCTTGGTAGGTATGCATATATCTGGAAAAGAGAGGAAGCAAATAAAAA TCTCTTGCGGACCCACACAACTGCTGTTTCCTCCCGGATGCTTTACCAGCTGGCACAGGTGTGCATCTTTACATGATTTT TTTTCGGTATAATGTTCTTTTGGTTGCATATGATTGTGTGGTGCTTGGTGCCATTGGGCCTCCTTCTATTCTATTTTTTT CTGTATTATTTACATTTAATGATTGAAATTTCTAAGTAATGTATTTTCATATGTTTAAGCTGGAATGCTGGATTAAGAAA TTTTACTGTGACACTCTGTATTCTACTTTTTACTTGTCTCTCCTTCCACACCAATAAGTGATTATACTTTCCAAGTTCTT GCTCTGAATTACAGTTTGTATCCTTCTATCTCCCCATTTTAATGCAGAAACCATTCTCTCCAAAAAAATATTTCTCCATA GATCGTGTGTTCAGAAATGAAGCAGTTGATCGGACACATCTTGCTGAGTTCCACCAGATAGAAGGTATGTGAGAGCTAGT AAGTTACTGGGCTTGGGATTTAGTTCATTTCAAATTGTTTTGCGAATGGTGAACATTTCACATTTGATGGTCCTATTACA ATTTTTATTTCACGTTATGGTAAAGAAGGGGTTGGGGGCATTAATATTATTGGTATAGAGTTCAGCTTCTGCTTTGGTTT AACCTACCAGGGGTTTTAATCTCAATTAAAATTTGTCAAAATATTCTGAATTTTTAGGTCTCATGTTTTGCACTTTGATT CAGGCCTTGTATGCGATAGAGGGCTCACACTTTGTGACTTAATAGGAGTTCTACATGATTTTTTCTCACGCATGGGTAAT GCTCTCTTATGCCGAAATACTTTGTATGGTTTAAATGTTGAATGCAAGTTGGGAACTTAATTAATATGTTATTGATCTTA GCTAAAAACTTTGTTCTTGAGTTCAGGAATGACCAAGCTGAAGTTCAAACCTGCTTACAATCCATATACCGAACCTAGCA TGGAGATTTTCAGGTGAGTCTTTCTGTAATGAATATTTGTTATCTTTTGTTCCTTATCTTGATATCCTGAGATTTGATGT ATTAATCAAGTACTCTTATTAGTTATCATGAAGGGTTTAAAAAATGGGTAGAGGTAGGAAACTCTGGCATGTTTAGACCT GAAATGTTGCAACCAATGGGTCTTCCTGAAGATGTCCAAGTTATTGCATGGGGACTTTCCCTTGAAAGGTGAGGAAAAAA AAACTTAGTTTTTGCTGAGAATAAAATGAATTGTTTTGTCAAATGCAATTTCTTGTTACAAAATTCTGTTAAAATCTAAT GGAACTATGGGAGAAGTGCAGTTTTTAACTTGTTATTTTACATGGAAACAGACCAACGATGATACTATATGGGATAGATA ACATCAGGGATCTCTTTGGACACAAGGTATGGCTAAAATGATTATAAAGATGGAGCTATGTGGCAACTCTGTCATTATTA TTCTTAAAATTAAAATAGTTATGTGTTATTGTTCTAAGCCATGTTTTTTAATTTTTTTTCTTTTTTGCAGGTGGATCTTG GCCTAATAAAGAAAAATCCTATATGTCGTCTTGGAATTGACTAG
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0456000.4) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCCGACAAATAATTTTGTTGAGAGCAGCTTCTGGAACTTTGATGCCTTGTTCCAGCCCCAGCAACACCCAGCCCGTGA TTCGCATGACACATTTTTTTTGGAAGCTCCTTCAACAACAAAAGAACTGCCTGAAGATTATGTTCAGCGTGTGCAACAAG TTCACGAATCTGGTGGTTATGGGTCCAGGGGGTATGCATATATCTGGAAAAGAGAGGAAGCAAATAAAAATCTCTTGCGG ACCCACACAACTGCTGTTTCCTCCCGGATGCTTTACCAGCTGGCACAGAAACCATTCTCTCCAAAAAAATATTTCTCCAT AGATCGTGTGTTCAGAAATGAAGCAGTTGATCGGACACATCTTGCTGAGTTCCACCAGATAGAAGGCCTTGTATGCGATA GAGGGCTCACACTTTGTGACTTAATAGGAGTTCTACATGATTTTTTCTCACGCATGGGAATGACCAAGCTGAAGTTCAAA CCTGCTTACAATCCATATACCGAACCTAGCATGGAGATTTTCAGTTATCATGAAGGGTTTAAAAAATGGGTAGAGGTAGG AAACTCTGGCATGTTTAGACCTGAAATGTTGCAACCAATGGGTCTTCCTGAAGATGTCCAAGTTATTGCATGGGGACTTT CCCTTGAAAGACCAACGATGATACTATATGGGATAGATAACATCAGGGATCTCTTTGGACACAAGGTGGATCTTGGCCTA ATAAAGAAAAATCCTATATGTCGTCTTGGAATTGACTAG
Download CDS Sequence

Protein sequence (LotjaGi2g1v0456000.4) extracted from Lotus japonicus Gifu v1.2 Proteins.

MPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLEAPSTTKELPEDYVQRVQQVHESGGYGSRGYAYIWKREEANKNLLR THTTAVSSRMLYQLAQKPFSPKKYFSIDRVFRNEAVDRTHLAEFHQIEGLVCDRGLTLCDLIGVLHDFFSRMGMTKLKFK PAYNPYTEPSMEIFSYHEGFKKWVEVGNSGMFRPEMLQPMGLPEDVQVIAWGLSLERPTMILYGIDNIRDLFGHKVDLGL IKKNPICRLGID
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11538
1 238 238 4.9E-131 –
Gene3D
G3DSA:3.30.930.10
1 251 251 6.6E-113 –
PANTHER
PTHR11538:SF40
1 238 238 4.9E-131 –
CDD
cd00496
3 237 235 2.0406E-102 –
Pfam
PF01409
4 238 235 4.3E-83
IPR002319
TIGRFAM
TIGR00468
4 244 241 8.2E-92
IPR004529
SUPERFAMILY
SSF55681
5 237 233 1.21E-65 –
ProSiteProfiles
PS50862
101 245 145 16.699
IPR006195

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000049
Molecular function TRNA binding Interacting selectively and non-covalently with transfer RNA.
Subterm of
GO:0000166
Molecular function Nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
Subterm of
GO:0004812
Molecular function Aminoacyl-tRNA ligase activity Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.
Subterm of
GO:0004826
Molecular function Phenylalanine-tRNA ligase activity Catalysis of the reaction: ATP + L-phenylalanine + tRNA(Phe) = AMP + diphosphate + L-phenylalanyl-tRNA(Phe).
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0005737
Cellular component Cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
Subterm of
GO:0006432
Biological process Phenylalanyl-tRNA aminoacylation The process of coupling phenylalanine to phenylalanyl-tRNA, catalyzed by phenylalanyl-tRNA synthetase. The phenylalanyl-tRNA synthetase is a class-II synthetase. However, unlike other class II enzymes, The activated amino acid is transferred to the 2'-OH group of a phenylalanine-accepting tRNA. The 2'-O-aminoacyl-tRNA will ultimately migrate to the 3' position via transesterification.
Subterm of
GO:0043039
Biological process TRNA aminoacylation The chemical reactions and pathways by which the various amino acids become bonded to their corresponding tRNAs. The most common route for synthesis of aminoacyl tRNA is by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA and the alpha carboxylic acid group of an amino acid, usually catalyzed by the cognate aminoacyl-tRNA ligase. A given aminoacyl-tRNA ligase aminoacylates all species of an isoaccepting group of tRNA molecules.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0456000.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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