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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0457600 |
| Transcript ID | LotjaGi2g1v0457600.7 |
| Related isoforms 6 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Polyadenylation and cleavage factor; TAIR: AT4G04885.1 PCF11P-similar protein 4; Swiss-Prot: sp|Q0WPF2|PCFS4_ARATH Polyadenylation and cleavage factor homolog 4; TrEMBL-Plants: tr|A0A151U707|A0A151U707_CAJCA Pre-mRNA cleavage complex 2 protein Pcf11; Found in the gene: LotjaGi2g1v0457600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:95128419..95132518) extracted from Lotus japonicus Gifu genome v1.2.
GAATCGAAACCCTAGTTGCTAATTTCTTCATCTCAACGCGCAATTCAAACATTCGTCGATCTGACAGAGCACGTCGTTCA TCCGCTAACAACAACATCGCTCGCTTGAAGCTTCCTCCGACGGCCTCCACCGCTGCAAGCAGGATCTAGGGTTGTTCCCC GAGTCTTAAATACACGTTGTTAGGGTTTGGGTTTCACCAGGATAGGAATGAAATTGTTAGATACTTGAATAGAAACAGTT TCTTTTTTAAGATTTGGTGTTCTTATTTGTATTACACATTCTTATTAGTAATTTGTTGATTTTATCAATGGATATTGTAA GACCTGTTTGCTGGCTATTTTGTTCACTGCATTTCAATTCTGTTAATTCAACTTGATTGGTAAAAAAGCAGAAATAATGG AAAGGAAATACTCTAGTTATCAAAGGACTAAGAGTATCCTTTGTTTTAGCCTCAAATTATAAATTGCACATCTCAATATC CACCTTGTGCCTTTCTTCATATTCAAGGATGAAGCAACATGAATCATTGTCCATTGTAATACAAAAATGATTGAATTGAA TCAAAATTAAACAATATGATAAGAAAAACACCAATGGATGGATAATACAAATATATTTCAATATAATAGTTCTGGATGAC ATATTAGATAAATTTCATGTTTCTAATTTGCACTTTGTTCTACCATAAAAGTGATTCTGCTTATGCTTATATCTGTTTGT ATGCTCCTGCAATAGAGAGAACCTTCAAACTAAAAGGTGCATCCTATTCCTGACAGGGTGTTTGGTTTCATCCTCACAGG TTGGAGGAGGTAATACAAGCTTTGGCCTCGTACCTAACAAAATCCAAGCCTATTAGGTATGGAAGGTCCTACTCGCCATC AAATTGTTATGCCGTTGCCCACATATGTGCATGAATATCCAGCTCACAATTATAGGGGTAGGACAATTGAGAGAGAATCT CCTCATCATGGAGTTGATTATGGACTAGTTAAAAAATTAGGTAGAGAAGTAGAGTTGAGTGAATGGCAGAGAAAGCAGTT TTCTGGTGAAGGTCCGAAGAGATTTCAAACTTCTAAGACAACATACAGTCTTATTAATGGACAACAGCGTCAAAGTCCAA GAGCTCTAATTGATGCATTTGGAGGTGACAAACGGCTGGGTAGAAATGGTATAGACAAGGTTTTGACAACGTCATGGCAG AATACTGAAGAGGAGGAGTTTAATTGGGGAGATATGAGTCCAAAATTAGCAGAACATAATACAAATAATGGTTATCTGCA GTCAACTACTGGTTTCACCACGGGAAAGCCAGTTATCGTTGGAGCTAACGCAATTTCTTCTGAGCAAGATACCAGGAAGG GTTGGTCTAGTGGGTCTCAGCTTCCTCCTGTTGATGATTCCTCAGTTATAGCAGAAGATGCATTCACCTCTTCAGCTGTA TGTTTCCTCAACTTCTATCTTTTATACTTTATCTTTCTATACAATATAATAGCAATGCGACTTTTTATCTTTGTACTGCC TAGTTCTTTAATATGATTGATGATATTGTGTTTTCCCTAAAATGCATGTTTTTGGCATGTCAGTATGTGCACTACTTCAT GAATCATATATCATTAGTACTCCAAGATTCAGTCATAATTTTCTGGTGATGGCATTGCTATTAGCTTTTCTGAGAAGTTT GAATCAAATGAAATGTCTTGCTTTCATTCATATTTTCCTGGAGATTGTGTCCTTATTTTGAATTATCTTCACATGGATTC ATTAATATCCCATTGTTAGAGTAAACTAGAAACTTTTAGTGCTTTTCTTTTAAAATTTACCATGTACTCAGGCATGGCTA ATGGCTTTTGTTTACTGATGTTTTCCTTCTAGTATTTTGAATTTGATACGCACCTTTCAATTAACTACGTCGAGTTCATC TCTCTTAGTATAATTTAATAGGAAACGGAATTTGCTAATATCTTGCTGATAGATAATGGATTTGAAAATTCATATATTCT CTGCAGTATTCTGGTGTATCACTGGGTCAGGTATCTGGATTCCAGAACCCAATAAATCAGAGTCAAGGCTCTGGTCAGCG TATTGATGCTTGGAAGATTTCTAGTCATCCATCTGTTTCTACCCGACACCCCTTTAATATTGAGAACAAAGACTTCAATA ACGGGAACCTACATCAGTTGCCTAATCAGCTAGCTGGCCTGCTTTCATCTAACCCTCAAAACCGAGGACAAGCACCACAA CTACAGTTTTTTCCATCTCAGGATCCGGCAGCATCACAATTTAGTGGGAGCTCTTTTCCAGGACATGGTGCTGCTAGAAA TACACATTTGTCAAACGCGCCACCAAATATGGCATTCCCTTTACCCGGCCAAAATATGGTGAATAACTCTTTTCATTTGC TGGGGGCAGCCTTGCCACCCTTACATCCAGCCCGACCCCCATTGCTACCTCATCCTTATCCTACTCCTCTTGTTTCAAGT CAGCAGCCAACTGTTCCATATTCTAATTTGATTAATTCACTCGTGGCCCAAGGTGTATTCTCATGGGCTAATCCGGTCCC TGCACAGGTAACTAAATCTTTTATAAGACCTTTTTTCCTTTCTTCTGCCACTGTTGATTTGATTGTACAAACAAAGAGTA ATGAAATTGAGTTATTTGTTTTCAGGATTCTGTTGGAATTGAGTTCAATCTGGATATTCTGAAGGTTCATCATGAATCTG CAATCAGTGCTTTATATGGTGATCTCCCTAGACAATGCAGAACTTGTGGTCTCCGTTTCAAATGCCAAGATGAGCACAGT AATCACATGGATTGGCATGTGACTAAGAACCGGATGTCTAAAAACCGTAAGCAGAAGCCTTCTCGTAAGTGGTTTGTGAG TGTGAGGATGTGGCTTAGTGGTGCAGAGGCATTAGGAACAGAATCAGCTCCAGGTTTTTTGCGAACTGATACGGTTGAGG AAAAGAAAGATGATGAAGAGTTGGCTGTTCCTGCTGATGAGGACCAGAATACATGTGCATTATGTCTAGAACCTTTTGGT AAGTTTTACAGTGATGAAACGGAGGATTGGATGTATAGAGGAGCTGTGTATCTTAATGCACCCAACGGAACAACAGCAGG CTTGAACAGGTCACAATTAGGCCCCATCATTCATGCTAAGTGCAGATCTGAATCTAGTGTGGCTCCATTTAATGATTTTG CGCTGGATGAAGGGGTACGCCTTTCATAATTGTCTTAGTTTCATTCTCCTTATTGTTCAAATTCTGAGCATGCATTGACA AGGCATTGTGATCATTTGAACGATTATAATTTACTTTTATTTTCCCCTACGCTTCCTGTTATGTTTTTACTTTCCCATTT GCAAAATGTACTTTTGAGGGGAGAGGTAGGGTCGAATGTGTGACAAAATGAGTGGGATGAATAAAATCGCCAAATCTAGT CGTGAGGCAGGGAAGATTCTGCCACATTGGATTCAAATATTCGTTCAACAACACTCCCATGTTTGGTTGAGTGCTCATAC TCAACATGAACTAACATTAAATTTTGAGAATGTAATCACATGACTTGTTTTGAGTAAATTTCGCCCCAACATATGCGTTT CACAAATTCAATGGAACTAAAGTTTTATGTTATATATTGTGGTTAGCCTGCAAACTGTATGGGTGGTATTTGTGCTCTTG TACATGTTACATAAACTGCCAAGTTTTGTGCCTATTAATATATAGTCTCTCTTTACTAACTCTGTTCTGCGTTATTTATT TCATGTGAGCTTATACATGTGCTCCACGCAGTCTTCAGAAAATATTTATTTTTTTCTTCTTCTGTATGCAGGGCACCAGT GAGGAAGGGAGTAAAAGAAAACGAATGCGGCATTGACTTGAGTTGAGCATTTTTTAGCGCTGTAACTAATGAGTTTCTGT TTAGTGAATGCTTTTACATCATTTTTTAAGTAGAGCTGAATCTTTTGTAAATGCTACATATCTGGGAATTGGCAAGGATT CATGCGTACAACTTACTGTCTTATTTACTGTATTTTATGTAACTCGTGCACACATGAGAGTGCAAATTTCAGACATTTGA TCTTTCTTCTTTCGTTAAAT
CDS sequence (LotjaGi2g1v0457600.7) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGGTCCTACTCGCCATCAAATTGTTATGCCGTTGCCCACATATGTGCATGAATATCCAGCTCACAATTATAGGGG TAGGACAATTGAGAGAGAATCTCCTCATCATGGAGTTGATTATGGACTAGTTAAAAAATTAGGTAGAGAAGTAGAGTTGA GTGAATGGCAGAGAAAGCAGTTTTCTGGTGAAGGTCCGAAGAGATTTCAAACTTCTAAGACAACATACAGTCTTATTAAT GGACAACAGCGTCAAAGTCCAAGAGCTCTAATTGATGCATTTGGAGGTGACAAACGGCTGGGTAGAAATGGTATAGACAA GGTTTTGACAACGTCATGGCAGAATACTGAAGAGGAGGAGTTTAATTGGGGAGATATGAGTCCAAAATTAGCAGAACATA ATACAAATAATGGTTATCTGCAGTCAACTACTGGTTTCACCACGGGAAAGCCAGTTATCGTTGGAGCTAACGCAATTTCT TCTGAGCAAGATACCAGGAAGGGTTGGTCTAGTGGGTCTCAGCTTCCTCCTGTTGATGATTCCTCAGTTATAGCAGAAGA TGCATTCACCTCTTCAGCTTATTCTGGTGTATCACTGGGTCAGGTATCTGGATTCCAGAACCCAATAAATCAGAGTCAAG GCTCTGGTCAGCGTATTGATGCTTGGAAGATTTCTAGTCATCCATCTGTTTCTACCCGACACCCCTTTAATATTGAGAAC AAAGACTTCAATAACGGGAACCTACATCAGTTGCCTAATCAGCTAGCTGGCCTGCTTTCATCTAACCCTCAAAACCGAGG ACAAGCACCACAACTACAGTTTTTTCCATCTCAGGATCCGGCAGCATCACAATTTAGTGGGAGCTCTTTTCCAGGACATG GTGCTGCTAGAAATACACATTTGTCAAACGCGCCACCAAATATGGCATTCCCTTTACCCGGCCAAAATATGGTGAATAAC TCTTTTCATTTGCTGGGGGCAGCCTTGCCACCCTTACATCCAGCCCGACCCCCATTGCTACCTCATCCTTATCCTACTCC TCTTGTTTCAAGTCAGCAGCCAACTGTTCCATATTCTAATTTGATTAATTCACTCGTGGCCCAAGGTGTATTCTCATGGG CTAATCCGGTCCCTGCACAGGATTCTGTTGGAATTGAGTTCAATCTGGATATTCTGAAGGTTCATCATGAATCTGCAATC AGTGCTTTATATGGTGATCTCCCTAGACAATGCAGAACTTGTGGTCTCCGTTTCAAATGCCAAGATGAGCACAGTAATCA CATGGATTGGCATGTGACTAAGAACCGGATGTCTAAAAACCGTAAGCAGAAGCCTTCTCGTAAGTGGTTTGTGAGTGTGA GGATGTGGCTTAGTGGTGCAGAGGCATTAGGAACAGAATCAGCTCCAGGTTTTTTGCGAACTGATACGGTTGAGGAAAAG AAAGATGATGAAGAGTTGGCTGTTCCTGCTGATGAGGACCAGAATACATGTGCATTATGTCTAGAACCTTTTGGTAAGTT TTACAGTGATGAAACGGAGGATTGGATGTATAGAGGAGCTGTGTATCTTAATGCACCCAACGGAACAACAGCAGGCTTGA ACAGGTCACAATTAGGCCCCATCATTCATGCTAAGTGCAGATCTGAATCTAGTGTGGCTCCATTTAATGATTTTGCGCTG GATGAAGGGGGCACCAGTGAGGAAGGGAGTAAAAGAAAACGAATGCGGCATTGA
Protein sequence (LotjaGi2g1v0457600.7) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEGPTRHQIVMPLPTYVHEYPAHNYRGRTIERESPHHGVDYGLVKKLGREVELSEWQRKQFSGEGPKRFQTSKTTYSLIN GQQRQSPRALIDAFGGDKRLGRNGIDKVLTTSWQNTEEEEFNWGDMSPKLAEHNTNNGYLQSTTGFTTGKPVIVGANAIS SEQDTRKGWSSGSQLPPVDDSSVIAEDAFTSSAYSGVSLGQVSGFQNPINQSQGSGQRIDAWKISSHPSVSTRHPFNIEN KDFNNGNLHQLPNQLAGLLSSNPQNRGQAPQLQFFPSQDPAASQFSGSSFPGHGAARNTHLSNAPPNMAFPLPGQNMVNN SFHLLGAALPPLHPARPPLLPHPYPTPLVSSQQPTVPYSNLINSLVAQGVFSWANPVPAQDSVGIEFNLDILKVHHESAI SALYGDLPRQCRTCGLRFKCQDEHSNHMDWHVTKNRMSKNRKQKPSRKWFVSVRMWLSGAEALGTESAPGFLRTDTVEEK KDDEELAVPADEDQNTCALCLEPFGKFYSDETEDWMYRGAVYLNAPNGTTAGLNRSQLGPIIHAKCRSESSVAPFNDFAL DEGGTSEEGSKRKRMRH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 48 | 179 | 132 | 5.8E-87 | – | |
| PANTHER | 48 | 179 | 132 | 5.8E-87 | – | |
| PANTHER | 256 | 566 | 311 | 5.8E-87 | – | |
| PANTHER | 256 | 566 | 311 | 5.8E-87 | – | |
| MobiDBLite | 278 | 302 | 25 | - | – | |
| ProSitePatterns | 411 | 431 | 21 | - | ||
| MobiDBLite | 557 | 577 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi2g1v0457600.7, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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