Transcript — View — Lotus Base

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LotjaGi2g1v0459100.1

Overview

Field	Value
Gene ID	LotjaGi2g1v0459100
Transcript ID	LotjaGi2g1v0459100.1
Related isoforms 2	LotjaGi2g1v0459100.2 LotjaGi2g1v0459100.3
Lotus japonicus genome version	Gifu v1.2
Description	APO protein; TAIR: AT5G61930.1 APO RNA-binding protein (DUF794); Swiss-Prot: sp\|Q9FH50\|APO3_ARATH APO protein 3, mitochondrial; TrEMBL-Plants: tr\|A0A0S3SUP6\|A0A0S3SUP6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0459100
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr2:95239321..95241846) extracted from Lotus japonicus Gifu genome v1.2.

GGATGACGCAAGCCTTATTGTTGTGCCTGCCTTCTTCCGCTCTTGAACACTCCGGTATCCAAGTTGTATTTCGTTGCATG TCTTCGCTGAAGTTTCAGTTCTTTCCGTGGGTTTGTTTGGTTTCAGTAAAAAACCCAGCCCAGGATCACGCACTCTTGCT CGAGAAGTCATCGCTCGCCCTCCAGTCCACGGTGAGTTAATTCATTGTGATTCAATCTGTCTGTCTCCTTTTTGCTTTCT ATATTTTCATTACTGATTGAAATGTGTGAAAAGCATATATCTCGAATTATATTATATTCTTCAAAATAAAGTAACATTCC ATCTGTCCTTTGGTGGTTTGGGTTATAGGGTTCAGATGCTGAAATGTAATTGGGTGTATGTTTCTCTGTTTTATTTAGCT GATAATTTCGTACTAGTGGCCAGTGGGAGTAGGATAAAGCCAGACCAGGGGAGAGGGAAAGGTTAGTCAGGTTTCAGAAT CAGTTTCTTGTTCTGTATATAAATTTGTCCATTAATTTTTTTCAGTGTATATGTGCCTTTTCTACATGAGAAATGATGCT GCCAAGACATGTTCAAACTGTTCGCTATATGCTTGAGAGACTTATTCCTGTGGCACAGCTTAGAGGTATAAATACACATT TCTGTGTTTGGTACTCAACTCTGTCAGCTTGCAATGAGCTTCCAAGAAACCTCAAAATGTCTGAGAGGAAACCACTGGTG ACAAGTTTTAATGAACTAAAGCGCCAAGCTAGACGCAAGAGAAAGGAGAGACAAAATGTGCATGAGATTCTTTTACAACC TCCTGAAAATGGCTTGTTGGTTAAGCAATTAATTCCTATTGCTCATCAAGTTTATGCTGCCAGATCTGAACTATTGTCCA GTGTTTCAAGACTTGTCAAGCACATTGCTATTTATACATGCAGGTAAGACCATAACCTCTGTATCCTTTATTTCGGTTAT TTGAGCTTTGAGCATGCTGCAAGCTGAACTTCTATTTAAGTATGATACTGTATTCCAACCAGAAGTATTTTTTCCTGTTA TTTTATTTTATCTGGTTTTATTGGAATTGGCAACTTGCAGCTAAGCGATATAATATGATATTTTCAATGTATACTGGGTG TAAAAGGATTTCTTAATGTGAATTGGAGCTATTCTAAGTGGATAATGTATACTGATCTCCTAACTTGAGATTTGGAATGC CTTGCAGCTTATGTGGAGATGTTCATGTTGGTCATCCACCACATAATATTAGAACATGTAATGTTAGAGGAAGCCCATCA AGCAAAGAACATAGTTGGGTCAAAGGAGGTATTGGCCATGTACTGCCACTTGTAGAGTCATTTCATTTGTATGATAGAAT AGGGAGGGCCGTTTCACACAATGAAATGCTTGAAGTGGACCGAATTCCAGCCATCGTTGAATTGTGTATCCAGGCAGGTT TTGACATACCTGAGTACCCTACCAGAAGAAGGGCCTTCCCTGTTTATTGTGTTGCTGGTAGGATAATTGATTTTGAGAAA AGATTTCCAAAAGAAATTTCACTTGGCAAAGATATAGATGCATGTGGGTTTTGGTGTAAGAAGAGATTGAATGAAGACAC CAATTCGTTAGCAATGCATGGTGATGATATTCTAGGTTTATGAAGACAAAATACTTTTTTCTTCTTTTTCTCACTCTCTC TTAGACAAACACACATAGGAAATGCATTACACATTCTTCCTTTGTCAACTTTCTTACTATCTACATGCTTCCTTGCAGCT ATTGCTGTCCGAGGCATGAAAGCCTGGGAGAAAATGTGCACAGGAGCTTCAAAACTTATGGACACATATGCTTTCCAAAC ATGTGGATATTGTCCAGAGGTACAAGTAGGACCTAAAGGTCACAGAGTACGAAATTGTCAAGCTTTCAAACACCAGATGA GGGATGGGCAGCATGCATGGCAGGAGGCTACAATTAATGATTTGGTACCTCCTGTATACGTCTACCACATTGGAGATCAG CAATCCGGGAAGCCTTTGGTACATGAGCTTAAAAGGTACTATGGTATGCTGCCTGCGGTGGTTGAGCTATTTGCACAGGC TGGGGCGACAGTTGAAAAGAATTATGCACATTCAATGAGGGAAGATGTTGTCGTCCCTGAAATGGACGAGGAAAAGTTGG TTGTTTAAATCAATTGGTTGAATGACTTCCTATGAATGGAGGAACCATTTAGATATGGAAGAGGCTAAATATTAAAAATT AAGCTTTAATTTCTTTCAAATAGTAACAAGTTGTTTATGCTGGGAAAGAAGATGAAGGATTTGTAATTTGGTTATTAGGA TAGTAATAGGATGTGAATAAGAAAGAAAATTGGAATAAACAATCTAGTGTTCTGTTGGCAACTTAAGGTGTTGTCTTGAT TATATGAAACACTTCTGTTTGACACGCACCGGAGACCAATAAACTTGGATTCCTTTGTTGAGAACATGTCTTTATCCCTC TCCCAATCTCAGTTGTCACTTAATTTAGTTTCAAGTCAAATATGCT

Download Genomic Sequence

CDS sequence (LotjaGi2g1v0459100.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGATGCTGCCAAGACATGTTCAAACTGTTCGCTATATGCTTGAGAGACTTATTCCTGTGGCACAGCTTAGAGGTATAAA TACACATTTCTGTGTTTGGTACTCAACTCTGTCAGCTTGCAATGAGCTTCCAAGAAACCTCAAAATGTCTGAGAGGAAAC CACTGGTGACAAGTTTTAATGAACTAAAGCGCCAAGCTAGACGCAAGAGAAAGGAGAGACAAAATGTGCATGAGATTCTT TTACAACCTCCTGAAAATGGCTTGTTGGTTAAGCAATTAATTCCTATTGCTCATCAAGTTTATGCTGCCAGATCTGAACT ATTGTCCAGTGTTTCAAGACTTGTCAAGCACATTGCTATTTATACATGCAGCTTATGTGGAGATGTTCATGTTGGTCATC CACCACATAATATTAGAACATGTAATGTTAGAGGAAGCCCATCAAGCAAAGAACATAGTTGGGTCAAAGGAGGTATTGGC CATGTACTGCCACTTGTAGAGTCATTTCATTTGTATGATAGAATAGGGAGGGCCGTTTCACACAATGAAATGCTTGAAGT GGACCGAATTCCAGCCATCGTTGAATTGTGTATCCAGGCAGGTTTTGACATACCTGAGTACCCTACCAGAAGAAGGGCCT TCCCTGTTTATTGTGTTGCTGGTAGGATAATTGATTTTGAGAAAAGATTTCCAAAAGAAATTTCACTTGGCAAAGATATA GATGCATGTGGGTTTTGGTGTAAGAAGAGATTGAATGAAGACACCAATTCGTTAGCAATGCATGGTGATGATATTCTAGC TATTGCTGTCCGAGGCATGAAAGCCTGGGAGAAAATGTGCACAGGAGCTTCAAAACTTATGGACACATATGCTTTCCAAA CATGTGGATATTGTCCAGAGGTACAAGTAGGACCTAAAGGTCACAGAGTACGAAATTGTCAAGCTTTCAAACACCAGATG AGGGATGGGCAGCATGCATGGCAGGAGGCTACAATTAATGATTTGGTACCTCCTGTATACGTCTACCACATTGGAGATCA GCAATCCGGGAAGCCTTTGGTACATGAGCTTAAAAGGTACTATGGTATGCTGCCTGCGGTGGTTGAGCTATTTGCACAGG CTGGGGCGACAGTTGAAAAGAATTATGCACATTCAATGAGGGAAGATGTTGTCGTCCCTGAAATGGACGAGGAAAAGTTG GTTGTTTAA

Download CDS Sequence

Protein sequence (LotjaGi2g1v0459100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MMLPRHVQTVRYMLERLIPVAQLRGINTHFCVWYSTLSACNELPRNLKMSERKPLVTSFNELKRQARRKRKERQNVHEIL LQPPENGLLVKQLIPIAHQVYAARSELLSSVSRLVKHIAIYTCSLCGDVHVGHPPHNIRTCNVRGSPSSKEHSWVKGGIG HVLPLVESFHLYDRIGRAVSHNEMLEVDRIPAIVELCIQAGFDIPEYPTRRRAFPVYCVAGRIIDFEKRFPKEISLGKDI DACGFWCKKRLNEDTNSLAMHGDDILAIAVRGMKAWEKMCTGASKLMDTYAFQTCGYCPEVQVGPKGHRVRNCQAFKHQM RDGQHAWQEATINDLVPPVYVYHIGDQQSGKPLVHELKRYYGMLPAVVELFAQAGATVEKNYAHSMREDVVVPEMDEEKL VV

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Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR10388 View details on PTHR10388 Search for proteins/transripts with this domain View external data on PTHR10388	2	402	401	1.7E-211	–
PANTHER	PTHR10388:SF50 View details on PTHR10388:SF50 Search for proteins/transripts with this domain View external data on PTHR10388:SF50	2	402	401	1.7E-211	–
Pfam	PF05634 View details on PF05634 Search for proteins/transripts with this domain View external data on PF05634	41	225	185	4.2E-62	IPR023342 Show description in modal box View details on IPR023342 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS51499 View details on PS51499 Search for proteins/transripts with this domain View external data on PS51499	122	206	85	22.375	IPR023342 Show description in modal box View details on IPR023342 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF05634 View details on PF05634 Search for proteins/transripts with this domain View external data on PF05634	249	383	135	1.2E-25	IPR023342 Show description in modal box View details on IPR023342 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS51499 View details on PS51499 Search for proteins/transripts with this domain View external data on PS51499	294	380	87	27.012	IPR023342 Show description in modal box View details on IPR023342 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0003723 View details of GO:0003723 AmiGO InterPro QuickGO	Molecular function	RNA binding	Interacting selectively and non-covalently with an RNA molecule or a portion thereof.	Subterm of View details of GO:0003676

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0459100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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