Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0461500 |
| Transcript ID | LotjaGi2g1v0461500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Gamma-tubulin complex component; TAIR: AT3G43610.1 Spc97 / Spc98 family of spindle pole body (SBP) component; Swiss-Prot: sp|G5E8P0|GCP6_MOUSE Gamma-tubulin complex component 6; TrEMBL-Plants: tr|A0A0R0LJU5|A0A0R0LJU5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0461500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:95484427..95486837) extracted from Lotus japonicus Gifu genome v1.2.
TTCTGTACTATTGTTGCTTGTCCTTAAAGATGTCAGATACAATTATGTCAGCAAACTAACCATCAATGTGCTTGAGGAGG CATTTAAGTTGCAAGAACATCTTTTAGCACTGCGGCGGTATCATTTTATGGAGTTAGCAGATTGGGCAGATTTGTTTATC TTGTCTCTTTGGCATCATGTATTCCTTATTTCTGATTCACAATGACTTGCATAATGTTTCATAGCTGAGTTCTTCCTATA GTCTACAATACTGCATGTTTACTCATTCTTTGGTTTACTTGATATCACAGAAGTGGTCTATCACAGAAGCTAATGAGCGA CTTTCAGAAATTCAAGGTCTACTTGAATTATCAATTCAGAAGTCTTCTTGTGAGCAAGACACTTATAAGGATCAGTTGTT TGTGTACATGAAAGGACACGGGAAATTGCCTCTTTCTGCATCTGCTATTGGTACATCCATTCTGCTTTTGAAAGGGGATA ACCCCCACTTGGTATCCAATTTTTACTTTTCATTAAGGCCCGATATTTTGTTTTCACCACCATTGAAAGAAAGGAGAAAA TCGTCATTTCAAATTAACTATGAAGTCTCCCTAAGTCTTGAAGAATTTAAAACAATTGCTAAGCCATTTATATAATTGAA TAAAAGTAAATTTCTGTCGGCATGTGAGTGCCTCTTTTTTAGTAGCTAAGGGAAATGAAGGGATTGCAGGGTGAAGGGCC AGAGTTCAAATCCTGGCGAAGGAACTAATTTACTAACAATTAACAACTAACATTTGCCTATAAAAAAAACTATGCTGATA TGCTCATTTCTTGTATAAATAACAATAATCACAGTGAGAATTACTAACAATTTTGGTTTTATTATTGTCTTGATTGTTGT TATTAATACTACACTACTCAGTTTCATTTTATGTTTGATAATCAGCTCACCGCCTTCTTGGTAGAACGTGAAATTATTAT GTCTCTGATAAGGAATTTGTAAATAATGGCAGGGGTCCGTTCATTTGATTTCTTAGGACTGGGTTACCATGTTGATTGGC CACTCTGTATTGTCTTGACACCTCCTGCATTAAAAATATATGCTGATATATTCAGCTTTTTGATACAAGTGAAGCTTGCC ATATTTTCATTGACTGATGTGTGGTGCTCATTAAAGGTGAGGTTTCTTGCAATTGTTCCCTTTTTTTCCTGCTGTTTATT ATTATTCACCAGGCATTTAATTATCTTGTATTACATCAATATTCTTTCTTCAGTTTCTGTCTATGAAATACTCAAGAAGA TTTTCACCAATCTTATTTTTACTGTGATAAACATCTACTTATCAAATCATTATGCCATATTCTGATTGAGTCTTTCTTTT GTAGTTAATCTGTTTTCTCTTTCTATTATGTACACCTACACACATGCATACATGGATAAATAGATATCAGATATATACCT ATTCTTTTTTTTTCTATCAGCTTTTGATTTCCAAACTAAGAATAAATAACCATTTAACTAGTAAATCGTGTCCAAAGAGT TGTTGATAAGTAAGTATTTATTGATTATAACCATTTTTTCTGAACTGGGAATATTTTTATCATGAATAATATTTTGTAAT TTCCCCAGGGAAAAAATAAAACTATTCTTTTTTGTTCTCTTTTACCTGCAAAGTGCTTTGTATGTCTCTGTATTTTATCT CGGATAATTTTTGTTAGAATGTTTTAGAGCCTGCAATTGTAATTTTGTTACATTCTGACATAATGTGATACCTCAATTTG CTTCTGTTGCTCAGAGTTGCATTTACATTCTGAATTTTCAAGAAAATCTAAGGATTTTTGGTTGTGTAATAATACTTATT TTCTTTAAATTTTGGTGAACAGGATATGGTGCATACAACCGGTAAGAATCTAGATTCTGAACTACAGGAGTGTGGGGCAG GGCATCTTAATATATTGATAAAGATGAGGTATATTCTGAAAGTTTGGTTTTTTATTTTCTTTTGAATGGCTGGATACATT GTGTGAATTTCATATGGTAGGCCTTCCTTTGGGATCCACTAATCATTTTCATGGATAGGAAGGACTTTGGAGGTTTAGAT CATGGGGTCTGGGTGGGAACACTGCCTCTGATGACTATTAATCAATATCGGAAATCTTAGGGATTCAACAGTTTGCAATT TTTTTCCCATTAACCATGAAGGGGAATTCAATGAGCACTACTTTAGTAGTTCCTTGAATAAATTTTAAATATTGAGGACA AGCTTCTTCTATAGTATACGCATGTTTTTACTTCTAAACATCCTTTACTCTACTTTCAATGACAGGCACCAGATCAGCCA TTTCGTATCTACTTTGCAGCAGTATGTAGAGTCACAATTATCTCATGTGTCATGGTGCAGGTTTCTTCATTCTCTTCAGC ATAAGGTTTGA
CDS sequence (LotjaGi2g1v0461500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGTTAGCAGATTGGGCAGATTTGTTTATCTTGTCTCTTTGGCATCATAAGTGGTCTATCACAGAAGCTAATGAGCG ACTTTCAGAAATTCAAGGTCTACTTGAATTATCAATTCAGAAGTCTTCTTGTGAGCAAGACACTTATAAGGATCAGTTGT TTGTGTACATGAAAGGACACGGGAAATTGCCTCTTTCTGCATCTGCTATTGGGGTCCGTTCATTTGATTTCTTAGGACTG GGTTACCATGTTGATTGGCCACTCTGTATTGTCTTGACACCTCCTGCATTAAAAATATATGCTGATATATTCAGCTTTTT GATACAAGTGAAGCTTGCCATATTTTCATTGACTGATGTGTGGTGCTCATTAAAGGATATGGTGCATACAACCGGTAAGA ATCTAGATTCTGAACTACAGGAGTGTGGGGCAGGGCATCTTAATATATTGATAAAGATGAGGCACCAGATCAGCCATTTC GTATCTACTTTGCAGCAGTATGTAGAGTCACAATTATCTCATGTGTCATGGTGCAGGTTTCTTCATTCTCTTCAGCATAA GGTTTGA
Protein sequence (LotjaGi2g1v0461500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MELADWADLFILSLWHHKWSITEANERLSEIQGLLELSIQKSSCEQDTYKDQLFVYMKGHGKLPLSASAIGVRSFDFLGL GYHVDWPLCIVLTPPALKIYADIFSFLIQVKLAIFSLTDVWCSLKDMVHTTGKNLDSELQECGAGHLNILIKMRHQISHF VSTLQQYVESQLSHVSWCRFLHSLQHKV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 186 | 186 | 1.1E-60 | – | |
| PANTHER | 1 | 186 | 186 | 1.1E-60 | ||
| Gene3D | 2 | 188 | 187 | 4.2E-31 | ||
| Pfam | 3 | 187 | 185 | 2.0E-33 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Microtubule cytoskeleton organization | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and their associated proteins. | ||
| Cellular component | Spindle pole | Either of the ends of a spindle, where spindle microtubules are organized; usually contains a microtubule organizing center and accessory molecules, spindle microtubules and astral microtubules. | ||
| Cellular component | Microtubule organizing center | An intracellular structure that can catalyze gamma-tubulin-dependent microtubule nucleation and that can anchor microtubules by interacting with their minus ends, plus ends or sides. | ||
| Biological process | Microtubule nucleation | The process in which tubulin alpha-beta heterodimers begin aggregation to form an oligomeric tubulin structure (a microtubule seed). Microtubule nucleation is the initiating step in the formation of a microtubule in the absence of any existing microtubules ('de novo' microtubule formation). | ||
| Molecular function | Gamma-tubulin binding | Interacting selectively and non-covalently with the microtubule constituent protein gamma-tubulin. |
Expression pattern of LotjaGi2g1v0461500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…