Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0004100 |
| Transcript ID | LotjaGi3g1v0004100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ACT domain-containing protein; TAIR: AT1G16880.1 uridylyltransferase-like protein; Swiss-Prot: sp|Q9FZ47|ACR11_ARATH ACT domain-containing protein ACR11; TrEMBL-Plants: tr|I3T0H5|I3T0H5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0004100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:526490..530848) extracted from Lotus japonicus Gifu genome v1.2.
GACATTTGATTCACAAAAATGTAAATTCTCCACCAAACGCGTCGCTATTTGTCCAAATGTATAAAGGGCCAACTGGATTA GGAGTGGACGTCAGAGATTTATTCAGAGAGAGATAAAGAGATGATTGATGAATGAATGAACTCTTTTGCTTCGCCCATTC TTCTGTTCTCTCTCTCTGCCTTTGCTAACTGGTGTCATGTTATTTGAATTCTTCTGTTTCTTTTTCTTATCTGTCAAGAT ATAAATTTTCTCTCTTTTCTCAATCTCCTTTACCTTCCAATATGGCTGTGGCTATGGCTGCTTGCAGCCTTGGACTTCAC TTGTGTGCTGATAACAGCTTGAGAGCTTTGGAAAAAACCATTTGGGGTGCCCCTGTCTTGAAAGTCTCATCTATCTCTGA TACTACCAAACCATGTTACATTCTTCACAAAACAAGGTATGGTAACAAGTGTTTCTGGCTGCTTGTGTATTGGATAATTC TAGCATCTACTATTTTGTCTTTTTTTCTTTCTTTCTTGTATTCAGTTTCTGCTTTACAATTTAGTTAGTGCAGTTTGAAA ATCCTTCTACAATTTATTCTACAGCCAGAATCAATTCTAAGGAAAAACTTGTGTAGCTTCTGGGTTTCATAATTAATTCT TAACAAAGAGATCCTGATCAAAACATGCTATTAATCCAGCTTGACTTGTTAAAAATATAATATAAGACTAGAGACTAAAC TAGAAAAAAGGTACGCGGACAATAATTTAACATATTATGCAATATCAACAATGGTTAATTGAATGACACTATGTAAGATT TTTAAGGGTGTAATTAGAGTATTTTAGTACTATTTTGTTAAGCAGTTTTTTTTTTCTTGGGAGGTGACTGCCCTGTTTTG AGTATTCCTATTTCTGTCCCTATGTAAGACCATTTATGTTTCTTCACCCAAAATGATGTGTTCTTTCTCAGTTAATTGTA TGTACCATTTTGTCAGATTATCATCTTCAAGGATTACAATCATCCCACGAGCAACAGCTGTTACTGATGTGGAGGTACTT AGCAAAGCAAAACGCTTAGTAGCATGTTTGAGTGAACATGCTTTAATTGTGAAACCAAACAGGCTATAAAATGGCTGTAA TTTATAGCAAGTGTATAGACAGTACACTTGTGCATGTTGACTGTCCTCACTGAAACATTTGCTTTGAACTTTCTCTGTGG CGAACAGGGTGGAAATCAAGATGAGACTGATACTGTTCCAACTCCAGTAGTTATAATTGATCAAGATTCTGATACAGATG CAACTGTGGTGGAGATAACCTTTGGTGATCGCCTGGGGGCTCTTCTTGACACTGTAAGCCATTCCCTAAATAAATTTGTG CTCTTCTTGTACCTATCTAGAACTTCACACTTTACACACATCCATTTTTGTATAGTTTTTAGTAAAGAATTTATGGTTAG CTGATAATGAATTTTAATGATTGAAACAAAAAATTGGATTTTACTTGGGTTGCAGATGAATGCATTGAAGAACTTAGGGC TCAATGTTGTCAAGGCAAATGTCTATCTGGACTCCTCTGGCAAGCACAACAAGTTCGCCATCACAAAAGCGTAAGTAATA CGTTTTATTCAAATATGATGTGCTAGAAATATATATTTTTTTTTTCTTGTATATCCTACACTTTTACCTTGGCTTTTCTG TATTACGACGGCTGAAGTATGCTAACGAGTAGTTAATAATGTTCATCTGTTGTCATTGGGCTAAGCTAAATGTCCATTTA GATCAGCGTTAATAGAATTGATTGTGAATAAAACTATGGTAAAAGTGGATACATTTATGAGAAAAGTCATTTATGTAGGG CGTGAAATTCAATTGTGAAATCTCACAATTGACTATGGCAACCATAGAAACTAAGGATTTGTAGCTTCATCTCGTAATTG AATTAGGAGCAAGAAGCAATTCTGAAAAGTAATCTCCAAACACGGCATTGATTCTGATAGTTGAACCAACTCCAACTCTT GCAATCGTGAAACTAAACAAACTATAAGTTAGTTTCTCAATCATTCAATTAGGCCCTACTCCTCAGAATCTGGAAGACTT CTAAAGTAGGGTTCCACTAGGGCTTTGAGCTTATGATCTCTTGTAATGTTTGCATTGCATTAGACTTTTCTAAAACTGGC CTCTGCAATTACATACCACTTAGTTTAGCACAATAAAATTTGCTGGGTTCCTTTTCCCCGTTCAAAGTGACAATTATATT ATGGATCAAGTTTTTAATTATATTCTCTACTCAATCATTTGGATATGCTTGTGGTGCTTTTGTTTGCAGTGATACTGGTA GAAAGGTGGATGATCCAGAGTTGTTAGAGGCAATCCGAATGACAATTTTAAATAACATGATTCAGTATCACCCGGTATGC TTACCAACTATCCTTCTTCTCTTATTTTGAAGAATGATTTGGTTAGATTCCATCAGCGATTTCTTTGCTTTTTACATGTT TCAAACTGGTTGTCAAGGAATCAAGCGCTCAGTTAGCTCTAGGAGCAGCTTTTGGACTTGTTCCTCCAAAGGAGCAGGTA ATGAATACTTACACGTTGAACTTTTAGTTGTAAACGTTAAATTGTCATTTTTTGTTTTTCTGAAACTTTCAGTCAGTTAA TATATATTCCAGGCTTTAACCAAAAAGAAAAAGAAAAGCAAGCTCCTTGTTATACCAAAGTAAACTGAAATGTTTAATAA TACTTATTGTATCATAATTAATGTGATGAACACCTAATATCTGTGGCCTCAATTGCTTTGTGTTGCTTAGCATGCACCTT ATTGGTGAAATCTGGTTTATATTTGTCAAAATATTTCAGGTTGATGTGGACATAGCAACCCACTTAACCATCTCTGATGA CGGCCCGGATCGAAGGTGAGGCAAACAAGTCGTTTTTGCTTAACACAACTGATATTCTGATCCAAAATGAAGAAAATTAC TTATAGCGTGTTCAATTCTACGGTGAGAAGCCTCATAATCACTTCTGGGAGAAGCTATAGAGTGTATCTTCTGGGACTTC CGTGCTTTGAATTGTATATCCACCAACAATCCAAACACACTACTAGTTGAAATTCGCATGATATTTGTCTTAGCCACAAG ACAACCATGTTCTCAGCATGAGCAATACCACCTTTGAATTGACAAATGCTGCTTTTAGGAAAATAACCACATGTTATGGT ATGCTGTTGCTTACTTGCTTACCTGTTTTTCCTGTTTCAGTTTGCTGTATGTGGAGACAGCTGATCGCCCTGGATTACTG CTGGATCTTGTACAGATTATTACTGATATTAATATTGCAGTTGAATCCGGAGAATTTGACACTGAGGTAAGCTACCTGTT TGGATGCAAACTTACGAGCACTTATTGAAGCTTATTTAGTGCATTTTCTAGTAGATAAGCTCCAATAAGCCATATCCAAA CGGGAGCCAAAAAGTTTGCATGTTTATTTTTATTAGTCCTAATCATTCAAACAGTGCAAATATCTATATACTTAAAGCAA GTTATGTATTTCTTTAGTCACATTTGAAAGTTTTGTTGTAAAACTTAGGGACTCTTGGCAAAGGCAAAGTTTCATGTTAG CTACAAGGGTAAAGCCATCATCAAGCCTCTACAAGAGGTTATCTTCTACAACTTTTTAAAACAGTGAGAAACCAAGAGTG TGTGATGTGAGAAAGACCCTTCAATTTCTGAACACTGAACTAATTACAATTCATCTCTACCATTTGGCAGGTTCTTGCTA ACAGCTTGAGATATTACTTGAGGCGACCTTCAACTGAGGAATCCAGTTTTTAAGAGGAATCTATTGCAAGATACAATGAA GAGTCCACATTTTATTTTCTTCTGGAATATCACTACAATGAAATTGCAGGATGCATGTATTTTTTCCCCTCATTCAAAGG ACAAATATAGAATATAACTCAACCCAAAGTCCAAGTCCATTAACTCAAAATTTGATATACTTGGATAGCATTGTAAAGTG ACCACGGTCAATTATAAAATCAAAGGGACATTTCTTAAGTGGACCCGTACAAATCCTTTTATGAATAGAACAAGGATTAC ACAAAAAGTTCAGTAATGGATAAGATGGCAAAAGAGTTATAAATTTGATTAACATCCTTTTGAGATTTATAACACAGTCA ATACTTAAGTACATTAGCACTGACCTACTCACAGCCTAGGAACTCAATAATGAGTTCTCCCTAATCTAGCTTGTTTGGTT CTGTGATAACAAACCTGATTATCACTTTTGAAAAGAAGTTACAAAGTGTATCTTATATATTTAAGGTGTTTTGAATTGTG GAATTAGTAATTGTTTTACTTATGGAACTTGGGCTCTGG
CDS sequence (LotjaGi3g1v0004100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGTGGCTATGGCTGCTTGCAGCCTTGGACTTCACTTGTGTGCTGATAACAGCTTGAGAGCTTTGGAAAAAACCAT TTGGGGTGCCCCTGTCTTGAAAGTCTCATCTATCTCTGATACTACCAAACCATGTTACATTCTTCACAAAACAAGATTAT CATCTTCAAGGATTACAATCATCCCACGAGCAACAGCTGTTACTGATGTGGAGGGTGGAAATCAAGATGAGACTGATACT GTTCCAACTCCAGTAGTTATAATTGATCAAGATTCTGATACAGATGCAACTGTGGTGGAGATAACCTTTGGTGATCGCCT GGGGGCTCTTCTTGACACTATGAATGCATTGAAGAACTTAGGGCTCAATGTTGTCAAGGCAAATGTCTATCTGGACTCCT CTGGCAAGCACAACAAGTTCGCCATCACAAAAGCTGATACTGGTAGAAAGGTGGATGATCCAGAGTTGTTAGAGGCAATC CGAATGACAATTTTAAATAACATGATTCAGTATCACCCGGAATCAAGCGCTCAGTTAGCTCTAGGAGCAGCTTTTGGACT TGTTCCTCCAAAGGAGCAGGTTGATGTGGACATAGCAACCCACTTAACCATCTCTGATGACGGCCCGGATCGAAGTTTGC TGTATGTGGAGACAGCTGATCGCCCTGGATTACTGCTGGATCTTGTACAGATTATTACTGATATTAATATTGCAGTTGAA TCCGGAGAATTTGACACTGAGGGACTCTTGGCAAAGGCAAAGTTTCATGTTAGCTACAAGGGTAAAGCCATCATCAAGCC TCTACAAGAGGTTCTTGCTAACAGCTTGAGATATTACTTGAGGCGACCTTCAACTGAGGAATCCAGTTTTTAA
Protein sequence (LotjaGi3g1v0004100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAVAMAACSLGLHLCADNSLRALEKTIWGAPVLKVSSISDTTKPCYILHKTRLSSSRITIIPRATAVTDVEGGNQDETDT VPTPVVIIDQDSDTDATVVEITFGDRLGALLDTMNALKNLGLNVVKANVYLDSSGKHNKFAITKADTGRKVDDPELLEAI RMTILNNMIQYHPESSAQLALGAAFGLVPPKEQVDVDIATHLTISDDGPDRSLLYVETADRPGLLLDLVQIITDINIAVE SGEFDTEGLLAKAKFHVSYKGKAIIKPLQEVLANSLRYYLRRPSTEESSF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 22 | 22 | - | – | |
| Phobius | 1 | 2 | 2 | - | – | |
| Phobius | 3 | 14 | 12 | - | – | |
| Phobius | 15 | 22 | 8 | - | – | |
| Phobius | 23 | 290 | 268 | - | – | |
| PANTHER | 39 | 290 | 252 | 2.5E-153 | – | |
| PANTHER | 39 | 290 | 252 | 2.5E-153 | ||
| ProSiteProfiles | 98 | 178 | 81 | 8.512 | ||
| SUPERFAMILY | 210 | 274 | 65 | 5.64E-6 | – | |
| ProSiteProfiles | 213 | 284 | 72 | 7.235 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0004100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…