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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0005600 |
| Transcript ID | LotjaGi3g1v0005600.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box/LRR protein; TAIR: AT1G80570.2 RNI-like superfamily protein; Swiss-Prot: sp|Q3EC97|FBL14_ARATH F-box/LRR-repeat protein 14; TrEMBL-Plants: tr|A0A1J7HBP2|A0A1J7HBP2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0005600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:721796..723279) extracted from Lotus japonicus Gifu genome v1.2.
GTTTGTATGAGTGTGAGATTGTGAATTGAAATTGAGGATTTTATGTTGATGTTTTGGGCAGAGGAGAATAGAGATTCTGA ATGGATAACATACCTGAGCATCTAGTATGGGAGATATTGAGTCGGATAAAGAAAACCAGTGACAGAAATTCGGTTTCCTT AGTTTGTAAACGACTTTACAATTTGGATAATGGACAGAGGAATTCTCTTAAGGTTGGATGTGGGATGGATCCTGCAGATG AAGCTTTGACCTGTTTATGCACTAGGTTTCTCAACTTGTCGAAAGTCGAGATCACATACTCTGGTTGGATGTCAAAGCTA GGGAGACAATTGGATGACAAGGGTCTTCTCATTCTTGCGAATCACTGCCCTGTGCTCTCTGATCTTTCCTTGAGCTACTG CACTTTTATCACCGATGTCGGTCTCCGGCACTTGGCGTCTTCTTCCAAATTGTCGTCTTTGAGGTTGAATTTCTCACCGA GAATCACTGGTTGTGGCATATTGTCTCTTGTTGTTGGTTGCAAAAACCTCACCAGGCTTCACCTTATCAGATGCCTCAAT GTGAGCAGTGTGGAGTGGCTTGAGTACCTTGGGCGGCTTGGGACGCTTGAGGATCTCTCGATTAAGAACTGCAGAGCTAT CGGTGAAGGTGACTTGATTAAGCTAGGCCCTGGTTGGCAAAAGCTCAAAAGGTTGCAATTTGAAGTCGATGCTAATTACC GGTACATGAAAGTTTATGATCGGTTATCTGTAGATAGGTGGCAAAAGCAGCCTGTCCCGTGTGAAAATGTGCTCGAGCTA AGCCTGGTGAATTGCATCATCAGTCCTGGGAGAGGGCTTGCTTGTGTAATGGGGAAGTGCAAGAACCTGGAAAAAATCCA CCTAGACATGTGTGTTGGGGTTAGGGACTTTGACATTATTTGTTTGTCGAAAAGATCAAGTGGCCTTCGATCAGTTTCAT TTAGAGTTCCATCTGATTTTTCACTTCCTTCCTTAATGAATAATCCATTGAGGTTAACAGATGAGAGTCTGAAAGCCTTA GCTCAAAACTGCTCGAAGCTTGAATCAGTGAGGATATCTTTCTCTGATGGGGAGTTCCCCTCATCATCCTCATTCACATT AAGTGGAATACTTTGTTTGATTCAGAAGTGTCCAGTTCGTGAGCTCTCTCTTGATCATGTTTATTCCTTCAATGATGTTG GAATGGAAGCTCTTTGCGCGGCAGAATATCTTGAATCTCTTGAACTTGTGAGGTGCCAAGAGATTAGTGATGAGGGGCTG CAGCTTGTGAGCCAGTTTCATCGGCTATGTAGTTTAAGGTTAAGCAAGTGTTTGGGGATATCAGATGATGGATTAAAGCC ACTTGTTGGATCATTCAAGTTAGATTTCTTGGCCGTTGAAGATTGTCCTCAGATTTCTGAAAGAGGTGTCCAAGGAGCTG CAAAGTCTGTATCTTTCAGGCAAGATTTATCGTGGATGTACTAA
CDS sequence (LotjaGi3g1v0005600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATAACATACCTGAGCATCTAGTATGGGAGATATTGAGTCGGATAAAGAAAACCAGTGACAGAAATTCGGTTTCCTT AGTTTGTAAACGACTTTACAATTTGGATAATGGACAGAGGAATTCTCTTAAGGTTGGATGTGGGATGGATCCTGCAGATG AAGCTTTGACCTGTTTATGCACTAGGTTTCTCAACTTGTCGAAAGTCGAGATCACATACTCTGGTTGGATGTCAAAGCTA GGGAGACAATTGGATGACAAGGGTCTTCTCATTCTTGCGAATCACTGCCCTGTGCTCTCTGATCTTTCCTTGAGCTACTG CACTTTTATCACCGATGTCGGTCTCCGGCACTTGGCGTCTTCTTCCAAATTGTCGTCTTTGAGGTTGAATTTCTCACCGA GAATCACTGGTTGTGGCATATTGTCTCTTGTTGTTGGTTGCAAAAACCTCACCAGGCTTCACCTTATCAGATGCCTCAAT GTGAGCAGTGTGGAGTGGCTTGAGTACCTTGGGCGGCTTGGGACGCTTGAGGATCTCTCGATTAAGAACTGCAGAGCTAT CGGTGAAGGTGACTTGATTAAGCTAGGCCCTGGTTGGCAAAAGCTCAAAAGGTTGCAATTTGAAGTCGATGCTAATTACC GGTACATGAAAGTTTATGATCGGTTATCTGTAGATAGGTGGCAAAAGCAGCCTGTCCCGTGTGAAAATGTGCTCGAGCTA AGCCTGGTGAATTGCATCATCAGTCCTGGGAGAGGGCTTGCTTGTGTAATGGGGAAGTGCAAGAACCTGGAAAAAATCCA CCTAGACATGTGTGTTGGGGTTAGGGACTTTGACATTATTTGTTTGTCGAAAAGATCAAGTGGCCTTCGATCAGTTTCAT TTAGAGTTCCATCTGATTTTTCACTTCCTTCCTTAATGAATAATCCATTGAGGTTAACAGATGAGAGTCTGAAAGCCTTA GCTCAAAACTGCTCGAAGCTTGAATCAGTGAGGATATCTTTCTCTGATGGGGAGTTCCCCTCATCATCCTCATTCACATT AAGTGGAATACTTTGTTTGATTCAGAAGTGTCCAGTTCGTGAGCTCTCTCTTGATCATGTTTATTCCTTCAATGATGTTG GAATGGAAGCTCTTTGCGCGGCAGAATATCTTGAATCTCTTGAACTTGTGAGGTGCCAAGAGATTAGTGATGAGGGGCTG CAGCTTGTGAGCCAGTTTCATCGGCTATGTAGTTTAAGGTTAAGCAAGTGTTTGGGGATATCAGATGATGGATTAAAGCC ACTTGTTGGATCATTCAAGTTAGATTTCTTGGCCGTTGAAGATTGTCCTCAGATTTCTGAAAGAGGTGTCCAAGGAGCTG CAAAGTCTGTATCTTTCAGGCAAGATTTATCGTGGATGTACTAA
Protein sequence (LotjaGi3g1v0005600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDNIPEHLVWEILSRIKKTSDRNSVSLVCKRLYNLDNGQRNSLKVGCGMDPADEALTCLCTRFLNLSKVEITYSGWMSKL GRQLDDKGLLILANHCPVLSDLSLSYCTFITDVGLRHLASSSKLSSLRLNFSPRITGCGILSLVVGCKNLTRLHLIRCLN VSSVEWLEYLGRLGTLEDLSIKNCRAIGEGDLIKLGPGWQKLKRLQFEVDANYRYMKVYDRLSVDRWQKQPVPCENVLEL SLVNCIISPGRGLACVMGKCKNLEKIHLDMCVGVRDFDIICLSKRSSGLRSVSFRVPSDFSLPSLMNNPLRLTDESLKAL AQNCSKLESVRISFSDGEFPSSSSFTLSGILCLIQKCPVRELSLDHVYSFNDVGMEALCAAEYLESLELVRCQEISDEGL QLVSQFHRLCSLRLSKCLGISDDGLKPLVGSFKLDFLAVEDCPQISERGVQGAAKSVSFRQDLSWMY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 461 | 461 | 4.7E-181 | – | |
| PANTHER | 1 | 461 | 461 | 4.7E-181 | – | |
| Gene3D | 1 | 40 | 40 | 1.1E-6 | – | |
| SUPERFAMILY | 1 | 36 | 36 | 9.29E-5 | ||
| Pfam | 3 | 40 | 38 | 1.1E-8 | ||
| Gene3D | 53 | 166 | 114 | 4.2E-13 | ||
| SUPERFAMILY | 62 | 446 | 385 | 1.41E-23 | – | |
| Pfam | 95 | 119 | 25 | 0.097 | ||
| SMART | 96 | 121 | 26 | 2.8E-6 | ||
| SMART | 147 | 173 | 27 | 71.0 | ||
| Gene3D | 207 | 339 | 133 | 1.2E-7 | ||
| SMART | 260 | 285 | 26 | 19.0 | ||
| Gene3D | 340 | 456 | 117 | 7.2E-16 | ||
| SMART | 381 | 406 | 26 | 0.62 | ||
| Pfam | 383 | 402 | 20 | 0.33 | ||
| SMART | 431 | 456 | 26 | 140.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0005600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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