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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0006500 |
| Transcript ID | LotjaGi3g1v0006500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nodulin-like / Major Facilitator Superfamily protein; TAIR: AT1G80530.1 Major facilitator superfamily protein; Swiss-Prot: sp|F4I9E1|NFD4_ARATH Protein NUCLEAR FUSION DEFECTIVE 4; TrEMBL-Plants: tr|A0A151SPN2|A0A151SPN2_CAJCA Inner membrane protein yhjX; Found in the gene: LotjaGi3g1v0006500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:806628..810507) extracted from Lotus japonicus Gifu genome v1.2.
CTGAAATATGTACAAGTTCAACCTGCAAATTGGGAAGTTAGATTTGGACCGTTTGGTAATACTGACAGTTGAGCGAGAAT GTGTTTGAAGTAACTGAAAGCATGACTTGAAAACTACTCACAACTAGAATGGAAAAAATGCAAAACACCTTGAGAGAAAC TTGGAATTAGCTATGATCAACTAAAATCGTTGGACTTGAATATCTTTGACAATGCCCAAGTTGGTTCTAAAAGCTGGGAG CAGACCTCCATGGGTGGGTCTTGCAGCTGCAGTTTGGGTTCAAATAGCTGCTGGCAATGTCTACAACTTTCCCCTCTACT CTTCTGCTCTCAAATCCGTGTTGGGTCTCAACCAGCAGCAGGTGTCTTTTCTCGGAGTGGCTAATGATGTTGGGGAGAGT GTGAGCCTGCTTCCTGGTCTTGCTAGCAATAAGTTCCCACCTTGGGCTTTGCTTCTTGTTGGTTCTGTTCTTTCTTTCTT GGGTTATGGCCTTATCTGGCTTGCTGTTACCCAAACTGTTTCCAGCCTTCCCTATGTGGTGGTAAATCACCCTTTCTCTC TGCTCTCTCCAATTTTTTAGCTGTGTGTGTGGAAACTCATGTTTTTAAGTTTGGAGAAGAAGTGATTCTGAAATAAACTA TTTGGGTGCGTTTTGGTAAATTAGTTTATTGCAGGTTTGGGAAATCATTCTAGGATTGATTCAAAAGTCAAAATCAATTC TAATGAGAAGCTTATGTGGGTTGCTTCTGGGTGTTAGAATTTATTCTGATAAAAAGAGAAGTTGATTTAAGCGTCTGTAA GCGCTTATTCATAATCTAATTTTAGAATCTTATTAAAATAAGTCCAAAGAGCTTTATAGCTTGATATAAGCACTTAATTA TAACTTAATATCAGGACCTTATGAAAATAAGTTCAAAGCCGTTCATAGGTAAATATATGTGCTTATTCAGAAACTAATCT CATCAGCTTAATAAGCTCAAAACAACGTGTAAGTAGGTCATAAACTATAATGTTTGGTTGCACGTTTAGACCCCAAAATC ACGTTAACTCAGAAGCTACAATATGGAGTGTGTGTCCAACACATAAGTTGTTCAGATTAGATTATGAATAAGAACTTATA CTTACCTAAAGGAATGATTTTGAAGCTTCAATTCAGCTGTTTAGTTAATTCTTAATAGGTTTTGCTTTTGTCTCATTTTT TCACCTATATGAAGGTTTCTGTTTACTGGTTCAGTTCATCATCCTGCCATATATGCTTCTTTTCTTACATGCATGAATTT CTGATCTCTTCCATTCTGTTGACTTGGCAGCTATGGCTCGCTCTTGCTGTTGCCACTAACAGCGGTGCATGGTTTGGCAC GGCCGTGCTTGTTACCAACATGAGGAACTTTCCTCTCAGTAGAGGCACCATCTCTGGCATTCTCAAAGGTTATGTGGGGA TTAGTGCTGCAGTGTATACATTAATATATAGCACACTGCTTAAAGGGTCTGCTTCTAAATTACTCTTGTTCCTAGCAATC GGGGTCTCTATTGTGTGTTTAGTTATGATGTACTTCATTAGGCCTTGCACTCCTCCTTCAGGAGAAGACTCTTCAGTGCA TGTCCATTTTATTTATACCCAAGCTGCAAGTGTTTTACTTGCCTCCTATCTTGTTACAACCACAGTAGCATGTGACATTG TTTCCATAAGTGATTCTGTTTCCTACATCCTAGTTGCCATAATGGTTATACTTCTGATGACTCCCCTTGCAATTCCTGTT AAAATGACACTATTTCCTTCCGATGCAAAGAACAAAGTTCCAACGGTTAGTTCCTCAGATCAGTTAGATGATGTTTCAAT GCAGACAAGTCCATTGTTGACACCATCTTCTTCAACTGCATACCTTGAAAGTTTTCATGAAAGTGAGGATACTTCAGATG TTGAGACTCTTATTGCAGAGGGGGAAGGAGCAGTTAGAAAGAAAAGGAGGCCTAAAAGAGGAGATGATTTCAAGTTTTTT GAAGCCTTGGTCAAGGCAGATTTCTGGCTTCTTTGGTTTTCTTACTTTCTTGGAGTAGGCTCAGGAGTAACAGTTCTCAA TAATTTAGCTCAAATTGGAGTTGCTTTGGGAGTAGAAGATACCAGCATATTGCTGTCTGTTTTCAGCTTTTGCAACTTTA TAGGGCGTCTTGGTGCTGGCATTGTTTCTGAACACTTTGTTAGGTAATTTATTTAAATTGTCATAAACTAAACAACAAGC AAAAGATGATTGTTACCGTGTTTGATTCTGCAGTAAGAAATCTTGTAATCACTTCTGGGGAGAAGCTTCAAAATGTAACT TCTGGAGTACTGTGCTTTGGATTCTGTGGCCACCGCCAGCCCAAACACACTATATTTTTTAATCCTCATCATACACCTTT AAGTAGTTTCTAACTTAGCATTGATCTTATATGACATGGACATGGTTGTTCTATCCAACACACTTAAAAATAGTTTTCTA GTTCCCACTGAAAACTTTCTTATTTATGAAGTGAATTTGTTTTGATGTTAGCTTCTTAATGCAATTTATATTGTCTTGTG GTAACTGTGATTGTAACTCTCTATGTTGTGTCATAACTGGTCCTAACTCCTAAGCCCGCCTAAAGGAGGAAGGTTGTGTT AGGCTTGCGGCAGCCAATGTAAAACTGGCCGTATCTTATATATAGATCAAGTGATTTACATAGCAGAACACAGTGTATGT TTGGAAAACCTTCTGCTATTGATTCTAAAGACATTATCAATTCCATAGAGAAGATTTGCGAATAGTTTCTGGGTGACATA ATAGATTTTGAGGAAAAATAAGTTGATCCAAACATTGCTACTGTGGGATAAGACTTTTGTTATTGTTGTAGTTGTGATTA TCTTCTCGGTTTGTGCATATATTAATGAGATTATCATCATGATGGCAGGTTGGTAACACTGCCAAGGACATTTTGGATGA CAAGTACACAAATCATTATGATCATAGCATTTTTACTTTATGCTTCAGCTCTGGATGGCACTCTTTATGCTGCAACGGCT GTGCTTGGGATCTGCTATGGGGTTCAATATTCTATAATGTTTCCAACTGTCTCAGAGCTTTTTGGTTTGAAGCACTTTGG TGTTATTAGTAGCTTCATTATGCTAGGCAATCCGGTTGGTGCCCTTCTTTTCTCTGTTTTCCTTGCTGGCAATGTGTATG ACACAGAAGCTGCAAAGCAAGGAAACTCCACCTGCTATGGCGCAGATTGCTTCAGGCTCACCTTTCTTGTTTTGGCTGGT GCCTGTGGACTTGGTACCATCTTGAGCATCATCTTGACAGTTAGAATACGACCGGTATATCAAATGTTGTATGCAGGGGG TTCATTTCGTCTGTCGCGGACTTCAAACCACTGATAGCATGTTTGGTTTCATGTTTGCACAGAGTCCAATGAATATTTAC TACTTATGAGATTGGAAAGATTATAGGTGATGCTTGGTACAAGATTTATCAAATATCTTGAGCTATTCTTCAATGAGCAT ATAGCAAACACTCTAAGCATATTTATGGCTTTGATGTGTTATTTTGGCTTATATGGGATACAATTATGGGAAATTGTCTA CTCTTTTTGTGATCTTCAGAATGTGGTCAGGGTCTTTTGGAGATAGATTTGTGAACTTCCCAATATTTAAACAATTTTTG TTGTGTCATACCATGATGCTATATTGGAAATTATAGGTGATGCTTTACATTCCCTAAAATTTCCCCTAGTTTCTTCAGGA TCTTGTATATAAATTGAAATTGCTAAAGGGTTCTCTCATGGCATATTTAAGTGTTTTTGGTTTTATCCCCTAGAAATTAA CTATGATGCAGTTCCTTAGTTTTTTTGGTACAGTGATCTA
CDS sequence (LotjaGi3g1v0006500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCCAAGTTGGTTCTAAAAGCTGGGAGCAGACCTCCATGGGTGGGTCTTGCAGCTGCAGTTTGGGTTCAAATAGCTGC TGGCAATGTCTACAACTTTCCCCTCTACTCTTCTGCTCTCAAATCCGTGTTGGGTCTCAACCAGCAGCAGGTGTCTTTTC TCGGAGTGGCTAATGATGTTGGGGAGAGTGTGAGCCTGCTTCCTGGTCTTGCTAGCAATAAGTTCCCACCTTGGGCTTTG CTTCTTGTTGGTTCTGTTCTTTCTTTCTTGGGTTATGGCCTTATCTGGCTTGCTGTTACCCAAACTGTTTCCAGCCTTCC CTATGTGGTGCTATGGCTCGCTCTTGCTGTTGCCACTAACAGCGGTGCATGGTTTGGCACGGCCGTGCTTGTTACCAACA TGAGGAACTTTCCTCTCAGTAGAGGCACCATCTCTGGCATTCTCAAAGGTTATGTGGGGATTAGTGCTGCAGTGTATACA TTAATATATAGCACACTGCTTAAAGGGTCTGCTTCTAAATTACTCTTGTTCCTAGCAATCGGGGTCTCTATTGTGTGTTT AGTTATGATGTACTTCATTAGGCCTTGCACTCCTCCTTCAGGAGAAGACTCTTCAGTGCATGTCCATTTTATTTATACCC AAGCTGCAAGTGTTTTACTTGCCTCCTATCTTGTTACAACCACAGTAGCATGTGACATTGTTTCCATAAGTGATTCTGTT TCCTACATCCTAGTTGCCATAATGGTTATACTTCTGATGACTCCCCTTGCAATTCCTGTTAAAATGACACTATTTCCTTC CGATGCAAAGAACAAAGTTCCAACGGTTAGTTCCTCAGATCAGTTAGATGATGTTTCAATGCAGACAAGTCCATTGTTGA CACCATCTTCTTCAACTGCATACCTTGAAAGTTTTCATGAAAGTGAGGATACTTCAGATGTTGAGACTCTTATTGCAGAG GGGGAAGGAGCAGTTAGAAAGAAAAGGAGGCCTAAAAGAGGAGATGATTTCAAGTTTTTTGAAGCCTTGGTCAAGGCAGA TTTCTGGCTTCTTTGGTTTTCTTACTTTCTTGGAGTAGGCTCAGGAGTAACAGTTCTCAATAATTTAGCTCAAATTGGAG TTGCTTTGGGAGTAGAAGATACCAGCATATTGCTGTCTGTTTTCAGCTTTTGCAACTTTATAGGGCGTCTTGGTGCTGGC ATTGTTTCTGAACACTTTGTTAGGTTGGTAACACTGCCAAGGACATTTTGGATGACAAGTACACAAATCATTATGATCAT AGCATTTTTACTTTATGCTTCAGCTCTGGATGGCACTCTTTATGCTGCAACGGCTGTGCTTGGGATCTGCTATGGGGTTC AATATTCTATAATGTTTCCAACTGTCTCAGAGCTTTTTGGTTTGAAGCACTTTGGTGTTATTAGTAGCTTCATTATGCTA GGCAATCCGGTTGGTGCCCTTCTTTTCTCTGTTTTCCTTGCTGGCAATGTGTATGACACAGAAGCTGCAAAGCAAGGAAA CTCCACCTGCTATGGCGCAGATTGCTTCAGGCTCACCTTTCTTGTTTTGGCTGGTGCCTGTGGACTTGGTACCATCTTGA GCATCATCTTGACAGTTAGAATACGACCGGTATATCAAATGTTGTATGCAGGGGGTTCATTTCGTCTGTCGCGGACTTCA AACCACTGA
Protein sequence (LotjaGi3g1v0006500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPKLVLKAGSRPPWVGLAAAVWVQIAAGNVYNFPLYSSALKSVLGLNQQQVSFLGVANDVGESVSLLPGLASNKFPPWAL LLVGSVLSFLGYGLIWLAVTQTVSSLPYVVLWLALAVATNSGAWFGTAVLVTNMRNFPLSRGTISGILKGYVGISAAVYT LIYSTLLKGSASKLLLFLAIGVSIVCLVMMYFIRPCTPPSGEDSSVHVHFIYTQAASVLLASYLVTTTVACDIVSISDSV SYILVAIMVILLMTPLAIPVKMTLFPSDAKNKVPTVSSSDQLDDVSMQTSPLLTPSSSTAYLESFHESEDTSDVETLIAE GEGAVRKKRRPKRGDDFKFFEALVKADFWLLWFSYFLGVGSGVTVLNNLAQIGVALGVEDTSILLSVFSFCNFIGRLGAG IVSEHFVRLVTLPRTFWMTSTQIIMIIAFLLYASALDGTLYAATAVLGICYGVQYSIMFPTVSELFGLKHFGVISSFIML GNPVGALLFSVFLAGNVYDTEAAKQGNSTCYGADCFRLTFLVLAGACGLGTILSIILTVRIRPVYQMLYAGGSFRLSRTS NH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | - | – | |
| PANTHER | 1 | 562 | 562 | 2.6E-300 | – | |
| PANTHER | 1 | 562 | 562 | 2.6E-300 | – | |
| SUPERFAMILY | 10 | 198 | 189 | 3.53E-11 | ||
| Phobius | 12 | 31 | 20 | - | – | |
| CDD | 12 | 531 | 520 | 7.22206E-105 | – | |
| Pfam | 13 | 260 | 248 | 4.6E-84 | ||
| TMHMM | 13 | 35 | 23 | - | – | |
| Gene3D | 15 | 205 | 191 | 1.8E-7 | – | |
| Phobius | 32 | 77 | 46 | - | – | |
| TMHMM | 77 | 99 | 23 | - | – | |
| Phobius | 78 | 99 | 22 | - | – | |
| Phobius | 100 | 105 | 6 | - | – | |
| Phobius | 106 | 131 | 26 | - | – | |
| TMHMM | 108 | 130 | 23 | - | – | |
| Phobius | 132 | 142 | 11 | - | – | |
| Phobius | 143 | 162 | 20 | - | – | |
| TMHMM | 145 | 167 | 23 | - | – | |
| Phobius | 163 | 173 | 11 | - | – | |
| Phobius | 174 | 193 | 20 | - | – | |
| TMHMM | 174 | 193 | 20 | - | – | |
| Phobius | 194 | 241 | 48 | - | – | |
| TMHMM | 208 | 230 | 23 | - | – | |
| SUPERFAMILY | 239 | 543 | 305 | 1.31E-19 | ||
| Phobius | 242 | 260 | 19 | - | – | |
| TMHMM | 243 | 265 | 23 | - | – | |
| Phobius | 261 | 347 | 87 | - | – | |
| Gene3D | 340 | 542 | 203 | 2.1E-14 | – | |
| TMHMM | 348 | 370 | 23 | - | – | |
| Phobius | 348 | 370 | 23 | - | – | |
| Phobius | 371 | 381 | 11 | - | – | |
| Phobius | 382 | 403 | 22 | - | – | |
| TMHMM | 383 | 400 | 18 | - | – | |
| Phobius | 404 | 414 | 11 | - | – | |
| Phobius | 415 | 434 | 20 | - | – | |
| TMHMM | 415 | 433 | 19 | - | – | |
| Phobius | 435 | 439 | 5 | - | – | |
| TMHMM | 440 | 462 | 23 | - | – | |
| Phobius | 440 | 459 | 20 | - | – | |
| Phobius | 460 | 470 | 11 | - | – | |
| Phobius | 471 | 498 | 28 | - | – | |
| TMHMM | 472 | 494 | 23 | - | – | |
| Phobius | 499 | 517 | 19 | - | – | |
| TMHMM | 515 | 537 | 23 | - | – | |
| Phobius | 518 | 539 | 22 | - | – | |
| Phobius | 540 | 562 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0006500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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