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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0006700 |
| Transcript ID | LotjaGi3g1v0006700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Amino acid transporter, putative; TAIR: AT1G80510.1 Transmembrane amino acid transporter family protein; Swiss-Prot: sp|Q28HE5|S38A6_XENTR Probable sodium-coupled neutral amino acid transporter 6; TrEMBL-Plants: tr|G7IIA0|G7IIA0_MEDTR Transmembrane amino acid transporter family protein; Found in the gene: LotjaGi3g1v0006700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:816837..819320) extracted from Lotus japonicus Gifu genome v1.2.
AGTAAAGTAAACTCAAAGAGACAACGTAGGAACTAGGAAACTCCGAGGAACAACGACCTTTCTCCCCCTAAACTTGCCGT TCCTTGCGTTTCTCTCTCTCTCTCTCTCTCTCTTGATGTTATGTTGCAGGCAGCTGCTGAGTGCAGAAGAAAAAGAAGAA GAATGAATGAATAATTCAATTCAATGCAAATATCCATTGACCCAGAGATCTAGGGTTCTATAAATCCAAAAGAGCTCCCA TCTTTTAATCCCAATTCTGTAAGTTCTTCCTCTCTTAAGATCTGTATCATTTTGATCTGTCAAATCGATCATGTCTCACA GAAAGGATTCTAATTATTCTTCATTACCCGTTAGCTCCTATCTAGAATTACAGCCTCACAATGATTCCTCTTTTGATGAA CCTGGGGAGAGGGATTATTTGGGATCTAAGGTTGTCGATGATGACTACGATGATGATTTCGAAATTGACATTGATAATTA CCCTCTTGTTGTTGTTGGCTCTAATCACGGTTCTGGGGTACCCGGGGCTGTGTTCAATTTGACCACCACGGTTATTGGGG CAGGGATCATGGCCCTCCCTGCCACCATGAAAGTTCTAGGAGTGGTTTTGGGGATTGTTTTGATTATTCTCATGGGGATC TTGTCGGAAATTAGTGTCGAATTGTTAGTGCGGTTTTCTGTTTTATGTAAAGCTTCCTCTTATGGGGAGGTTGTTCAGCA TGCTATGGGAAAGCCTGTTAGGATTGTGTCTGAAATCTGTATTATAATGAATAATGCTGGTGTTATGGTGGTTTACTTGA TCATCATGGGGGATGTCATGTCTGGTTCCCTTCACCATTTGGGGGTGTTTGATCAGTTGTTGGGGAATGGTTTGTGGGAT CATAGGAAGATTGTGATTTTGGTTGTCATGGTGGTGTTTCTCGCGCCGCTTTGTTCTCTCGACAAGATTGATTCGTTGAG CTTGACTTCAGCTGCCTCAGTGGCTCTTGCTGTTTTGTTTGTTGTCGTTGCTTTCTTCATTGCTTTCATTAAGCTCGTCG AAGGAAAGATTGACGCTCCGAGGATGTTTCCTGATTTCAGCTCCAAAAAGGCCATCTTGGACTTGCTGGTGGTGATTCCT ATCATGACCAATGCATATGTTTGTCATTTTAATGTGCAGCCGATATACAATGAGCTCCAAGGGCGGTCTCCGCAGAAGAT GAACCGGGTCGGGAGGATCACCACAGTTTTGTGCATCCTAGTTTATGCTTCAACAGCACTCTCAGGTTACCTCCTATTTG GGGATGATACGGAGTCTGATGTGCTGACTAATTTTGATAAGGATCTAGGAATTCGGTTTAGCTCGGCCTTGAACTATATT GTCCGCGTCGGCTACATTCTCCATTTGATACTTGTCTTCCCTGTTATTCATTTCTCCCTACGCCAAACGGTGGATGCCTT GGTGTTTGAGGGATCTCCTCCCTTATCAGAAAGTAGGAAGAGATCGTTGGGGTTGACTTTTGTTCTGTTGATCCTCATAT ATATTGGGTCTACCATGATTCCAAACATTTGGACAGCTTTTAAGTTCACCGGTGCAACCACAGCAGTTTCATTGGGTTTC ATATTTCCATCTCTTGTTGCATTGAGATTGAGCCATAAGTGGGATTTGAGCCATGGAGAATGGATTTTATCTTGGTTAAT GTTGGTATTGGCTGGGATTGTTAGCATAGTAGGAGTCATTGGCAATGTCTATAGCATGCAGAGTAAGTCTCAATGACTCC TTTGTATCAGTTTTAATTCACAGGAATCAGTTGATTTTTTTACAAGGCATAGGAAGGTGACTTGTTCATTGGCCCTGCTG CGTATGCGATTCAAACAGCAGAAGATAGACAATGTAAGGATCCTTTAATGTGTAATAATTTTTTTTCTATTTTACCTCGG CTGTGATACATAAGATATGAGATGCACTTCATGCCTCAGAAGGCCTTGAATTCTTTAGGGATGATTCAGTGTGGAGGAAT TTTTTGGCTGATTTGTTTGCCACAGGAATAGCTATGTATACGGTTCAGTCAGTTCTATTTTTTGCCAATTAATTTTATAG AAGAATGATGTTGCAACTTTTTGTAACGATTCTTACAAATACTTAAATGGTAGATTTCGAAGATTTATTTCATTGCCAGT AAAAATTGTATGTTCTAGTTGGTTTTTGTCTGCCAATTTTCTCTTTGAATAGTGCAAGTTTAACACTTGACTAACCATTT CATCTACTTAGTTCAACTGTGAACCATGACCCGATTTGTGGATGAACCAGTAAGGTGAAATAAATCAAATTTCTTGTACA AGTTAAAACCAGCTGCCAGCTGGTACCTCAACATTCTGAAAAGCTCCCCCTTCTAACTCTTCCGTAAATATTTACTCTTG AGCATTTCAGACCAGATTATTTTTCAGTAAGGCTTGTTATATTAATGTATGTTTTTTAGAAGTAAAGAATAGGCTTGTTG TATG
CDS sequence (LotjaGi3g1v0006700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTCACAGAAAGGATTCTAATTATTCTTCATTACCCGTTAGCTCCTATCTAGAATTACAGCCTCACAATGATTCCTC TTTTGATGAACCTGGGGAGAGGGATTATTTGGGATCTAAGGTTGTCGATGATGACTACGATGATGATTTCGAAATTGACA TTGATAATTACCCTCTTGTTGTTGTTGGCTCTAATCACGGTTCTGGGGTACCCGGGGCTGTGTTCAATTTGACCACCACG GTTATTGGGGCAGGGATCATGGCCCTCCCTGCCACCATGAAAGTTCTAGGAGTGGTTTTGGGGATTGTTTTGATTATTCT CATGGGGATCTTGTCGGAAATTAGTGTCGAATTGTTAGTGCGGTTTTCTGTTTTATGTAAAGCTTCCTCTTATGGGGAGG TTGTTCAGCATGCTATGGGAAAGCCTGTTAGGATTGTGTCTGAAATCTGTATTATAATGAATAATGCTGGTGTTATGGTG GTTTACTTGATCATCATGGGGGATGTCATGTCTGGTTCCCTTCACCATTTGGGGGTGTTTGATCAGTTGTTGGGGAATGG TTTGTGGGATCATAGGAAGATTGTGATTTTGGTTGTCATGGTGGTGTTTCTCGCGCCGCTTTGTTCTCTCGACAAGATTG ATTCGTTGAGCTTGACTTCAGCTGCCTCAGTGGCTCTTGCTGTTTTGTTTGTTGTCGTTGCTTTCTTCATTGCTTTCATT AAGCTCGTCGAAGGAAAGATTGACGCTCCGAGGATGTTTCCTGATTTCAGCTCCAAAAAGGCCATCTTGGACTTGCTGGT GGTGATTCCTATCATGACCAATGCATATGTTTGTCATTTTAATGTGCAGCCGATATACAATGAGCTCCAAGGGCGGTCTC CGCAGAAGATGAACCGGGTCGGGAGGATCACCACAGTTTTGTGCATCCTAGTTTATGCTTCAACAGCACTCTCAGGTTAC CTCCTATTTGGGGATGATACGGAGTCTGATGTGCTGACTAATTTTGATAAGGATCTAGGAATTCGGTTTAGCTCGGCCTT GAACTATATTGTCCGCGTCGGCTACATTCTCCATTTGATACTTGTCTTCCCTGTTATTCATTTCTCCCTACGCCAAACGG TGGATGCCTTGGTGTTTGAGGGATCTCCTCCCTTATCAGAAAGTAGGAAGAGATCGTTGGGGTTGACTTTTGTTCTGTTG ATCCTCATATATATTGGGTCTACCATGATTCCAAACATTTGGACAGCTTTTAAGTTCACCGGTGCAACCACAGCAGTTTC ATTGGGTTTCATATTTCCATCTCTTGTTGCATTGAGATTGAGCCATAAGTGGGATTTGAGCCATGGAGAATGGATTTTAT CTTGGTTAATGTTGGTATTGGCTGGGATTGTTAGCATAGTAGGAGTCATTGGCAATGTCTATAGCATGCAGAGTAAGTCT CAATGA
Protein sequence (LotjaGi3g1v0006700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSHRKDSNYSSLPVSSYLELQPHNDSSFDEPGERDYLGSKVVDDDYDDDFEIDIDNYPLVVVGSNHGSGVPGAVFNLTTT VIGAGIMALPATMKVLGVVLGIVLIILMGILSEISVELLVRFSVLCKASSYGEVVQHAMGKPVRIVSEICIIMNNAGVMV VYLIIMGDVMSGSLHHLGVFDQLLGNGLWDHRKIVILVVMVVFLAPLCSLDKIDSLSLTSAASVALAVLFVVVAFFIAFI KLVEGKIDAPRMFPDFSSKKAILDLLVVIPIMTNAYVCHFNVQPIYNELQGRSPQKMNRVGRITTVLCILVYASTALSGY LLFGDDTESDVLTNFDKDLGIRFSSALNYIVRVGYILHLILVFPVIHFSLRQTVDALVFEGSPPLSESRKRSLGLTFVLL ILIYIGSTMIPNIWTAFKFTGATTAVSLGFIFPSLVALRLSHKWDLSHGEWILSWLMLVLAGIVSIVGVIGNVYSMQSKS Q
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 72 | 72 | - | – | |
| PANTHER | 39 | 480 | 442 | 5.5E-205 | – | |
| PANTHER | 39 | 480 | 442 | 5.5E-205 | – | |
| TMHMM | 66 | 88 | 23 | - | – | |
| Pfam | 67 | 471 | 405 | 2.8E-64 | ||
| Phobius | 73 | 92 | 20 | - | – | |
| Phobius | 93 | 97 | 5 | - | – | |
| TMHMM | 98 | 120 | 23 | - | – | |
| Phobius | 98 | 124 | 27 | - | – | |
| Phobius | 125 | 144 | 20 | - | – | |
| Phobius | 145 | 165 | 21 | - | – | |
| TMHMM | 145 | 167 | 23 | - | – | |
| Phobius | 166 | 193 | 28 | - | – | |
| Phobius | 194 | 210 | 17 | - | – | |
| TMHMM | 194 | 211 | 18 | - | – | |
| Phobius | 211 | 221 | 11 | - | – | |
| TMHMM | 218 | 240 | 23 | - | – | |
| Phobius | 222 | 242 | 21 | - | – | |
| Phobius | 243 | 261 | 19 | - | – | |
| TMHMM | 260 | 282 | 23 | - | – | |
| Phobius | 262 | 282 | 21 | - | – | |
| Phobius | 283 | 302 | 20 | - | – | |
| TMHMM | 303 | 325 | 23 | - | – | |
| Phobius | 303 | 323 | 21 | - | – | |
| Phobius | 324 | 348 | 25 | - | – | |
| TMHMM | 349 | 371 | 23 | - | – | |
| Phobius | 349 | 370 | 22 | - | – | |
| Phobius | 371 | 390 | 20 | - | – | |
| Phobius | 391 | 410 | 20 | - | – | |
| TMHMM | 392 | 414 | 23 | - | – | |
| Phobius | 411 | 415 | 5 | - | – | |
| Phobius | 416 | 440 | 25 | - | – | |
| TMHMM | 419 | 438 | 20 | - | – | |
| Phobius | 441 | 451 | 11 | - | – | |
| TMHMM | 451 | 473 | 23 | - | – | |
| Phobius | 452 | 474 | 23 | - | – | |
| Phobius | 475 | 481 | 7 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0006700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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