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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0009000 |
| Transcript ID | LotjaGi3g1v0009000.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DUF4050 family protein; TAIR: AT5G25360.3 hypothetical protein; Swiss-Prot: sp|Q20497|MED12_CAEEL Mediator of RNA polymerase II transcription subunit 12; TrEMBL-Plants: tr|C6T0Q9|C6T0Q9_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi3g1v0009000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:1037377..1041495) extracted from Lotus japonicus Gifu genome v1.2.
CTTTTGGAGCCCCAATGCAACTTTGCTTCGGAAATGAACTAAATTCGGCTGACGATATAATTAGAGGCTCGAAAAAGAAT AATTGTTTTGTTTAACAAAGGGACCAAAAAGATAATTAACCTTATTGTTGAAGACAGAGTAATTAAATTAAATTAATAAA GAAATAGTCAATCCACCGTCAACATATATATTATTTGCCGGAAAAGAAGAAAGAAACAGAATCCAAAACAAACACCACCC TTCTCAGAAGTGATGCTCTCGATTTCAACTTAGGTAAAAAGAGACAGAACAGGTTCCTTCTCATCCATGTTATTTCCATT TCTAATCAACTCTATCTGTTCTTCACTTCGATATATTTTTCTAATTTATTCTCTGTTTATTTTATTTTATTTTGAATTTT CAGGATTGGTCTCTGAATTTTTCTTCCAGGAATCGCAGTTTGGCTTCTTCAATTGCCCATAAATTCATTGTAACAGATCT GAATAAGGTTTTTGCGGTATTTCAGTCACTGCATGCATATGGGGTATGTGTTCTGAATCCAGCTGAAACTAAATCAAAAT AGTCCCTTTTTCAGTTTTACTTGCAATTTTCACTTTTATCTTTTGTGGGTATCAATGATTTTCTTCCAATTCACCGACAA AGAGAAATCATGTAGTGGTATGTGTATGACTCCAATGATTGATCATTCTAGGTTGGAAGCTGGGGATAATTTTTGTTTTC TTTTTTGTTTATATGGTTGTTTCGAAAAAATTATCAAAAGGGACTATCACTAATTGGTGAGTTGGAGAACTTGTACTTTT TCCTCTCTTAATAATGAAATCAGAAACAGAATCAAAATCAGGAAGCTGCGAATTTATAGTTGTTTATGTGCTTCGATTTC TCATTTATCTTATTGAAGTGGTGCTGTGGTTCGAACACTCGTGGTAAAGGCAAGGAGCAAGGTGTTTCTCTGTTTTCTTT TGGTCCTAGTGAGCTTATATTTTCTGATCACCATCGTAAAGGCGTCGAAGTGCATATCCGTTTTATGGAAGTTGTCTGTC ATAACTCAACTACTATTTGTTAAAAAACATCACTGATTAGATTATAGTTTTACGGATGTGAACCCGATGATCTAATTCTG TGCTTAAGGATCAAAATAGGCAATATACCTACACTTGAAGGAGAACACGTCGGTGTTTATGATTTTCTTTTAACTGGTTA CTAGAAAATGCCGTCTTAGAATCATTAGATGGTTGCTACTTGCTATTCCTCCATTTGACCTTAATGTAGATAGCTGTGAA AACGCTGGTATTGTGACACTTTTAAACTATGTTATCCGATTTATCATTTATGTAGACTCAGATGTAAGAACTTTAATCTG GAATGCAGAATAGGGCCTTGAATAATTAGTTTGCTTGTCTTTACATACTAATATAATCATACTGATAGGAAACCTAGTTG TTTGATACTTTGATATTTTTTTGGATATACTCGTAATTTGCGTTTTCTATTACTTTATCATGAGAGTAATTCTGCTGGAA CCATTTCTTTTGTTAAAAAAGTATAATTATAGGGACTGAACCAAGTTGCCACTATTAAACTGTGGTATTTGAATTTGTGG AGGCTCTTCTAGACAATCATATAATTGTATTGTGATGTATAACAGAATCTAATGTGATTGTAACAGAGCAGTGGTTGTCT TGGACTCCATAAAAAGCCCACGCTAATTGCTACAGCAGATGTGCCATCAAAACGATTGACACAACACAATAAGGCGGTGA AGAAAGCTAGCACATCAGAGGATTTCTGGACCACCAGCACACATGATATGGACAACAGCGCTGTTCAGTCACAGGGAAGC ATCTCATCAACCAGTGTAACCAACCTACCTGCTGATCCTCATGCTGGTTCTTCCAACCCAACTGAATTTGTAAACCATGG TACCATATGTCGTTGCTTTTAGCTTCCAGATATTTTACTGTATAGACATGATAATTGAATATGTATTTTAGTCAAGAAAT GTTTGAAAGAAAAAAGGAATATTATGGGTTTGCATGATGAAAACTGAAAGCACCTATTGCCATTGGTTGGATTTATTTTT ACTTGCTCGTTAACCCGTGGGTTTCATTTATGGGCTGTTGGCTGACTATTGTGGGTGCCCAGTGCAAGATGTATCTTGTT GCAAGTTGCTTGTTGAATGCTGAAGCAATATATGAAATGTGGTTTGAGTGTAACTTTCATCTACTCTTCCCTACTTCATC AAGATGCCTTGGTTGGTAACTTCTTGGGATACTGGATTGGATTCTTACATGATAGACTGTTATATTTAATTTTCCAATAA TATTTTTTTAGGTTTGAAGACAACAGTTCATATACCTTTCTTTTGATTCGTGCAGTGTTCATTTGTGCAACTTTGTTAAT TGTCACTTATTATTTTCTTTTGCTATATGCTTTTCTCAAGTTGTCTTTCTGAGCTGATCTGATATGGATAAGTTACCTTT CATATCACTGAATTGGCTTCATGGAAATTTAGTCAGTTTTTCATTTGTCTCCCTATTTATATGTTGTTGTCTTTCTGCCT GTATTAAATTGTAGTAAATGAGATTTTGGAAGATGTGGAATCGTTGGTCATTTTACTTGAAAGTTTTCTCACAGAAATTG GCAAAGATAGGAAGGGAAAAGTTATCAACAAAGGTTTTTTTTTTGGCAGGTCTAACTCTTTGGAATCAGACACGGCAACG TTGGATAGGAAATAATAAAAGGCCTGAGAAACAAACAGAACAATCGCGTGAACCAAAATTGAGGTACACTACATTGTTAG ATTAGTTTTACTAGCAGTATGTTTTTAGTAAGCTAAATTTAATCAATGGCAAAAGAAGCTGAGGACAACTCCCCCATATG AGAACCAGAAAAAGCAAGCCCAACCAACAGCCGTAGCAAGGCCCCCAACACCAACAAAAGAACAGACCAAAAAACACCTT ACAAAACCTAAAAAAAGAAACATGAAAACAACCAAGACAAAAAACCCAAAAGCCTCCAACAACGCACACACCACCACTAA CCCCACAAACAAAAAAGAAAAGACCAAGATCAATCTCAAGAAGACCAAGCCTCCCTCATCTCCTCAAGTCCCTGAATAGC TTCCTCATCGGTACTGTCATATTCTAGGCCCAAAAGGTCTTACTAGCAGTATTGATTTATCAATTTTGTTATTCTACTTT TATTCATTGGGTGAGTGTGGTGATGCTGTATAGCACCCTTTTGGTTTCATTCCTTCTTAGATCCACCATGCCTTCAAATT TTGAGAATGCATGAAGTCTTCACAGATGTTTTCTTGGAATCTGATAACGTGTTAACTTTGTAAAAACTTCAGTCAGTTGG AACCTTTATGAAAATTCTCGAATTTCTACTGTTTACATATGTTGAAGTTGTGTTAGGATCACTAGAAAATTGCTAATTCG TCATAGTAGCCCTGTATTCTTGTCTTTAATTTTTAATACTTATACAAGTTGACAAGGTCAATTCCAAATTTGTCTTTTGC TGATGAAAATATGTAATGATTCGGCAGTTGGAACGCAACGTATGATAGTTTACTGGCGAGCAACAAGCCATTCCCTCAGC CTATTCCCCTTGCGGTAAGCATCTACTTCTGAGCCACCTTGCAGTTTAAGTGCAATAACGGGTTTATCTGACATGGCTTG TATGTATCAATATTGTTAGGAAATGGTAGATTTTCTAGTGGATATCTGGGAACAAGAGGGCTTGTATGACTGAACCATAA AGATTGAACGAGTGTTGTATCTATGAAATAATTTTAGTTCTTTATTCTGAAGAGGAAATTGGGCATTCTACAGTTTGTGT ATCTATTGTAACATTTAAGATGAGGAGGAATTTTCTCCACAGGCCTTTGGCATAATTGTATTATAATTTCATTTAATTAA TGGCACTGGCTCTGAAGAGGCTAGGTTTACAGAAACATTATCCTTTTTTTGCATCAATAGCCACAACATGTATTTGCTTC TCCTTTCCTTAATGTTTGAACTTCGAATTGACCTGTCTCCTGTGTCGAATCTTTGTATGAATTACTTTAAGAAGAATAAT CATGAATTTTTTTTAATGGAAAATAGCCATTTACCATTG
CDS sequence (LotjaGi3g1v0009000.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCATATGGGTGGTTGTCTTGGACTCCATAAAAAGCCCACGCTAATTGCTACAGCAGATGTGCCATCAAAACGATTGAC ACAACACAATAAGGCGGTGAAGAAAGCTAGCACATCAGAGGATTTCTGGACCACCAGCACACATGATATGGACAACAGCG CTGTTCAGTCACAGGGAAGCATCTCATCAACCAGTGTAACCAACCTACCTGCTGATCCTCATGCTGGTTCTTCCAACCCA ACTGAATTTGTAAACCATGGTCTAACTCTTTGGAATCAGACACGGCAACGTTGGATAGGAAATAATAAAAGGCCTGAGAA ACAAACAGAACAATCGCGTGAACCAAAATTGAGTTGGAACGCAACGTATGATAGTTTACTGGCGAGCAACAAGCCATTCC CTCAGCCTATTCCCCTTGCGGAAATGGTAGATTTTCTAGTGGATATCTGGGAACAAGAGGGCTTGTATGACTGA
Protein sequence (LotjaGi3g1v0009000.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHMGGCLGLHKKPTLIATADVPSKRLTQHNKAVKKASTSEDFWTTSTHDMDNSAVQSQGSISSTSVTNLPADPHAGSSNP TEFVNHGLTLWNQTRQRWIGNNKRPEKQTEQSREPKLSWNATYDSLLASNKPFPQPIPLAEMVDFLVDIWEQEGLYD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 157 | 155 | 1.4E-81 | – | |
| PANTHER | 3 | 157 | 155 | 1.4E-81 | – | |
| MobiDBLite | 44 | 79 | 36 | - | – | |
| Pfam | 46 | 112 | 67 | 1.5E-10 | ||
| Pfam | 116 | 157 | 42 | 9.0E-15 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0009000.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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