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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0010700 |
| Transcript ID | LotjaGi3g1v0010700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Alba DNA/RNA-binding protein; TAIR: AT2G34160.1 Alba DNA/RNA-binding protein; Swiss-Prot: sp|O22969|Y2416_ARATH Uncharacterized protein At2g34160; TrEMBL-Plants: tr|I3SKS5|I3SKS5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0010700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:1167135..1169778) extracted from Lotus japonicus Gifu genome v1.2.
GCCCAATGATAGAATACAGAAGTGGTGCTTGACTTCTACAGTTTTCTCTTCCACAAACACAAATTGTTTGTAATTAGGGT TTTTGATTCATCGAGGAACAGAGAACGAACGACATCAACATCAACATCAACATGGAAGCCATAACAGAGGGAGTGAACAA CATCAACATCAGCACCAACAACAACGATTCGTTCAAGAAGAATCGGATTCAAGTCTCCAACACCAAGAAGCCTCTCTTCT TCTACGTTAATCTCGCCAAGGTACCACTATAATCTCTGTTCTGCAATTTTTTTTTTTGAATTTTAGTATGAATTTCTTTG GTTTAATTGCGTTTTTTTGTTGTTGTTGCAGAGATATATGCAACAGCATAATGAGGTCGAGCTCTCCGCACTTGGAATGG GTACTCTCCTAAATTTGTCACTTTTTTTTGTTCTGTTTCATTCATTTAATACTATGTTAGGAAAATTCAATCTGTCGAGT CGATTCGCGGAAACATTAAGTGTATATATGAAGGCATGATAGATAGGTTTTCATGTTAGGGGGAGAAGTGAGGGAGAAGC TACTAGGAGTAGGTTTTATGAGGGAGAAGTGATTCTGGGATTATAAATAGTGGGTCTAAACATACTGTAAGTGTTTGAGA TCGGTAATTGCGAAAAAAAAAGAACTGAAGAATCATAAGCTTTGACCCTTCAATGAACTGAAGAAGATGTGGAAGCATTT TATTAGTGCCTCCACAAGTGTTGAGGTTTTTTTTTGTGTGCCTGCCCTGAACTTTTGGATGATTTTAGTCTTGGACTCTG CTTCGAACTTTTAATCCGTCTCCATTTACTTATCATCTCCTAAAAAGCTGTATGCAGGTAGCATTAGGTTTGTTTGCTGG CTCATAGTATTGTTTAGCTATGCATAACAACTTAGACAGTTAGTTTGCCCAATTGCACAAACTTTTAAGAAAAAGAAAAA TTGGAATGATCTTGTGATTACTGTCTCTTAAATAGTAACTGCGTGCCTAAGCTGAAACAAGGTTCTCCACTTCAATTATT TTCAAATACTTTTTTCCTTAGTTAGAGAATTAAATATTTGTCTTAGTGGAGGAGCTCTTATAAGCTAGAAGCTTATTCAA ATTGGACCTTGGGTTGGAAAATCTGTCTAAGACAAATTGGATTCGCTATTTTTGTTACCATGTATTATTTTGGAGTGTTG TGCATAGATTTGTTTTTGACGGTTGGCTACACTGAAGTTCTGCCAACAAGGACCTTTCTTCCATTATTTAGGTGTTATAA GTTAATCAATTTGATTGAAGATAGAAATGCGGGGACAAAATCACTCACAAGAGTCGTGCTGAGTATTTGCAATGGTGCAT GAAGACTAGAAAAACTTTTTTTTTCAAAATTTATACAGAAAGGCATTACAAAGTTAATGACGAAAATAGTGCACTGTGTT TTATGTTGTGACTTACTAGTTCTATCTTTTCTTTTCTCCTTTGATTTATGCAGAAAGACATTACAAAGTTAATGAGGAAG ATAATGCGCTGTTATATGTTGTGACTTTCTAGTCCTATCTTTTCTTTACTCTTGATTTCTGATTTCTTTTCTATTTCATT GTTACAGCTATTGCCACGGTGGTAACTGTTGCTGAAATTTTGAAGAATAACGGGCTTGCTGTTGAAAAGAGTGCGTCAGT GTGATACTTTTTTTTCCTCTCTGACTCCTTCGAAATGTCTTCTCTCCCTTGTTGTTGACACTCCTTATGATTCTGTAATG GTTGAATTATCTAATTTGATTCATGATGAAATCTTGATGCAGAAATTTTGACATCAACAGTTGACATCAAGGATGATTCT AGAGGTAGACCTGTCCAAAAGGCCAAGGTAAGGGTCCAAAAAAGTTCTTTTTTACCCTCGAGTGTTTGCCTTGGAGCCTG TTTGACCTTGTTATGTGTGAGTGTGCGAGCAATCATACAATCTTAGAAGTTAAAAGAAATGCCTGTAAAAAAATAGCCTT TGTTGATTTTAGAACAACCTCAAACAGTCTCCTTCCAATCTATATGGCTTTGGTTTGGTTCTATGATTCTCCTCTAAGCT CTACATTTGTTGACTAATGTTTTAGATTGAAATAGTACTTGGGAAAACAGCACACTTCGATGAGCTCATGGCTGCTGCAG CTGCTGAAGATGCTGAAAATGGTGATCTTGAAGAGCAGCAGGGTGCATGAAGTTGGTCAAAATTAAACCTGAATCGGTTG AAGATATGTACTTTTAAGTGATTTGCAATTTTGTTGTCATTAGAGGACATTTCATTATTTGTAGTGTAACCTGCTCTATT GAACACCAAAATTCGTTTGTTTCTTTTCCCCATATAAAATAGGCATTTATTGTTTTGATCATTGCTGGATTTACTTTATT ATTTTTCATTCAGAGGGTCATGATATTTCATATGTTCTGAAATGTTAACACGAATCTGTGTTTCTTCAATTGCCATGGCG ATCCACTTATGTAGTTATGAAGTCAATCTTTCATTTCCTCCCTATCAAATCGTGGCATTTTAATAACATTTTAAAGGTTT CAAAAATCGTTAGAGAACCAAAAGTAAACGGAAAGAGGGGCTAGTTCCTTGCTAAATACTACGATACACCAACAGGAGGG GCAT
CDS sequence (LotjaGi3g1v0010700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGCCATAACAGAGGGAGTGAACAACATCAACATCAGCACCAACAACAACGATTCGTTCAAGAAGAATCGGATTCA AGTCTCCAACACCAAGAAGCCTCTCTTCTTCTACGTTAATCTCGCCAAGAGATATATGCAACAGCATAATGAGGTCGAGC TCTCCGCACTTGGAATGGCTATTGCCACGGTGGTAACTGTTGCTGAAATTTTGAAGAATAACGGGCTTGCTGTTGAAAAG AAAATTTTGACATCAACAGTTGACATCAAGGATGATTCTAGAGGTAGACCTGTCCAAAAGGCCAAGATTGAAATAGTACT TGGGAAAACAGCACACTTCGATGAGCTCATGGCTGCTGCAGCTGCTGAAGATGCTGAAAATGGTGATCTTGAAGAGCAGC AGGGTGCATGA
Protein sequence (LotjaGi3g1v0010700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEAITEGVNNINISTNNNDSFKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTVAEILKNNGLAVEK KILTSTVDIKDDSRGRPVQKAKIEIVLGKTAHFDELMAAAAAEDAENGDLEEQQGA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 134 | 134 | 2.1E-81 | – | |
| PIRSF | 1 | 136 | 136 | 2.6E-62 | ||
| PANTHER | 1 | 134 | 134 | 2.1E-81 | ||
| Gene3D | 22 | 133 | 112 | 2.3E-50 | ||
| SUPERFAMILY | 23 | 118 | 96 | 2.88E-26 | ||
| Pfam | 24 | 85 | 62 | 5.7E-13 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi3g1v0010700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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