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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0011000 |
| Transcript ID | LotjaGi3g1v0011000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Peptide deformylase; TAIR: AT1G15390.1 peptide deformylase 1A; Swiss-Prot: sp|Q9FUZ0|DEF1A_SOLLC Peptide deformylase 1A, chloroplastic; TrEMBL-Plants: tr|Q2HVV7|Q2HVV7_MEDTR Peptide deformylase; Found in the gene: LotjaGi3g1v0011000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:1210730..1213799) extracted from Lotus japonicus Gifu genome v1.2.
CCAGTATATATACATTATACAATTGAATTTGTAGAATAAATTTGGGGATTAAAATGAAATTGCGATTTTAAAGCATGGCA GCGGTGCAGCGGCTAGCGTGGCGTTTCCGCCCGGCTCCGCCGCTCATGTTCGCACTCGCCAACGGCGTCGCAACACCCTC AGCTTGTAGTAGCAGCACCAGCACCGCAGAATCAGCATCGAGCTCGAAACAATGCAGGCCCTTCAACTCCACAGCATCAT CTTCTTCTTCTTCTTCATCATCAAAGGCAGGTTGGTTTTCGGGTCTGACATTGCCGAAGGTTGTGAAAGCTGGAGATCCC GTTCTGCACCAGCCTGCACGTGAAGTTGATCCCAGTGAGATGAAGTCGGAGAAGGTGCAGAAGATCATCGATGACATGAT CCGTGTCATGAGGAATGCACCTGGTGTTGGTCTCGCTGCCCCACAAATTGGACTTCCCTTCAGGGTATGTGGGTTGGTTA ATGGTGTTTGATTAAATTGATTAATCAACAAAAACGTTATTTTGAAGTTGATTGCGTTTGGATGAGCTTATTTGAACTTA TCTTATAGTATAAATACTTACACACGCGGTTAGATAAGCTTATGAAAATAGCTTATGAAGTAGTAGCTGTTTTGATTTTA TCTTTATAATATGCTCAAATTAGCTTATGAATACGCCTTATATGTGAGTTTATTTCAATTAGCTTCTCAAATAAGCGCTT ATATCAGTATATGATAAGTGTTTAGTGTCATAAGAGCTTAATTAAGTTGATTATTTAAGCTCATCATGATTTATAAGCTT ATTTGATTAGTGAAGCCCTTCAGGGTATGTATGTGGGTTGTTTGAGACTTTGAGTATAAGCTTAATTAAGCGCTGACAAT AAGTTTATTTGATAAAATTATTGAAATATACTCAAAATAGGTGATAGGTAAGCATAAGCTCTTAATTGTAAACTAATTTG AACATCTTATGAAAATAAGCTCATATAACTTATAGGTAGTAGGCGATAAGCTATTTATCTAAGTTTCCCTAACACTTACA TAAATACATATGCTATAAGATAGTGCCCGAAGGACAGATAAGTGGTAAGAGCTGGGGGACATATGGGTTGGGGAGGGGAA GGGGAGGTCATCCATGGAGGAGCTTATTTGAGTATATCTAATGACATAAACACGTTTAAGTGCTTATTACAATAGCTTAT AACTTAGCTGCTTTGATATTATCTTTTTAACATGCTCCAAAGAGCTTATGAATAAAGCCTTTATATGTGAGGAGTGAGCT TATTTCAATAAGCTTTTCAAATTAGTGTATATGTGATAAGTGCTTAGTGTTATAAGAGCTTAATTTAAGCTGATTACTTA ACGCATCCTTAGTTATAAGCTTATTTGATGAATAAGCTTAAATTAGAATTGAATGCATGTTTACTCACCAGTTAAGACTT GTAGCTTCTATCTAGAATTGATTCTAGAACATTTTACCATGAAGCAAAACATGCTATTAGTAGGTACAAGTGCTTAATTC GTACGATAATTTAAGTAGCTTATGAAAATAAGCTCAAAACAACTTATAAGTAGGTCATAAGCTTATCAAAACAATTGCAG GTTGTGCTATAAAGTTAGTCTTATATACATGGCATATATGTATTTGCGTTATCTTGGGACTTGGGATAACAAAAATAAGA AGAGAAAATATGTGAGAATGTGGGCTGCTTAAAAGATATGTTCTTTTGTGTCGTGCAGATAATTGTTTTGGAAGATAAAA AAGAATATATGGGTTACGACACAAAGGGAGAGATCAAACCACAAGAGATAAAAGCACAAGTTGAAGCAGAAATCAAAGCA CAGGACAGAAGGCCTTTTGATCTTTTGGTATGTCCATCTGCTAACAAATGGAGGCTGCTGAAATGATATTCACAATTTTG TTCTTAAGGCCTGTTACTTCAGTAATACACACGTCATTATTTTAGTTCTCTTGAGGCAGGTGATCCTGAATCCTAAACTA GAGAAGAAGAGCAACAGGACTGCACTGTTTTTTGAAGGGTGCTTGAGGTGTGGCAATCATTTATTAACTATTTGTTCCTT TTTTTTTCTGTTGCCTTGCTTGCTCTTCTAAATTATCCAGTGGGAAGCTTTGTATTTCTCTTATTACTCATTGAAATTTC ACTTTTAGGACTTGTGCATAATCAATTGAATATTTATAATGTCTTTCCAGGCTCTTGATTGATACTCTTGGCCCTTTCTT GAGTATTGGCTTGGAATTTCATGAGATCATGGTCATGCCCTTATTTTTCTAAATTACTCTAGTATGATAAAGAAGACTCT ATAGGATCAATTTAGAAGATGGAGGCACCACAGCAACTTCTACGATATCATTTAATGACTTTCTCTTAAGTTATACCATT ATGTCCATGTATGCTTCCTCTAGAACAAATACCTGAGATTCTGTGTGGTTGAAGTTGTTGATATATCCTTACTCTTTTAT AGTTTATGTTGGCTATAATGTGTAACATCTTCATCTGCCACAACATTTTGCAGTGTCTCAGGATATAGTGCTGTGGTAGA GAGGTACCTTGACGTTGAGGTTACAGGTTTTGATCGCGATGGTGAACCCATCAAAATAAAAGCTTCAGGTTGGCAGGCCC GGATTTTGCAACATGAGTGTGATCACCTAGATGGAACACTGTATGTTGATAAGATGTTACCAAATACTTTCAGAACTTCA AGAAACTGGGATATGCCTCTTGCCCCTGGGTGCCCCAAACTTGGCCCCCGCTAACAAGTTTTTGGTGCATGTTGGTGAAA TTTTGTAGCATGTGATCCAGATGCATTAAGTTAGAAATTTTGTCTCAGTTCGGAAGTAAATTTTCTGTAATATTTGTTGT TCATACTGCAGCAATTGTTACTGCAATCTGATATTATTTTCTGATCAATACACTTCATTTAGGTTTTATTACTCGGGATA TGGATTTTTCATTTAATTTTATAGTGGGTATTCAGTCATGATGTTTAGAGACCGCACGAGACATAAAACAGATTATTGGA ATTTGGTTCGTGTTTGTGCATGAAATAAAC
CDS sequence (LotjaGi3g1v0011000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGCGGTGCAGCGGCTAGCGTGGCGTTTCCGCCCGGCTCCGCCGCTCATGTTCGCACTCGCCAACGGCGTCGCAAC ACCCTCAGCTTGTAGTAGCAGCACCAGCACCGCAGAATCAGCATCGAGCTCGAAACAATGCAGGCCCTTCAACTCCACAG CATCATCTTCTTCTTCTTCTTCATCATCAAAGGCAGGTTGGTTTTCGGGTCTGACATTGCCGAAGGTTGTGAAAGCTGGA GATCCCGTTCTGCACCAGCCTGCACGTGAAGTTGATCCCAGTGAGATGAAGTCGGAGAAGGTGCAGAAGATCATCGATGA CATGATCCGTGTCATGAGGAATGCACCTGGTGTTGGTCTCGCTGCCCCACAAATTGGACTTCCCTTCAGGATAATTGTTT TGGAAGATAAAAAAGAATATATGGGTTACGACACAAAGGGAGAGATCAAACCACAAGAGATAAAAGCACAAGTTGAAGCA GAAATCAAAGCACAGGACAGAAGGCCTTTTGATCTTTTGGTGATCCTGAATCCTAAACTAGAGAAGAAGAGCAACAGGAC TGCACTGTTTTTTGAAGGGTGCTTGAGTGTCTCAGGATATAGTGCTGTGGTAGAGAGGTACCTTGACGTTGAGGTTACAG GTTTTGATCGCGATGGTGAACCCATCAAAATAAAAGCTTCAGGTTGGCAGGCCCGGATTTTGCAACATGAGTGTGATCAC CTAGATGGAACACTGTATGTTGATAAGATGTTACCAAATACTTTCAGAACTTCAAGAAACTGGGATATGCCTCTTGCCCC TGGGTGCCCCAAACTTGGCCCCCGCTAA
Protein sequence (LotjaGi3g1v0011000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAAVQRLAWRFRPAPPLMFALANGVATPSACSSSTSTAESASSSKQCRPFNSTASSSSSSSSSKAGWFSGLTLPKVVKAG DPVLHQPAREVDPSEMKSEKVQKIIDDMIRVMRNAPGVGLAAPQIGLPFRIIVLEDKKEYMGYDTKGEIKPQEIKAQVEA EIKAQDRRPFDLLVILNPKLEKKSNRTALFFEGCLSVSGYSAVVERYLDVEVTGFDRDGEPIKIKASGWQARILQHECDH LDGTLYVDKMLPNTFRTSRNWDMPLAPGCPKLGPR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_NEGATIVE | 1 | 22 | 22 | - | – | |
| Phobius | 1 | 40 | 40 | - | – | |
| Phobius | 1 | 13 | 13 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 40 | 40 | - | – | |
| Phobius | 14 | 22 | 9 | - | – | |
| Phobius | 23 | 40 | 18 | - | – | |
| MobiDBLite | 30 | 65 | 36 | - | – | |
| Phobius | 41 | 275 | 235 | - | – | |
| PANTHER | 49 | 271 | 223 | 7.0E-84 | – | |
| PANTHER | 49 | 271 | 223 | 7.0E-84 | ||
| Gene3D | 71 | 274 | 204 | 2.9E-68 | ||
| Hamap | 72 | 264 | 193 | 26.589 | ||
| SUPERFAMILY | 72 | 256 | 185 | 5.76E-51 | ||
| Pfam | 75 | 252 | 178 | 1.6E-47 | ||
| CDD | 76 | 246 | 171 | 2.64494E-63 | ||
| PRINTS | 106 | 135 | 30 | 8.9E-35 | ||
| PRINTS | 192 | 203 | 12 | 8.9E-35 | ||
| PRINTS | 204 | 222 | 19 | 8.9E-35 | ||
| PRINTS | 223 | 252 | 30 | 8.9E-35 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0011000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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