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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0012200 |
| Transcript ID | LotjaGi3g1v0012200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cytochrome c oxidase subunit 5B, mitochondrial; TAIR: AT1G80230.1 Rubredoxin-like superfamily protein; Swiss-Prot: sp|Q9SSB8|CX5B2_ARATH Cytochrome c oxidase subunit 5b-2, mitochondrial; TrEMBL-Plants: tr|G7IMH7|G7IMH7_MEDTR Cytochrome C oxidase subunit 5b; Found in the gene: LotjaGi3g1v0012200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:1323880..1328551) extracted from Lotus japonicus Gifu genome v1.2.
AGTAACTTCAAAGTTTCTTATCCAAGAGAAATGTTCTTTTGAGCCCATGGGTTGGCTCATGTTAAATAATTGTACACACC ATGCACGTGTCTGGCACGTGACTCACATGCTGATTAGTTTCGTTACTCCCTCACTTGTCTTCCATTTTCATTTCCAAACC AAAGAAAAAGAGCATCTTCTCTTCTCCATTCACTATTCCTGAGAGCTGCTGCATCAAATTCAAAACGTCGTCGTCGTCGT AACCCTCTGAAATCCAAAAACCCTAACCATGTGGCGGAGACTCTTCACTTCTCCTCACCTCAAATCCCTCTCTGCAACTC TCTCTCATTCTCCTCACCCCGGATCCGCCCTCCGATTCGCCGTCGCCGCCCGCTACGTCGCCACCCAATCAGGTATTTTC CGTTCGTTTCCGATTGCATTGCTCATCGTTCGATTTGATTCATTTTTCGTTGGTTGGTTATTGCAGCTGGTTCGATCAAG AAGACGGTTGAGGATGTCGTCCCAATCGCTACTGGCCACGAGCGTGAGGAGATTCAAGCTGACCTTGAGGTAACCCTCTC TTCACCGATCGTGTTGTATATTATGAATCCATTTGATTTCTGTGGTATTTATCTGATTAAACCCTAAATTTGTTTTTCAC TACCTTCAAGTTAGTCAAATACCTAAATAAATCACATATTTGATTTATTTATACTGGGGATGAAAATTGAGGGTTTACTC ATATTTATCCACTTGCACATTGTGCATTTGAGGAAGTTCCTGTGTTAATATCACTGTTTGTGTAATAATAATATAATATC CTTTTTAAATGTGTGTCTTCTGATCAGTTTTTGTGTATTGTTGTGTCTGTTTGTGCTTTTTGGCATTCATTTTAAGGATT TTTGTAATTTCTTTTTAATCTGTTTCTTTTTGTATAGGGAAGGGATATTCTTGAGATAAACCATCCAGAAGGTCCTTTCG GGACAAAGGTTAGTGTTATTGCTTTTCTGTGAAATTATATGCATGCAAAGGTTTATAGTTGTGTGACTTGTGGCATGTCT GTTGTTGCTTGCTGCTGCTTCCTTATGTGTGTGCATTAGAAAAGTGATTCTGGAAAAACATGTTTTTTGAACTTAAAAAT TACTTTTAGATATGTATATTCTAATTGTCTTCTCCATTATGTCCTTTTATTTTTTTCATAGTTCCAGATTTGTAAGGTAG AAAGTTGCATGAATGTTTTTGTAGCCATATTACATTAAAAGATAAAAATGTGAACTCTATTTAATCTTTTTAACATTAGG TTAATATATTTTTAGTGTCAATGCATGACCCCACTCTCAATTTGGTCTCCACACTTCACTATGTTATATATTACTCCAAC TCAACTGATGATACTATATCAACAACAGACAATAAGGACCAAATTGAAAATGAGTTTTTTAAAATTATATCTTATAAAAT TCATAATGTGAAGGTTACATTTTTAGAACGAATAGCACAATCCATAACATTAGCATAATCACTTACTGGTGCCCTAATGC CTATAGAGTTGAATTCAGATGCAATCCTCGGCAGCTTCTTCTTGAACAGGATTTCTACATTGTTGGACAAATATTTGATG TATATATGTATATACTGTTACACGCACACATATACACATACAATTTATATTTATATATATATATATTTATTACATTTGGA GGCTAAGTTGCCAATGTTTGATATTCTTTAGAAGCAATCCTCAGAGAACATAAAGATGCCTTAAAAAAGAAATTAAAAAG GTTGAGGATGTTTGTGTTATAGCTTTTCATGGGTGATAGTGGTAAGTTGTTAGCCAACTTGACAAACTTGTAGCTTAACC TTAATAACTTCATCAAACTTGGTTGTGAAAGATGAAGAGTAAGCATGAGTCTGGAAAACTAGTGAGATTTTAGAGGTTGT TGAGTTTTTACCCAGCCACCGTTTGGGGATTTCCAAACATGAAACGAAAAACGTACTTAAACTATATATAGAGTTGTTGC TCTGCAACTTGGATTAAGTGTGAGGGTCTTCTTCTTCCTCTCATATCAAGGGATCTAATGCCCTTTTTTATATTCAACCG TGATTGGAATGCACTAGTTTCTTAGAAGGTATTTAGTATGTTTTCTATTTTCATTTTTGGTTAAAATTTTTTTGCTAATA ATAAATTTACTACCTAGTTTTTTTTTCCCTACTTTCAAGATTTTGAGAAGGAAATGGTGACGGCAATATTTTTTTTACTT TCTGGTTTTCACTTTCATTGATTGGCAGAGCTAAAGTATTCATGTTTCTTCTTTTCTTCATTTTTCCTTTATTTTAAGTG GAAATATTAGTTTTATATAGTATAGATTCTCATTGTCCTAACTCCTTATGGAGATAATTGTTTTAAAGTATGCTTTATTC ATGTTCGATTCCATTTTTTGTTTTGGTTCATAGGAAGCACCTGCTGTTGTTAGGTCTTACTTTGACAGAAGGATAGTTGG ATGCCCAGGTGGCGAAGGTGGTAAGTGTTTCTTGTCTTTCTTTATGAATCTGATAGAAACCAGAGAAAATGAGAAGTATT ATTTTGTGTGAGACTACAAGTATCAGTGGTTACAATTACCACCACAGCCTACGGCTCATACATAGATTTGTTACATAGAG ATTCTTCTCTGCCACTATGATACTCCTCTCTACCACTATGCCCCCTAATATCACTCTCCCATCCTAACCAACTCATTCAG TGAAATACACATCTGCCCTACTTTTCTTCTTTATTGAATACACCTTTAATATTTTGTGCCTATCACCTGAGCCCAATAAC TGATCACCACAACTCACAGTTCCACAAGAATCTGTGTCAACTTTCACAATCTGGGAAAAATTAATACTGGAATTTGGTGA AAAAAGTTGCTTTTTTCTGCAGAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGCCTCATGAGTGTCC AGTGTGCGCACAGTATTTTGTGGTAAGTTGAGAATCACATTTAAGAATTTTATTGTTCTTTGGAGTTAAATGTCAAGATA TGTTTGTAGATTGAAAATGATCTACTTGTTTGCTTGCATGTGCACAGTTGCACTAACTGCTTACATATTGTCAACTTTCA AGGGCCACTACTTATTATGGACTGCCCCGGTTGATGCGGCTCGTATAAGATCTATTTTTTGACATGCTTTGAGTCCCTTT CTAATATTTCCAGAATCTGCCTTGATAATTTATTGCTTGGTTTTTGCACTTCTAGCATGTTGCCGTGTAAATATGCAGTT CCTATTTTAGCAAGAATCAGCATTCTAAATTAGTGAATGTGGGAAATGACGCGTCTATTATAACAAAGTTTAAAAAACAT TTTTTTGGCATTGATTAGCATTTGAAGCAATTGTTATGAGTTCTGGTCAATGATTTAACCTGGGTATGAACCTCATGAGA ATAAGTGATGATTTAGAATAACTAATCTTTTAGCCTCAGGTGCAATGCAGTGGGGATGGACTTAATTTGAGTTTGAAGTA AATTTTTAATTAACTTGAACCAAAAAATTTGCTGAATTTGATTTGTTACCTTTTGCTATTGTCACCATTCATTACCGCGT CAATGTACATTTGAGCTGGTGTTATGTTTAATTCAGAAATCAGTCCAGTGTATGTCTAAACTAAAAAGACATGCACTCAA GGTACCAGTTAAGTTCAGTGTGAAGAAGCTTTCTTCCTAATTCTGTTTTTTTTTTTTATCTTGAAGTGTGCGTAACATCT GTGTCAACGGATCCAAACACTGAATGGGTACTTAAAATCTCACGGGAACTAATTGTTTTGTTTTTTCGTTTTTTCGTTAC AGCTTGAAGTGGTGGGACCCGGCGGTGATCCTTATGGACATGGCGATCACCATTGATTGCATTGTGCTTTTCCTCAGGAA TAAATGTTTTCAAAGATGAAAGACATTGTTTTACACTCAAGCCTTCAAAGAGGCCTTGTTTTGTTTGGTCTATATACCAT GCGGTTTTGCAACTTTAGAGAGAGTTTCTGTGATTGTTTTGATGCAGGTTGATCATTTCCTTCAGATATTAAATCCTGAT AGGCTGACATTTTTTCTCTGCCAAATAATTGATAGCAACACTAAGATTTTTTAACAGTGCAAATGTGTAGAACCTGAAGT ACTTTGAGTTTTAAGCTATCAAATTCTGTTATTATCTGCCAAATAGTTGATAGCAATACTATGGTTCTTTAGCAATGCTT AAATATGTACAATGGGTGGATGGTTCAAGTGGTATATACTTGAGCAATGTCCCGTGGAGAAATCTCCCATGAGCAGAATA TGTAGATTGTAGAATCTCCGCTGCTTTACGGACCTAAATCATGCAAGTGAGTAAAAGTATACTCGAATTAAAGTATGTTT TGCAAGTTAAGAAAATGAACATTACTCATGCATAAAAGTTTTACACATGTATTAATCATTTCTCCATTTTTATTTTAAAT ATTTTTAAATTTAATTATGACATGATGAATTGATCAATTCTAATTGAATGACTGTATTTACACTTCCATAGAAATTAAAC TCAAGTTATATACTGTTGTCAAAGATGCATAAAGCTATATACTGATCATTCAAAATTAATTTTAGGTTCATCTAAATATA TACAAATTTAACCAAAATTTTAAAATGTTTTT
CDS sequence (LotjaGi3g1v0012200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGGCGGAGACTCTTCACTTCTCCTCACCTCAAATCCCTCTCTGCAACTCTCTCTCATTCTCCTCACCCCGGATCCGC CCTCCGATTCGCCGTCGCCGCCCGCTACGTCGCCACCCAATCAGCTGGTTCGATCAAGAAGACGGTTGAGGATGTCGTCC CAATCGCTACTGGCCACGAGCGTGAGGAGATTCAAGCTGACCTTGAGGGAAGGGATATTCTTGAGATAAACCATCCAGAA GGTCCTTTCGGGACAAAGGAAGCACCTGCTGTTGTTAGGTCTTACTTTGACAGAAGGATAGTTGGATGCCCAGGTGGCGA AGGTGAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGCCTCATGAGTGTCCAGTGTGCGCACAGTATT TTGTGCTTGAAGTGGTGGGACCCGGCGGTGATCCTTATGGACATGGCGATCACCATTGA
Protein sequence (LotjaGi3g1v0012200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MWRRLFTSPHLKSLSATLSHSPHPGSALRFAVAARYVATQSAGSIKKTVEDVVPIATGHEREEIQADLEGRDILEINHPE GPFGTKEAPAVVRSYFDRRIVGCPGGEGEDEHDVVWFWLEKGKPHECPVCAQYFVLEVVGPGGDPYGHGDHH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 151 | 151 | 2.0E-84 | – | |
| SignalP_GRAM_POSITIVE | 1 | 15 | 15 | - | – | |
| PANTHER | 1 | 151 | 151 | 2.0E-84 | ||
| ProSiteProfiles | 44 | 143 | 100 | 22.174 | ||
| SUPERFAMILY | 45 | 142 | 98 | 1.25E-31 | – | |
| Gene3D | 45 | 139 | 95 | 2.3E-31 | ||
| CDD | 46 | 141 | 96 | 8.36286E-41 | ||
| Pfam | 54 | 144 | 91 | 4.7E-18 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Cytochrome-c oxidase activity | Catalysis of the reaction: 4 ferrocytochrome c + O2 + 4 H+ = 4 ferricytochrome c + 2 H2O. | ||
| Cellular component | Mitochondrial envelope | The double lipid bilayer enclosing the mitochondrion and separating its contents from the cell cytoplasm; includes the intermembrane space. |
Expression pattern of LotjaGi3g1v0012200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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