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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0013800 |
| Transcript ID | LotjaGi3g1v0013800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|K7L8S8|K7L8S8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0013800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:1497012..1498519) extracted from Lotus japonicus Gifu genome v1.2.
TTCAGCCGCATCTAATGAGTTAGAGAAGGAAGGAGAGCCATGGAGAATTCCACTCTCCCTGAGGAGTTGAGGGTAGAGGT TCTCTTGAGGTTGCCAGTGAAGTCTGCCGTGCGTTTCAAATGTGTGTGCAAGTCATGGCTCTCCCTAATTTCCGATCCTC AATTCGCTAAAGCTCATTTTGACCTAGCCGCTAAACCCACCCATCGTGTTCTCACTTCATTTAACAATGATTCCCAAATC ACGTCTCTCGCTTTTGAGGGATCACTGACTGATGTCTCTGACAAATTCCCACCTGCACCCTGTAAACTTGATGTTCCTCT CCCTTCTTATGGTCCTCTTGCACTTCAGCCTGTGGTTTCTTGTAGAGAGTTTATGCTTTTAGCCAATGAGTACGGTGAAG ATGTCGTTGTTTGGAATCCAACAACTGGTACTCATAGGCAATTACCAGTCACCTATGATAATCAGACTCTTGTTGGTTTT GGGTATGACAAATCAACAGATGACTATTTGCTAGTTCTTATACGAAAATATTATTGTAAGCAGTGTGTACGCAGGCCTAA GATTATGAATTCGCATGCCCCGCATCCTCGAATTCAGGTTTTCTCATTGAAAACCAATGCACCATCCTTTATTTCTGGTT TTGAATTTGATTTTAAATACGATCCTCCTAATATGGAAGGGTTGTTCTTGAATCAGTCTCTTCACTGGTTGGTTGAATCT AACGCCACACACCTTCCGCTAATTGTTGCCTTTGATTTGATAGATAGAAGTTTATCAGAGATTACTCTATCAAAAGATTT TGTCCAATTGTGGCATAATAAAGATCTTTGTTATCTCACGATACTAGGAGGATGTCTCAGTCTCTACTACTTGGGTTTCC AGTATGAGGGTGCAAATGGTGTTCGTGATCAGATATGGGTCATGAAAGAATATAAAGTGTCGTCTTCCTGGATTAAATGT TTTGTTCTGCAGGGTAACATCAATGCCAAGAAGAACCACTCGTGGCCCATATACTTTTAACCAGAGATGGTGCTCTTCTT GCATCAAGGGGCGATGGATGAATAATGAAATTGAATGAGAATGGAAAAGTGTTAAAGCAACACAGAGATGATGGGCTGAA GGACAGTCACTTTTCACATCATTATATGCATAAAGAGAGTTTGCTACCACTCCCTTAGTTGGTGGAAGAAAATATCTCAA GAAGCAAATGTAAGAAAAAAGTTATTATGCAATCTTCCTTGCACGTTGTGGGAATGGTTCACCTAACCTTCGATCCTAGT TCTCTGCTGGTTTTTCAGGTTATGTTTATCGTTGTTGTAGGTTGGTGGAATCGTCCCTGCTCTTGTGGGCCCTTTGTTGT TGTGCGTCGATGCTTCACCTTTCAGACTTGAAGTTTTCCTTGCCTCTGTCCTGCCTATCGAGTTACTGTAGTTGTTGGTT GTGTTTGTATGTGTGTGTTTGTTGTTATTGTTTTTCTTTTGCTGTTTTCCTGCTCTTTTGTTTTTCTG
CDS sequence (LotjaGi3g1v0013800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGAATTCCACTCTCCCTGAGGAGTTGAGGGTAGAGGTTCTCTTGAGGTTGCCAGTGAAGTCTGCCGTGCGTTTCAA ATGTGTGTGCAAGTCATGGCTCTCCCTAATTTCCGATCCTCAATTCGCTAAAGCTCATTTTGACCTAGCCGCTAAACCCA CCCATCGTGTTCTCACTTCATTTAACAATGATTCCCAAATCACGTCTCTCGCTTTTGAGGGATCACTGACTGATGTCTCT GACAAATTCCCACCTGCACCCTGTAAACTTGATGTTCCTCTCCCTTCTTATGGTCCTCTTGCACTTCAGCCTGTGGTTTC TTGTAGAGAGTTTATGCTTTTAGCCAATGAGTACGGTGAAGATGTCGTTGTTTGGAATCCAACAACTGGTACTCATAGGC AATTACCAGTCACCTATGATAATCAGACTCTTGTTGGTTTTGGGTATGACAAATCAACAGATGACTATTTGCTAGTTCTT ATACGAAAATATTATTGTAAGCAGTGTGTACGCAGGCCTAAGATTATGAATTCGCATGCCCCGCATCCTCGAATTCAGGT TTTCTCATTGAAAACCAATGCACCATCCTTTATTTCTGGTTTTGAATTTGATTTTAAATACGATCCTCCTAATATGGAAG GGTTGTTCTTGAATCAGTCTCTTCACTGGTTGGTTGAATCTAACGCCACACACCTTCCGCTAATTGTTGCCTTTGATTTG ATAGATAGAAGTTTATCAGAGATTACTCTATCAAAAGATTTTGTCCAATTGTGGCATAATAAAGATCTTTGTTATCTCAC GATACTAGGAGGATGTCTCAGTCTCTACTACTTGGGTTTCCAGTATGAGGGTGCAAATGGTGTTCGTGATCAGATATGGG TCATGAAAGAATATAAAGTGTCGTCTTCCTGGATTAAATGTTTTGTTCTGCAGGGTAACATCAATGCCAAGAAGAACCAC TCGTGGCCCATATACTTTTAA
Protein sequence (LotjaGi3g1v0013800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MENSTLPEELRVEVLLRLPVKSAVRFKCVCKSWLSLISDPQFAKAHFDLAAKPTHRVLTSFNNDSQITSLAFEGSLTDVS DKFPPAPCKLDVPLPSYGPLALQPVVSCREFMLLANEYGEDVVVWNPTTGTHRQLPVTYDNQTLVGFGYDKSTDDYLLVL IRKYYCKQCVRRPKIMNSHAPHPRIQVFSLKTNAPSFISGFEFDFKYDPPNMEGLFLNQSLHWLVESNATHLPLIVAFDL IDRSLSEITLSKDFVQLWHNKDLCYLTILGGCLSLYYLGFQYEGANGVRDQIWVMKEYKVSSSWIKCFVLQGNINAKKNH SWPIYF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 46 | 46 | 8.941 | ||
| Gene3D | 3 | 77 | 75 | 4.9E-8 | – | |
| PANTHER | 3 | 312 | 310 | 9.1E-67 | – | |
| PANTHER | 3 | 312 | 310 | 9.1E-67 | – | |
| Pfam | 4 | 42 | 39 | 1.2E-7 | ||
| SUPERFAMILY | 4 | 54 | 51 | 4.45E-14 | ||
| SMART | 6 | 46 | 41 | 2.8E-5 | ||
| TIGRFAM | 106 | 312 | 207 | 3.1E-19 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0013800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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