Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi3g1v0014400 |
Transcript ID | LotjaGi3g1v0014400.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|K7L8S8|K7L8S8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0014400 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:1530780..1532332) extracted from Lotus japonicus Gifu genome v1.2.
CTTCAGCCACATCTAATGAGTTAGAGAAGGAAGGAGAGCCATGGAGAACTCCACTCTCCCTGAGGAGTTGCTGGTAGAAA TTCTCTTGAGGTTGCCAGTGAAGTCTGTCGTGCGTCTAAAATGCGTGTGCAAGTTATGGCTCTCCCTAATTTTCGATCCC CAATTCGCTAAATCTCATTTTGACCTAGCCGCTAAACCCACCCATCATGTTCTCACATCATTTAACAATGGATCCCAAAT CACATCCCTGTCTTTTGAGGGATCACTAACTGATGTCTCTGACAAATTCCCACCCGCACCCTGTAAACTTGATGTTCCTC TCCCTTCTTACGGTCCTCATGCTCTTCGGCCTGTGGTTTGTTGTAGAGGGTTTGTGCTTTTAGCCAATGAGTACGGTCGT GATGTCACTGTCTGGAATCCAACAACTGGTACTCATAGGAAATTACCAGTCACCTATGATGATCGGACTCTCGTTGGTTT TGGGTATGACAAATCAACAGATGACTACTTGCTAGTTCTTATACGACAATATTATTGTAAGCAGTGCGTGCGCAGGCCTA AGATTATGAATTCGCATGTTCCGCATCCTCAAATTCAGGTTTTCTCATTGAAAGCCAATGCACCATCCTTGATTTCTGGT TTTAAATTTGATTTTAAATACGAACCTCCTAATACGGAGGGGTTGTTCTTGAATCAGTCTATTCACTGGTTGGTTGAATC TAACGCCACAAACATTCCGCTAATTGTTGCCTTTGATTTGATAGATAGAAGTTTAACGGAGATTCCTCTATCAATTGATT GTGTCGAATTGTGGCATTGTAAAGATCATTGTTATCTCAAGGTACTAGGAGGATGTCTCAGTCTCCACTACTTGGGTTTC CAGTACGAGGGTGGAGATGGTATTCGTGATCAGATATGGGTCATGAAAGAATATAAAGTTCCTTCTTCTTGGATTAAATG TTTTGTTCTGCAGGGTAACATTAGTGATAGGAAGAACCACTCGTGGCCCATATGCTTATCAAGAGATGGTGCTCTTCTTG CATCAAGGAGAGATGGAAGAATAATGAAATTGAATGACAATGGAGAAGTGTTAAAGCAACATAGAGATGATGGGCTGAAG AACAATCACTTTCCACATCATCATATGTATAGAGAGAGTTTTCTACCACTCCCTTAATTGGTGGAAGGAAATATCCCAAG AAGCGAACACAAGAGAAAAGTTATTATGCAATCTTCCTTACACTTTGTGGGAAAATTCGCTAACCTTCTATCCTAGTTCC CTGCTGGTTTTTCTGGTTATGTTTGCTGTTGTTGTAGGTTGGTGGAATCATCCCTGCTCTCCTGGGCCCTTTACTGTTGT GCACTGATGCTTCACCTTTCAGACTTGAAGCTTTCCTTGTCTTTGTCCTGCCGAGTTACTGTAGTTGTTGGTTGTGTTTT TATCTGTGTGTTTGTTGTTATTGTTTTTCTTTTGTTGTTTTCCTGCTCTTTTGTTTTTCTGGGCTCACTAGGGAGAGCCT TGTTCCCTAGCGTTTGTTTCATCAATAATATTT
CDS sequence (LotjaGi3g1v0014400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGAACTCCACTCTCCCTGAGGAGTTGCTGGTAGAAATTCTCTTGAGGTTGCCAGTGAAGTCTGTCGTGCGTCTAAA ATGCGTGTGCAAGTTATGGCTCTCCCTAATTTTCGATCCCCAATTCGCTAAATCTCATTTTGACCTAGCCGCTAAACCCA CCCATCATGTTCTCACATCATTTAACAATGGATCCCAAATCACATCCCTGTCTTTTGAGGGATCACTAACTGATGTCTCT GACAAATTCCCACCCGCACCCTGTAAACTTGATGTTCCTCTCCCTTCTTACGGTCCTCATGCTCTTCGGCCTGTGGTTTG TTGTAGAGGGTTTGTGCTTTTAGCCAATGAGTACGGTCGTGATGTCACTGTCTGGAATCCAACAACTGGTACTCATAGGA AATTACCAGTCACCTATGATGATCGGACTCTCGTTGGTTTTGGGTATGACAAATCAACAGATGACTACTTGCTAGTTCTT ATACGACAATATTATTGTAAGCAGTGCGTGCGCAGGCCTAAGATTATGAATTCGCATGTTCCGCATCCTCAAATTCAGGT TTTCTCATTGAAAGCCAATGCACCATCCTTGATTTCTGGTTTTAAATTTGATTTTAAATACGAACCTCCTAATACGGAGG GGTTGTTCTTGAATCAGTCTATTCACTGGTTGGTTGAATCTAACGCCACAAACATTCCGCTAATTGTTGCCTTTGATTTG ATAGATAGAAGTTTAACGGAGATTCCTCTATCAATTGATTGTGTCGAATTGTGGCATTGTAAAGATCATTGTTATCTCAA GGTACTAGGAGGATGTCTCAGTCTCCACTACTTGGGTTTCCAGTACGAGGGTGGAGATGGTATTCGTGATCAGATATGGG TCATGAAAGAATATAAAGTTCCTTCTTCTTGGATTAAATGTTTTGTTCTGCAGGGTAACATTAGTGATAGGAAGAACCAC TCGTGGCCCATATGCTTATCAAGAGATGGTGCTCTTCTTGCATCAAGGAGAGATGGAAGAATAATGAAATTGAATGACAA TGGAGAAGTGTTAAAGCAACATAGAGATGATGGGCTGAAGAACAATCACTTTCCACATCATCATATGTATAGAGAGAGTT TTCTACCACTCCCTTAA
Protein sequence (LotjaGi3g1v0014400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MENSTLPEELLVEILLRLPVKSVVRLKCVCKLWLSLIFDPQFAKSHFDLAAKPTHHVLTSFNNGSQITSLSFEGSLTDVS DKFPPAPCKLDVPLPSYGPHALRPVVCCRGFVLLANEYGRDVTVWNPTTGTHRKLPVTYDDRTLVGFGYDKSTDDYLLVL IRQYYCKQCVRRPKIMNSHVPHPQIQVFSLKANAPSLISGFKFDFKYEPPNTEGLFLNQSIHWLVESNATNIPLIVAFDL IDRSLTEIPLSIDCVELWHCKDHCYLKVLGGCLSLHYLGFQYEGGDGIRDQIWVMKEYKVPSSWIKCFVLQGNISDRKNH SWPICLSRDGALLASRRDGRIMKLNDNGEVLKQHRDDGLKNNHFPHHHMYRESFLPLP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
ProSiteProfiles | 1 | 46 | 46 | 10.531 | ||
Gene3D | 2 | 97 | 96 | 2.2E-9 | ||
PANTHER | 3 | 372 | 370 | 7.5E-70 | – | |
PANTHER | 3 | 372 | 370 | 7.5E-70 | – | |
Pfam | 4 | 42 | 39 | 6.3E-9 | ||
SUPERFAMILY | 4 | 127 | 124 | 3.01E-15 | ||
SMART | 6 | 46 | 41 | 3.3E-6 | ||
TIGRFAM | 106 | 313 | 208 | 1.1E-18 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0014400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…