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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0015100 |
| Transcript ID | LotjaGi3g1v0015100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box/kelch-repeat protein family; TAIR: AT1G80440.1 Galactose oxidase/kelch repeat superfamily protein; Swiss-Prot: sp|Q9M8L2|FBK30_ARATH F-box/kelch-repeat protein At1g80440; TrEMBL-Plants: tr|V7C1B3|V7C1B3_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0015100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:1604621..1607201) extracted from Lotus japonicus Gifu genome v1.2.
GTCTTTTACTTTTATTCTCAACAATTTTAAAAAATTAAAACCAACACCTATTCGTTCCTGCCATTGCCATGGGCCATACC TGTTTGCTTTTAAATGCTCTACCCTAGTTGTCCCATTTGTCTTTGCCAGTATCGATTCTCAAAACCTTCTAGAACACCCA ATTTTTTATTTTATTTTCTGTCCTTTAAATAATTCAAAACTTATCTCCAATACACATCATCCCATATCCACTTTCTCTAT ATAACACTTCCTTTCAATCAAACCTTCTTCATAAACCTCAAAAAATCTCTTATTCTCTTCACTCTTCTAGCTACCAAAGC TTTGTAAAACCAGAAACACAAACACAAACACAAACACCCCATCAATCAACTTTTTGTGATTTCATATTTAAGGTTCATGG GTATTCACTGATTCAGCTAAATATATACATACACCCTTTTGATTGTCTTTGTCAATTCAAGTGTTGTTGTTTTCTGCTAC CATGGAGTTGATTTCAGGTCTTCCAGAGGATGTAGCCCGGGACTGTCTAATCCGGGTTTCATACGAGCAGTTTCCAGCCG TCACCGCCGCGTGTAAAGGGTGGAACACGGAGATTCAGTCACCGGAGTTTCGCCGGCGGCGGAGGGTCACCGGAAACACA CAGAAAATCCTTGTCACGGCTCAAGCCCGGTTCGATTCAGACACATGCGGTGGTTTGCTAGTAAAAGCTACAACGAACCC GGTTTACCGGCTCAGCGTGTTTGAACCGGAAACCGGTAACTGGAGCGAGTTAACCATGCCACCCGAATTCGACTCGGGCT CGGGTCTACCCATGTTCTGCCAGATCGCGGGTGTCGGGTATGAACTTGTTGTCATGGGCGGGTGGGACCCGGAGTCATGG AAAGCCTCGAATTCCGTGTTCATCTACAATTTTCTATCCGCCACGTGGCGACGTGGGGCCGACATGCCTGGTGGGCCCCG CACATTCTTCGCGTGCACGTCGGATCAAGATCGAACGGTCTACGTTGCTGGCGGACACGACGAGGAGAAGAACGCGCTCA AATCCGCGTTAGCATATGACGTGGCAAACGACGAGTGGGTCCCGCTTCCTGACATGGCGAGGGAGCGCGACGAGTGCAAG GCGGTGTTCCGCGGCGGCGCCGGGAAGCTCCGGGTTGTTGGCGGCTACTGCACGGAGATGCAGGGGCGGTTTGAGCGGAG TGCGGAGGAGTTTGATGTTGACACGTGGCAGTGGGGTCCGGTGGAGGAGGAGTTTCTGGATTGCGGCACGTGTCCGAGGA CTTGCTTGGACGGTGGTGATGCAATGTATATGTGTAGAGGTGGTGACGTGGTGGCGTTGCAGGGGAACACGTGGCAGACG GTGGCGAAGGTGCCGAGTGAGATTCGAAATGTTGCGTGCATGGGAGCGTGGGAAAGGTCATTGTTGTTGATTGGGTCCAG TGGGTTTGGGGAGCCTCATATGGGCTTTTTGTTGGATCTGAAGAGTGGTAAATGGGCTAAACTTGTGAGCCCACAAGACT ACACGGGCCATGTTCAATCTTACTGCCTTTTGGAGATATAAGATGAAGGTGAATTTGGCCGACATGCCGACAAAAGTGTT AATTCTCTCATCGCGGATGCTTGATGGCATCAAGCGTTAAACATTGGCCACGAGATGTGCTTCATTACAATGATTGATGA CCGAATTGTCTGACTCGTGGTTGAAAGATGAGATGAGCAATCACCATGCTACCTCTTGTGTTTGGAGGATATAGGACTTA GTTTTTGTATCCTATAGCACTCTGTTTGTGTATATATGAACTATGAAGCAACATTTTTGTTTCTCTAGTTGCCTTGCTTG TTCCTGAGAATTAGAGTATTTTGCTTTAATTATTCAAAGAGTTGTGTGGAATGTGAAATCTGTATCCAGAGTGCTCACTT CTTTGAAAGGAGGTAAAATGAACAGATGTTGAAATATTAAAGGAAAATTGCGTACACGGAAGGAGAAAATTACATGAGAT GAGAGCATGTGCTTGAACTTCATTAACGGTTTGCTTGAAATGGAAAACTAGTCTATCCTTTTCAAATTCTTTGGTCCCAT GTACCAATCAAGAATATGATATGACATGAGATGACACCAATATGTGGAACACCACAAATTTTTTGAAAACAATAAGAGAT AAAGAGATAGACATGATAAGGCTGTAAACACACAACATTACTGATAAAATTAGTATGAAATTGGCATAAAAGATGTAAAT TTCAATAAAACTTTGAGAACCTATGTTGAGTATGTAAAAAAATCTAACACTAAAACTACTGACAATTTCATTGGAGTCAG ATAGGTGCGGAGTATTGTCCCTTTCTTACTTGTTTTTATGGTGGTGCTTGAACGTTTTACTAATTAAGTATCTTCACATG GAGTATGTTATGGTTTATGCCTTTATGGTCCATGTTCCTATACCACTAATTAACAGACTTATCTAGAGACTAGGACGTAT GCAAATAAATTATTTAATTTTATAAAGGAAATTTAAATAAGTTTCTAGAAGTTCAGTATCTTCACATGGAGTATGTTATT TTTTCCTCTTGTAAAAAAAAA
CDS sequence (LotjaGi3g1v0015100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGTTGATTTCAGGTCTTCCAGAGGATGTAGCCCGGGACTGTCTAATCCGGGTTTCATACGAGCAGTTTCCAGCCGT CACCGCCGCGTGTAAAGGGTGGAACACGGAGATTCAGTCACCGGAGTTTCGCCGGCGGCGGAGGGTCACCGGAAACACAC AGAAAATCCTTGTCACGGCTCAAGCCCGGTTCGATTCAGACACATGCGGTGGTTTGCTAGTAAAAGCTACAACGAACCCG GTTTACCGGCTCAGCGTGTTTGAACCGGAAACCGGTAACTGGAGCGAGTTAACCATGCCACCCGAATTCGACTCGGGCTC GGGTCTACCCATGTTCTGCCAGATCGCGGGTGTCGGGTATGAACTTGTTGTCATGGGCGGGTGGGACCCGGAGTCATGGA AAGCCTCGAATTCCGTGTTCATCTACAATTTTCTATCCGCCACGTGGCGACGTGGGGCCGACATGCCTGGTGGGCCCCGC ACATTCTTCGCGTGCACGTCGGATCAAGATCGAACGGTCTACGTTGCTGGCGGACACGACGAGGAGAAGAACGCGCTCAA ATCCGCGTTAGCATATGACGTGGCAAACGACGAGTGGGTCCCGCTTCCTGACATGGCGAGGGAGCGCGACGAGTGCAAGG CGGTGTTCCGCGGCGGCGCCGGGAAGCTCCGGGTTGTTGGCGGCTACTGCACGGAGATGCAGGGGCGGTTTGAGCGGAGT GCGGAGGAGTTTGATGTTGACACGTGGCAGTGGGGTCCGGTGGAGGAGGAGTTTCTGGATTGCGGCACGTGTCCGAGGAC TTGCTTGGACGGTGGTGATGCAATGTATATGTGTAGAGGTGGTGACGTGGTGGCGTTGCAGGGGAACACGTGGCAGACGG TGGCGAAGGTGCCGAGTGAGATTCGAAATGTTGCGTGCATGGGAGCGTGGGAAAGGTCATTGTTGTTGATTGGGTCCAGT GGGTTTGGGGAGCCTCATATGGGCTTTTTGTTGGATCTGAAGAGTGGTAAATGGGCTAAACTTGTGAGCCCACAAGACTA CACGGGCCATGTTCAATCTTACTGCCTTTTGGAGATATAA
Protein sequence (LotjaGi3g1v0015100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MELISGLPEDVARDCLIRVSYEQFPAVTAACKGWNTEIQSPEFRRRRRVTGNTQKILVTAQARFDSDTCGGLLVKATTNP VYRLSVFEPETGNWSELTMPPEFDSGSGLPMFCQIAGVGYELVVMGGWDPESWKASNSVFIYNFLSATWRRGADMPGGPR TFFACTSDQDRTVYVAGGHDEEKNALKSALAYDVANDEWVPLPDMARERDECKAVFRGGAGKLRVVGGYCTEMQGRFERS AEEFDVDTWQWGPVEEEFLDCGTCPRTCLDGGDAMYMCRGGDVVALQGNTWQTVAKVPSEIRNVACMGAWERSLLLIGSS GFGEPHMGFLLDLKSGKWAKLVSPQDYTGHVQSYCLLEI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 359 | 359 | 3.7E-171 | – | |
| PANTHER | 1 | 359 | 359 | 3.7E-171 | – | |
| SUPERFAMILY | 3 | 49 | 47 | 7.85E-5 | ||
| Gene3D | 59 | 355 | 297 | 9.2E-31 | ||
| SUPERFAMILY | 77 | 341 | 265 | 4.84E-38 | ||
| Pfam | 116 | 156 | 41 | 1.0E-9 | ||
| SMART | 121 | 169 | 49 | 3.0E-5 | ||
| Pfam | 159 | 205 | 47 | 2.9E-8 | – | |
| SMART | 172 | 219 | 48 | 2.2E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0015100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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