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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0016600 |
| Transcript ID | LotjaGi3g1v0016600.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Late embryogenesis abundant hydroxyproline-rich glycoprotein; TAIR: AT1G52330.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; Swiss-Prot: sp|Q3AAU7|PLSY_CARHZ Glycerol-3-phosphate acyltransferase; TrEMBL-Plants: tr|A0A076L4S1|A0A076L4S1_CICAR Late embryogenesis abundant protein; Found in the gene: LotjaGi3g1v0016600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:1735823..1737698) extracted from Lotus japonicus Gifu genome v1.2.
GAAACACAGTTACACCAAAAACAAAAAAAAGGAAACACCGCCACAATTTCCATCATACCAAAACAAAAACAATAATACTC ATCTTCTTCAATCAATGAACTTCAATCACATTGCAATACACACTGTGAAGAAGAAGAAGAACAAAAACCATGTCAATCTC AAAATTGAAAGCTTACACCAATCTCCTCTGCCGACGCAACCACCAAAACAGCGTCGTTTTCACCACGCGCCGCCGTCAGG TGACATGCACGGCGGGGATCCTCCTCTTTCTGACGACGGCGTACATTTTCTGGCCGACGGATCCCGATCTGAAGATCGTG CGGCTGAAGCTGAAGCGGATCAAGGTGCATCGGTTTCCGCGCGTGACGGTGGACATCTCCATGATCCTCACGCTGATGGT GAGCAACGCCGGCGTGTACTCCATGGATTTCGGCGCGGTGGACGTGGTGGTTGCGTATAGGGGGAAGGCGCTGGGGCACG TGACGTCGGAGCACGGGCACGTGAGTGCGAGAGGATCGTCCCACGTGGACGCTGACGTGGAATTTGAGGGGATTGGTGTG GTCCCTGATATGGTGATGTTGCTGGAGGACGTGGCTAAGGGTATGGTGCCCTTTGATACTGTTAGTGAGGTTAGGGGCCA AATGGGGCTTCTCTTCCTTCACTTCCCAATGCAGGTAATTTATGGCTATCAATTACATTGATTAGTATATTTTATTGAAA GAAATGAAATTTTCATTGATTAATATATTTTTTGGAAAAAAAATAATATGAAAATCGGACCGGTCAGTCTAACCTATTGA GTTGGTCATCAAATAAGCAATTGGTAGTCCATTTACATAAAAATCTCTATAGATCTCGAAACTTGTAATCAACTGATCGT ATCATGTTAAAATCAAAGAAAAATTAACAAAATCGGTGATATTGAATTTAGCTGAAACAATTTTTTTGGATTATAAGAGG AAGATGAGCTAAAACAATTTGAAACGATAATTTAGCTCATAAGAGAGGCTTTATGTGCAATTTCTATTTCTAGTCGTTTG TTTTTGTCTTAATAAAGGTATCTCACAGTTAATAACCTTGAAATTAATTTTTCATATCACGGTTAACGTATTAAGCGATG ACGGTCGGGAGTTAAAGTTTTTCTTTCTTTTGTTTTTCTACTTTATTTATTTAATATTTGGTTCAATTTTCTTCCTATTG AACTATGAGTGGTGTTGGTCATTGAACTGAAATGGCCCAGAAGAGAAATAGGGAAACTAATTCCTTAATTTGTAGAACTT CCACATGAACAATTTATTCTGTTGATGCTGCATGCATGCTCCATCTTGTAATAATATGATAATACCCCCAACAGGCAAAA CAATCATGTGAAATTTTGGTCAGTACATTAAACCATACAATTATTCGCCAACATTGTCTTCGCGAGGTAAGCTTTCACTT TGTTTAATTACAATTTGATGGTAAATATGTCAATAATTGTACTTAATTATATTACTAAATATGTTTGTGATTTTACTTCA GTGATGAACTCGAGAGCTAGCCAAAAACCGCACAAGGTCTGCGAAGTTAAATGTCAATTATCCCTCTCTCCATGTGTATG TTTTTGTTACATAGGAAAAGCTCTCTCCATGTGTATAATTATTTAAGTTATTTATAATGATAATTATTTGTAAATTGTAA ACTATGAGGTGGCTGAACGTGAAGATATTAGAATTATCTAAAATAAATTAGGTTACAAGAATTGTTACAATAAATTGTTA TTTTTTTAGAGTAACTCAAATTAGGTTACAATAAATTGTTATTTTTTACTTTTTAACAAAAACATACAACATGATGATTA GGAAGTGGTTAATTTGAGTGTGATCTATATTTGGAC
CDS sequence (LotjaGi3g1v0016600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAATCTCAAAATTGAAAGCTTACACCAATCTCCTCTGCCGACGCAACCACCAAAACAGCGTCGTTTTCACCACGCG CCGCCGTCAGGTGACATGCACGGCGGGGATCCTCCTCTTTCTGACGACGGCGTACATTTTCTGGCCGACGGATCCCGATC TGAAGATCGTGCGGCTGAAGCTGAAGCGGATCAAGGTGCATCGGTTTCCGCGCGTGACGGTGGACATCTCCATGATCCTC ACGCTGATGGTGAGCAACGCCGGCGTGTACTCCATGGATTTCGGCGCGGTGGACGTGGTGGTTGCGTATAGGGGGAAGGC GCTGGGGCACGTGACGTCGGAGCACGGGCACGTGAGTGCGAGAGGATCGTCCCACGTGGACGCTGACGTGGAATTTGAGG GGATTGGTGTGGTCCCTGATATGGTGATGTTGCTGGAGGACGTGGCTAAGGGTATGGTGCCCTTTGATACTGTTAGTGAG GTTAGGGGCCAAATGGGGCTTCTCTTCCTTCACTTCCCAATGCAGGCAAAACAATCATGTGAAATTTTGGTCAGTACATT AAACCATACAATTATTCGCCAACATTGTCTTCGCGAGGTAAGCTTTCACTTTGTTTAA
Protein sequence (LotjaGi3g1v0016600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSISKLKAYTNLLCRRNHQNSVVFTTRRRQVTCTAGILLFLTTAYIFWPTDPDLKIVRLKLKRIKVHRFPRVTVDISMIL TLMVSNAGVYSMDFGAVDVVVAYRGKALGHVTSEHGHVSARGSSHVDADVEFEGIGVVPDMVMLLEDVAKGMVPFDTVSE VRGQMGLLFLHFPMQAKQSCEILVSTLNHTIIRQHCLREVSFHFV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 28 | 28 | - | – | |
| PANTHER | 22 | 198 | 177 | 1.2E-72 | – | |
| PANTHER | 22 | 198 | 177 | 1.2E-72 | – | |
| Phobius | 29 | 48 | 20 | - | – | |
| TMHMM | 31 | 50 | 20 | - | – | |
| SUPERFAMILY | 38 | 145 | 108 | 2.48E-5 | – | |
| Phobius | 49 | 68 | 20 | - | – | |
| Phobius | 69 | 90 | 22 | - | – | |
| Pfam | 82 | 174 | 93 | 4.9E-6 | ||
| Phobius | 91 | 205 | 115 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0016600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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