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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0017900 |
Transcript ID | LotjaGi3g1v0017900.1 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Dynein light chain family protein; TAIR: AT1G52245.1 dynein light chain LC6, flagellar outer arm-like protein; Swiss-Prot: sp|Q94748|DYL2_SCHMA Probable dynein light chain; TrEMBL-Plants: tr|A0A059BUK3|A0A059BUK3_EUCGR Uncharacterized protein; Found in the gene: LotjaGi3g1v0017900 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:1886257..1886953) extracted from Lotus japonicus Gifu genome v1.2.
TTCAACTTTAGGAGAAGATGTTAGAAGGAAAAGCTTTGATTGAGGATACTGACATGCCAGCTAAGATGCAGATCCAAGCT ATGGCATCTGCTTCTGAAGCTCTGGATCTCTATGATGTTTTAGATTACAAATCCATTGCTGCCCACATAAAAAAGGTAAC ATTTTTTCTCTCCTCCTTGTATGATAAACAAAACATCTAAAAATTTCAGCATCAATGCATGTATGACAGTCACCAATTTA AGAATTTGTCTAACCATATATTAAAAATTAATTAATATCATAAAAAATTTAGTATCTTTCTGGATATATCTTAAAACTAA TTTGAGTATATTTTTTCTATAAGATAACATTAGAACAAGTCTCTACTTACTTGATTGTTGCCTGAATTTATGGTTTCTTT GACTGGTAGGAGTTTGATAAAAGATATGGTTCTGGATGGCAATGTGTGGTGGGTTCAAGTTTTGGGTGTTTTTTCACCCA TTCCAAGGGAACTTTCATATACTTCACTCTGGAGACTCTCAATTTCCTCATCTTCAAAGGCCAGTAACAGAAAAAAAAAG TGCAGATTTTTTTCCTTTATCCTCTTCTCCACCTCTGTTCTTAGTTCCCTGGCCCTTTTAAATATGGTAACAACATGGTA GGTTAGGAGTTTATATAAGGAGCAACTCTTGAATCATTAGTGAATGGACCCTTGTAA
CDS sequence (LotjaGi3g1v0017900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTAGAAGGAAAAGCTTTGATTGAGGATACTGACATGCCAGCTAAGATGCAGATCCAAGCTATGGCATCTGCTTCTGA AGCTCTGGATCTCTATGATGTTTTAGATTACAAATCCATTGCTGCCCACATAAAAAAGGAGTTTGATAAAAGATATGGTT CTGGATGGCAATGTGTGGTGGGTTCAAGTTTTGGGTGTTTTTTCACCCATTCCAAGGGAACTTTCATATACTTCACTCTG GAGACTCTCAATTTCCTCATCTTCAAAGGCCAGTAA
Protein sequence (LotjaGi3g1v0017900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLEGKALIEDTDMPAKMQIQAMASASEALDLYDVLDYKSIAAHIKKEFDKRYGSGWQCVVGSSFGCFFTHSKGTFIYFTL ETLNFLIFKGQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 89 | 89 | 3.3E-55 | – | |
SMART | 1 | 90 | 90 | 1.0E-42 | ||
PANTHER | 1 | 89 | 89 | 3.3E-55 | ||
Gene3D | 1 | 90 | 90 | 9.7E-32 | ||
SUPERFAMILY | 1 | 90 | 90 | 3.66E-31 | ||
Pfam | 5 | 89 | 85 | 7.9E-32 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Biological process | Microtubule-based process | Any cellular process that depends upon or alters the microtubule cytoskeleton, that part of the cytoskeleton comprising microtubules and their associated proteins. | ||
Cellular component | Dynein complex | Any of several large complexes that contain two or three dynein heavy chains and several light chains, and have microtubule motor activity. |
Expression pattern of LotjaGi3g1v0017900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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