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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0018600 |
| Transcript ID | LotjaGi3g1v0018600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Plant cadmium resistance 2; TAIR: AT1G52200.1 PLAC8 family protein; Swiss-Prot: sp|Q9M815|PCR8_ARATH Protein PLANT CADMIUM RESISTANCE 8; TrEMBL-Plants: tr|I3T5L5|I3T5L5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0018600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:1951685..1956463) extracted from Lotus japonicus Gifu genome v1.2.
GCTAAGCTTAAAACGAAGATATGAACTAAACCTAAATTTATATTCTCTCTCTCTCTCTTGACTTAATTTTTTTATTTTCC AGTACTTCTCGCTTAAGTTTCATTTAAATTTTAAGAATTTAGATGCATTCACATTCACATTTTTCTCTATCTCATTTTCA CACTCTTCTTTTTTCTATCATATTATCTATTATGTCTCACATTTTTCTCTGGTGTACCCATATATCTTATAAGTGGAAGT GAATATAAAGTGTGTATGCATTATTTTTAAAGTAATAACACAAATTAAAAAATGTAGTCAATGTTCATATTGATATCAAA ATTGTTCTTCTTTTAATTTCTTATATATATTTTCCATTTCTTGTTTTTATAATTTTCTCTTATTAATTAATTAAGCAAAA AAAATGCCATGTAGATAAGAACAAAACTTTAATCAATATTTAAGATCATGAAGGATGTACAAATCGTCTTGTCCTAAATT TATACCAATATCCTCTAGCTGTTTGAATTCCAGGATTCAACTGAAAGCATTACATAAGCAAAGCTAGAGTTTATTTATAT TAGTTCTAGGCTTCTATCACTGTTTAAAAAAGGTGAGATATGCCGAACGATCAGGATCAGAGGACTCAACAGAATGAACC CGTTGGCTCAAGGTATGAAGCAAATACAACTCAGCAAGTAGGGAAGCCATGGAGTACTGGACTATTTGACTGCCATGAGA ATCAGACAAATGGTAATATCAGCTCATGCTAGTTTAATTTCGTTGAACTAGTTATATAGCTAGATCATTTCAACCTCTGC TAAAAATTAACCTTGATGAAATTTGAAACAAGTCTATCATGAATAAACCTTCACTTTAATCTCTAATCTTGACAAGATTT TTCATATTAGATTCTTTGCTAAAGAAGCACCATCATTGGCCTATATTTCTATTGGTTACATTTGCGCTACTTAGACCCCG TAGCTTATTTGAGCTTATCTCGTAGCTTAAGCGCTTATGTAAGTATTTTAGAGAACTTCTGTATATAGCTTATGGGTTAC CTATAAAATGTTTTGAAAAACTGCTCATACTAGCTTATGAATAACAGCTTATGCTTATCCATATCGCATTTTCAGATTAT TTCGATAAGTTTCTTAAATTAGCTTATGGATAAACACTTATGCAATATGCGCTTATAGTCATCTCTTAAGCGTTTAATTA AGCTGTTTACCCAAATTCACCCTTTGCATTTGGAAGAGCTTATTTGAGTTTATCGTAAACATAAACATAACAAGTATTCA AGTAAGCTTATATGAAAATAGCTTATGACTGATTTATAAGTTGTATTGAGCCTATTTTCATAAGTCGTTCAGATCAGCTT ATGAATAAACGCTTCAACTACCTAAAAGTTATTTTGAGCTATTTCAATAAGTTTATGAAGTTAGTTTATGAATAAGCGCT TATGTGAGAAGCGGCTAGTCATTTGTTTACCTAACATACCCTTGTACTTCAGTCAATCACAACCCTATCAGTTGAGCTAA TCCTCAATGGCCAGGAGATCAGAGTCTTACTTCTGGTTTAGTCATCTTTTGAATCAACAGCTGAAATCCTGTTGAAATTA TTACATAACTCTTGAACTCAGGGACTGTTTCAGTTCTAACCTCAGAAATCTTTCTATATTTTGATTTCAATGTTCTAAGC CTGCTACACCTTTTTTTATGAATAGTCTAGTGTTTCAACTTGATATACACTGGGGCATTATGAGCTCATGTATCCATGTG AATGATTATACCTTGGAAAAAGGCTTGTTTGATGATGCTTGTTGTCTAGTATTTGAATTGTGCATACTTGAGAATAACAG CTTATTACTTGCCAATCACATTTTGTTTTTCTGATAAAAAGTATAATATGCAGGATGATTTATCTAATTACATATGCTTT TTTTGGGTTGGCAGCTGTTATGACATCATTTTTACCTTGTGTACAATTTGGGCAGATAGCAGAAGTATTGGATGGTGGAG AACTGAGTAAGGATCCTTACCCTTAATTCTCCATTTATTTGTTTTTATAACAATTTACCTCTACTACATACAACTCCATG TGATTAATTTGCACATTCAAATCAAATGTATAGCTGTAGTACTTGTACCTCATGTGTACCAGGGAAACTCAAGAATCTGT ATTGTGAAAAGTTCTATCATAATTCTACAACTTCAAGCGTGTTTGGATCCACGTTTAAACCTCACATAATCACTTCTCTG CGCACAAAAATGACTCCTAGTAGTTTCTTGCAGATCACTTTTCTCCCCAATAGCATCTATAGTTTCATGATTAACCTTTT AGAATCACTTTTCTCTCAAAAAAACAAAAAAACAAAAAAAACTACTAGGAGTATATTCTCTCGGAATCACTTCTTCCCCA ACGTGAAAATCTACCGAGTTTCCAAACATACACTTTGTGTTTCTCAAACATGCTCTGATTATTAATTCTAATCATTTCAG GTTGTCCTTTGGGAAGCTTCATTTACCTACTAATGATGCCTGCTTTGTGCACTCAATGGATCATGGGGTCAAAGTACAGA ACAAAGTTGAGGAAGAAGTATGATTTGGTGGAAGCTCCATATTCAGATGTGATCTCTCATGTCTTTTGTCCATGTTGTTC TCTCTGTCAGGAGTTCAGAGAGCTTAAGATTAGAGGACTTGACCCTGCTCTTGGTAATTGACCTCCTCCTCCTCATTTTT ACTTTTTCATTTTTATATTGAAGATTGACAATGACAGCTATAGAAACACTTTTGACTAATATAGCATGTTTCAATCGGCT TATTTTTTTCTTGTCTGTGTGCAGGATGGAATGGAATTCTTGCTGAACAACAGCGTGAAAGACAGCAAAATGGTCAAACA TTGAATGATCCTCCTTCAAACCAAGCCATGTCCCACTAAACACAGTTCTTGTGTTTCTTTTGGTGTTCTTCGTTGTTGTT GGTCCATTGGTGCAAGTTCTCCTGTTTTAGGTTCTCGTCTGTCAGTTGACCTCTATTGGTGGAGGTTCTCCGGCTTTAGG TCCCCTCTTCCGCAAAAAAATGTATTTCTTTTGATTGGTTTTGTTTGAATGTTTGATGCTTATAATTGAATTGTAAGAAA ACAAATAAAGCTCTGCTCGATTGAAGTTTGGTAAAATTAAGTTTGAAAGAATGAATGTATTTGGAAATAATGTGTAAAAA TGAGTTTAAAAATAATGAATGATTTTGCACTTTTTTTTTAGACTGAGAATTAGACACCAAACGGGGACATAGAATTTCGA TTCGGGACAAGATTTGCTTAGTTTATTCGCTTTACTTGTTATTCACCATATTCACTCATACTATTAGGCTTCTTATTTTC ATCTTAGCAAGAGAAACATTAAATCCTGAACTCAATGCTAAGTTTTCATTTCATCACTCCCTCTTAGCACATGCCAACCA CTTCTTCCTACACTTTGCAATGGATCCAGGAAACAATGTCATAATTTATTGATTTCTTTTCACCAATTGCCCATGAATCA GAAACTATGACATGCTATTCAGTTTTGCTCTTAGTTTAAACTTTATTGCGTGATACAACTGAGTGAACTGACATGCAGTC ATGCACACAAACAATGGATACTAGTTTCAAACATAACTAAAATTACTTTAGATTCATGGAAGTACCTGCTAGTCTGCTAC AGAAGCAGAACCTAGAAAAAAAGTTACCCACAAATTGAGAAGCTACTCACAGAAGCTTCTCAACAGAATTAATTCCGACA ACATAATCAATTATTGAAGGGTTTTCAAGCATGCACTAAGTGAGCAGTTATCTAGGATTCAGAATTTGTTCCCCATTGGA ACCTTGCTTTGCCTCCTCTGGCTCACAGTGAACATTAGTATTATTCCCTTGTTCAGCTTCTGCACTTGGTCCATAACCCC AACTACAAACCAAATAGTACAGCATGTTAACAAAACTCATCATGGTAAGAAGCCAGTAAAACTTGTCATAGTGACCCTTG TTGATATTATCTGAGACCCAACTTTGTTTTCCCCCTCTGGAAGTAATGTCATCCACAATCCTGAATATCATAGAAGCCAC CAAGTTTCCCACAGCATTTCCAAGGCTGAAGAGGGAAGCAGCAATGCTTGACATGCTGCTTGGAAACTCGGAGTAATAGA ATTCTGATTGGCCTATTGCATTGAATGCTTCAGCCATACCAGTCAAAACATGATGCAGGATAAGCCACATTGCAGACATG TTCAACACTGCTTGAGGATCATCAATGTACCCTTCCTCAACTGCTCTCCTTCTCCTTATGGTTTCAATAACTGCTGAAAC TACAAAGTCCAGAAAAGAGAAAAACAGCCCAATTCCTATTCTCTTTTTCGCACTGATAGAAACTGATTTTCCTCTGAGTT TTGATGCTAGAGGGAGGATCACACGATCGTAGACGCCCGCAGTTATGAATACTGACACCATTGAGAAGAGACCAAAAGAG CCTGCAGGAATTTCGAAGCTTGGAGTGATGTGTCTGTCCATAGTTTTAGCTTGGAGCAACCGAAATGAGGTTTGGCTAGT GCTTACTGATATCATGATGCTGGAAGACCAAAGGGGAATCACTTTGATGATGGCTTTTAGTCCTTCCACTTGCTCTATTG TACAAAGACTCCATGTGCTTGAGGCTGATCCATCAGAGGCTATATCTTTTTCTCTATCTTTGATGATGCAAGCTTTATTC AGAAACCTAAAACTCAAAGAATTACCTGGTGTTAGTCAGGATGCCTTTGAGTAAACACC
CDS sequence (LotjaGi3g1v0018600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCGAACGATCAGGATCAGAGGACTCAACAGAATGAACCCGTTGGCTCAAGGTATGAAGCAAATACAACTCAGCAAGT AGGGAAGCCATGGAGTACTGGACTATTTGACTGCCATGAGAATCAGACAAATGCTGTTATGACATCATTTTTACCTTGTG TACAATTTGGGCAGATAGCAGAAGTATTGGATGGTGGAGAACTGAGTTGTCCTTTGGGAAGCTTCATTTACCTACTAATG ATGCCTGCTTTGTGCACTCAATGGATCATGGGGTCAAAGTACAGAACAAAGTTGAGGAAGAAGTATGATTTGGTGGAAGC TCCATATTCAGATGTGATCTCTCATGTCTTTTGTCCATGTTGTTCTCTCTGTCAGGAGTTCAGAGAGCTTAAGATTAGAG GACTTGACCCTGCTCTTGGATGGAATGGAATTCTTGCTGAACAACAGCGTGAAAGACAGCAAAATGGTCAAACATTGAAT GATCCTCCTTCAAACCAAGCCATGTCCCACTAA
Protein sequence (LotjaGi3g1v0018600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPNDQDQRTQQNEPVGSRYEANTTQQVGKPWSTGLFDCHENQTNAVMTSFLPCVQFGQIAEVLDGGELSCPLGSFIYLLM MPALCTQWIMGSKYRTKLRKKYDLVEAPYSDVISHVFCPCCSLCQEFRELKIRGLDPALGWNGILAEQQRERQQNGQTLN DPPSNQAMSH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 23 | 23 | - | – | |
| Phobius | 1 | 71 | 71 | - | – | |
| PANTHER | 5 | 169 | 165 | 4.3E-87 | – | |
| PANTHER | 5 | 169 | 165 | 4.3E-87 | ||
| TIGRFAM | 30 | 131 | 102 | 1.4E-29 | ||
| Pfam | 31 | 129 | 99 | 6.1E-24 | ||
| Phobius | 72 | 91 | 20 | - | – | |
| Phobius | 92 | 170 | 79 | - | – | |
| MobiDBLite | 151 | 170 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0018600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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