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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0019000 |
| Transcript ID | LotjaGi3g1v0019000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Auxin-responsive protein; TAIR: AT4G29080.1 phytochrome-associated protein 2; Swiss-Prot: sp|Q9ZSY8|IAA27_ARATH Auxin-responsive protein IAA27; TrEMBL-Plants: tr|G7IUP2|G7IUP2_MEDTR Auxin-induced protein; Found in the gene: LotjaGi3g1v0019000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:2006109..2013535) extracted from Lotus japonicus Gifu genome v1.2.
AAAAAGAATTAGCTTTTTTATTCCTTTTTATTTTGGTATAGGAGAAGGAAAAGTTTGCTACAGAAAGGCCTAGGAAGGTT CTTTTCTACATCAACAAAACCAGCTTCTCCCTTCTGGACTTCATTCATATCAATATCACACCATAACTTCTGTTTGAGCT CTGCTTTCTGTATACTCTGTTCTTCTCAAGTTTTCTTGTTTCTTTATCTATCTATCTATCATACATAACACACTACACTA GTTCAAACTTGTGTTGCATACCTGGGATCCTTGCATCTTTGTCATTTTGATGTCTCCACCATTAGAGCATGACTACATAG GCTTGGGAGAGAAGCCATCAATGGTTGGAACCTCTGACAACAAGATATCTTCATCATCTCTCAACTTCAAGGAGACAGAG CTGAGGCTTGGCCTTCCTGGTTGTGAGTCTCCTGAGAGAAAACCTGCAGGTGCTTCTTCTGGGGTTTCCCTTTTTGGCAA AGACTTGCAAGAGAAAAAGCATGGTCCTTTGAAAAGCCCTGTGGCTGCTGTTGGAGCTAAGAGGGGCTTCTCTGATGCCA TTGATGGGTCTTGTGGGAAATGGGGTTTCTCTGTGGCTGATGGATCTGAGGTTGAGTTGGGAAAAGGTGCTGCTTTGTTT TCTCCAAGAGGGGGGAATGTTGGGAAGCCTCTTGTTGCTTTAGAGACTCAAACTAACACCACACCAGCCATCAATGAGGT TGCTATGGCTCATCAATCTGCTAAACCAGCTCAGGAGAAGAATAAGCAGGTTGATGGTACAAATGAGCATGCTAGTGCTC CTGCTGCAAAGTAAGTTTGCATCTTGCTAATCTTTTTTACTACAACTTCTAGCATGTTTGCATAACTTGTTATGGGTAAC TTCTCACAAAATTGATTTTGTTTTTAGAATTAATTAAAAAAGAATTTCCAAACTTGTTATTTCCTGTTCAATTTATTCTC AACATCTTGTGCTTACTGGTATAATCAACTGAGTAAAGAAGTAGATTAATAAACAAGTTTGAGTTACATGTTATGTTATG ATTGCATGGACAAAGATGGAAGATTACTCGATGTTTGGAAACTCTTCTACAATTCATTAAAAAGCTAGAATGAATTCTAG GGAGAGGCAGAAGCTATTATCTCTAGCTTCTACATGAATTAGAATTGATTTTATGCTTGAAATAAATTTCCTGAGATGAC TTCCAAACGTATATTATGTCATCCAAAAGTGATTTTACTCGATAAAAATTAATTCTGAGGATCTACTTCGTGGAATCAAA CATACACTGAGTAGCTTCTGTGTTTCATAATTGATTCCGATGGAAGAGAAGTTGATTCAAACATGCCTATGGTAGTATGG TGTTTCAGTTAGATATAATGGCTAATACAAAAATTAAGGTCTTCCATTTGGTTCAAAATGTAGGGGCTGATGAATATTTG CCTTTATGATAAAGGTTTTATATTGTAGTGATTACTCTTGTTTATTTTTCATTGTGACTAATGAAGTGCCAATTTTTTTT GGCAACAGGGCACAGGTTGTGGGATGGCCACCAATTAGATCGTTTAGAAAGAACACAATGGCCTCTAATTTGACAAAGAA CAATGATGAAGCTGAGGGGAAGCCAGGGTTTGGTTGTCTCTATGTCAAAGTCAGCATGGATGGTGCCCCTTATCTCAGAA AGGTTGATCTCAAAACCTACAAAAACTATATGGAATTTTCTTCAGCCCTTGAGAAGATGTTCAGCTGCTTTACCATTGGT ACTAACTCTATCTTCTTCAAAATCCTTCCTATTAGCTGCTTATAGTTATATCTGCGACACTATGGTTCAATTTGGATTTG TTCGGTTTTGGACATGAGAACTGAAAACCAAGCTAATCCATTGGTTTTTTGGTTCGGCTATTGCAGTTTAACTAGGTCTG GCTCGGTTTATGAACAGCCCTAGTGACTAGCTATTAGAGAACTCTTTCTTTTACCTTTTTTGGGATCTGAATGTGCTAGG GAGAAATTCAAATTCAATTTTGTAGTTGCTAAAACTAAAAATAAACACTTAAGTCACAATATTTCTAAGCTGCTTCTTTA GCCACAATATTTCCTTTTGAATTCTTCAACCACTTTGCTCTATAACTTTTCTTATTCTGGAAATTAGGTCAATGCAATTC TCCTGGACTTCCTGGGAAAGATGGACTAAGTGAGAGCTCTTTGAGGGATCTTCTCCATGGCTCTGAGTATGTTCTTACAT ATGAAGATAAAGATGGAGATTGGATGCTTGTCGGGGATGTTCCTTGGGAGTAAGTTATTTCTTGTCTTGCCATAAATTCT TAAAGATCATTTTTTGGTAGAATGCCATTTTTGGATCAAAATAGTTCAGAGGATAAACTTGTTAACTTAAATATCTTGTT GATGCAGGATGTTCACTGACTCATGTAGGAGACTAAGGATCATGAAAGGCTCCGAGGCAATTGGGCTAGGTATGTCATCA TCTTATTTTAAGCACCCATTCCTTCTGGTTTACAAGTTTCGATTCTTGTAAGTGCATGTTTGGATACAAAGTATATTTTC ACATTAGAAGAAGAATTGATTCTGGGAGAAGCTACTCATAGTAGCTTTTGTGATAGCAGAATTGGTTGAGAGATTTGAAT GCAGATCCAAACATGCTATAAGGAAGTTGTAAACCAATTTTTGCATTAGCACTGTCCATTAGGTATGTGTCCAACTATAA ATTCAATCTCAACTATCTTGGTTGCAGCTCCAAGGGCCATGGAAAAATCAAGGAGCCAAAACTAGTGCAGGAAAACCAGT TGGCTCAAAGTGAGGTGTTCACTAAAGCATATAGTTTTACAAGGGAGTTTGAGTTTATGATTTTGTTCCAAATCAAATAC TATATATATGTAATTCAGTGAGGTTTTGTGCATTTATTGTCTGCCAAGTTCTCTATCAGTGGAATTTAACTGGAGAGATC CAGTCAATATATACACATTTTGGTTGTTTCTCTGTTCTGTGTATCTGTGGATTCTTGTTGCTGTATAAAAGATTTGCTTG TGCTTTTTCCTCTACGGTCTACTACTATTCATTCATTTTCTACATGTATTCTTAATATATACACACATCAATTTGTATTG ATATTAAAATGTTAATCATATCTCTTTGGCTTATGGTGTAGTAAGTCCCGAAAATAAAATGGGAAATTTGCAAGTTGTGC TATCTATGTTAAATTCTGTACTTCTTACATATTTCAGACGTTGCTCTTCACATCCAAAAATGCACGTCTTACTCCTTAGA AGTAACAGAACATGTGGGATAGAATATCGAATCAAAGAAAATTAGTGAATATTGACGGAAAACAAGTATATGCATCTGCA ATGTCTTCATTCTGATCATCAACCAAAATTCATTAGGTATCATTATTAACCAAGTGAAGTCCAAAATGCCACAAAACTTC ACTAACATTGGTAGCAAGCATTGTCAAGTTGAAAAAGGATTCGAAGAGTGCCACAAAAAAGTTCCTTAACATTTGTAGCA AGCATTGCCAAGTTGAATAAGGATTTGAAGAGTGCATTTAGGGGTGTACAAGACTGGACTCAGTTCATTAACCCGTTTTG GCATGAGTCCATCAAACCTGCGGCCCATCAGGTTTCTTCGAGTCTAGGGATGAGTTCAAGTTCAAAAAGCTGGTCTGGTC AATATTTAGGGCCAGGTGAAAGACAAACATGACTCATCTCAACCCGTCTCATAAACACTCATAGTAGAAAAGTGTTGACC AAAATAAAAACACTCATAGTAGAAAAGTGTTATATATTGCAACCAAACAACTGAAGATAACAGTCTAGTATTATGTTTGA AAATCGGATTGATTGAATAATAATATATAAAGTAAAATACCAACTTAACAATGGTTTGTAGTCAATAAGTGTAATATAAG CCTGAACTTGTGAGACTAAAAATACTAATATGAAAGATTACTGATACATGGAAGTTGGCAATCAAGTTGGCCATACATGA ACAAGTAACTACCCAAAATTAGAAAGAACTGAACAGTGAGTTAAGATGATTTGCTTGAATTTCAAAAAGGAAAAGTGGAA GAAGAATAAAAGAACTACATCTTAAAGCCAAATCAGGCTGAAGCAACAACTCATACACAATACAGGTACAAAACTTCCTT CAACTACAGCATACCCTTGTCAAAGCAACTCTAAATCATTGTTCAGATATCTGTAAATAAACCATCTGAGTGTATCCATT AAATACAGAATTGTCAAGGTCAGCCAAACCAAGCCTTCGGAACAAACCATACCTCCCATCTTCAACAATAGGGTTTGGTG TGCGAGCGGGATCATATCTGGTTTGATGAGTGAGGGAAGGACCAGCTACTGGAGGGAGTTCCCAGTACACATCAAGAATA GATTCAACATACCTGCTATTCTGGAAATGTTGGGCATAAGTTATTGGCTTATTACTGTGATTGAAGTTATCGCGCATGAA GCCTCTAACTCCCCACCATGCTTCCCCTGGCCCACATAGTTCTTCCATATCAACTGCTTTCTCCCAGAATTGCTTCCTTC TTGACCTGATCCTTGCTTCATCACTGTCTTTAAAGCAACTGTGTCCCCCGCCTAAGATTGATAAAAGAACAAAACAAAAG TGAATTTCATTAACAGGGTTAATAAAAACAATGCTTGTGATTCTTATTGCTAGTAGAATAGCATATTAAAAGTTCAAAAT AGAAAGGAGCAACTTGACGCCAACATAAAGATAATCACCACTTGTATTATTGAACCAACCAAACATTTTCCAACAATTGA ATGCTGAACTTTGGCAACATCCCCGAAAATTTGCAACCAAAACTACAATTGAGAAAGCTTTCTAGTGTCGAGGAAATCAC TTATGACATCGATAAGAGCAGAACTCAGATGTAAGTACTAATTACACATCTTCTGCTGCTTTCCTGAATTTTTTATATAG TTTCTAACCTCATTGTCTAATATAACACCTCAGTCCCTCCCCTGAAGTACAATATTTCATCAGTCTGGCTGGTCAAAGCC CATCCAGAATGATAAACATATCACACTTGTGTGACTAAGTCGAGGAAATGCAACACCGATGAATGTAAATAATATAAGAT ATCCTTGCATTTCTACTTGAAATCCAGAAGAAAAATCAGCAGATCATTTCAATTCAATAGGAAAGTACGAGTTCACATAC CTCTTATATAAAATTGATCACATATCTGCCTCAATGAATAATGGTCACCAGTTCCCGTGTCATAGTTATCCTCAAAAACA AGGTGCCGGAACCCAGCTTTTAAAGCTTGTTCAATTCTGCCCATTATGACAAATACAAAATAATAAGGATAAGCAAATAG CAACTTCATCGTAAGTACTCAACTATTGAATCATATATCTCAAGATCTTGTTAGTCACCTTTTCAGTTCATTTTGATGGT CATCGAAAAATATAAGAACCCGACTAAGGTCTGAAATCCCATGTTTCTTCATCACTGTTGGCCAGTCAACACTTCCAAAA TCCACAAAGTCTTTTCCGGCATAATATGTGCAGTTACCATCTACATAGGCAGGTCCTTTTTTCAGATACTTTTCTGGATG CCTAGGGGAAAGAGAAAGAATATGCGTGTCAGGCATGGCCTGCCTCAAAACCCAAGTTGAATGCCCCTTGAAAGCACCAC TCTCGATCATCAGGTCCGGCTTCAGCCATCGTGCAATAAACCAAAGCCCAAAGCTGTGGTCAAAACCCATCCCAAACATG TTGTTTTTGATTGGCCGGGTTTCATATATGGGAACAAACTCTTCTAACGCCTTAAGCAGATCTTTCGATGTCCATTCTAC AGTTTTACCATGTTTCGATCTGCCTTTACCAAGGATAAGATTATAAGTATCCAACAACAATGAGCTGTAAGTAAGACTTA ATGATTTCAAACTTAGACACTAGCAATTTGAAACAATAAGAAATGAATTTACCAGCCCACTACTCACAATATTAGCATTA AATCTCCGCAGACTACTAAATTATTCAGATTCGAACCGGGTATCTTATTAGAAAGAAATAGGGATGAACCTCAATAACAA AGGTAGAAACACTGCAGAACTTAAAGGGTCTACAAACCTCCCTGCCTTAAGTCACTAATTCTCACTCAAATGATCAGATA CCTGTCCCTCTCAAGACCCTCTTCTTAATTACAGGCCTACATGCTTTAATTCCGTAATTATCTCAGCCACCATCTAACTA CCTAACTCCCTTACTAAGGGCTATTAACTCCCTTACCTAAAAAGTATTCAAACTAACTAACTAGGGGGTTATCTTACCTA AATTATTCTCTCCAATTCTCCACAGTCAAACACTTCACACTTCATTGTTTGAAGGGAGTGGGGGTTAATAAAGAACATAG AAACCCCTGAACAAACCAACATTTTACTCTCAGCTCAACCCGAAAGCGTTAACATGATGAGCTCATTCCTTAAATAGTGT AGTCTGGCCCAAAAAACACTTCATGAATTTATGCTATCTGATTAAAATAACAATATTAATAACAATAATACATCCAAATC CAAATTGCCATCATTGAACAATTGACTAGCTTAATATATACACTACTTACTAGTGATTTTCATCAGCATTCAAATGAACC CTACAATAATGCCAAACCCAGAATAACCCTTCAACCAATGAAGCAACACAATATGGAATTCACAACCATTCAGGATCAGG ATCCGAAAATACTCAAAAATCGAATCAACAAAAACCCATTATCATTTCCGATGCTTTAACATTCCGATCGATCCAAACGA AACCCAAAGAACCCAAAAAATCAGAAAGCGATCATCAGATCAGAGCAAAAGAGACTTACACCATGGCACACCGAGGACTC CAAAATCGGAGTCAAGGCCATCGAGGCCGAAGAATCCAGCACGAGAAACAGGCTGATAAGATGACGACGAGATGCAGACG AAACCCGCACGAGATGAGAAAACGAACGACAAGGCCAAGAGGAGAAGGAGGACGACGGCGACACAGGGAAGGTAGCTGCC GCTGGAGGCGGCGGCGATCCGGGAGAGGTAGTTGCGGAAGAGGAGGTGCTGGTGCTTCTTGGTCTTGGATTCGTCGGTGG TGACGCCGTCGTCGTCGTCTTCGCCGGGAGGGTTGCCGCGGCGGGAGGAGAGTGAGCGTTCGAGCATGGTGGCGGCGGAG ATGTTGGGGTGGCGGTGGGTGGGGGTGGTGCTCTGTGGCTGAGTTGGCTGAGTGTGTCGCGGTGAGAGCTTTGGAGATGA TGACATAGCGTGTGTGTATGTGTGTGTTTCTATTTATTGTTTTTATTTATTGTTTTTGTTTTTCCCTTGTTCTTGGGACA GGGGGAGTTGGGTTTGGGCCCCCCTATGGGGCTCCGCGCCCCACCTCTTTTTTTTTAACCCATAAAT
CDS sequence (LotjaGi3g1v0019000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTCCACCATTAGAGCATGACTACATAGGCTTGGGAGAGAAGCCATCAATGGTTGGAACCTCTGACAACAAGATATC TTCATCATCTCTCAACTTCAAGGAGACAGAGCTGAGGCTTGGCCTTCCTGGTTGTGAGTCTCCTGAGAGAAAACCTGCAG GTGCTTCTTCTGGGGTTTCCCTTTTTGGCAAAGACTTGCAAGAGAAAAAGCATGGTCCTTTGAAAAGCCCTGTGGCTGCT GTTGGAGCTAAGAGGGGCTTCTCTGATGCCATTGATGGGTCTTGTGGGAAATGGGGTTTCTCTGTGGCTGATGGATCTGA GGTTGAGTTGGGAAAAGGTGCTGCTTTGTTTTCTCCAAGAGGGGGGAATGTTGGGAAGCCTCTTGTTGCTTTAGAGACTC AAACTAACACCACACCAGCCATCAATGAGGTTGCTATGGCTCATCAATCTGCTAAACCAGCTCAGGAGAAGAATAAGCAG GTTGATGGTACAAATGAGCATGCTAGTGCTCCTGCTGCAAAGGCACAGGTTGTGGGATGGCCACCAATTAGATCGTTTAG AAAGAACACAATGGCCTCTAATTTGACAAAGAACAATGATGAAGCTGAGGGGAAGCCAGGGTTTGGTTGTCTCTATGTCA AAGTCAGCATGGATGGTGCCCCTTATCTCAGAAAGGTTGATCTCAAAACCTACAAAAACTATATGGAATTTTCTTCAGCC CTTGAGAAGATGTTCAGCTGCTTTACCATTGGTCAATGCAATTCTCCTGGACTTCCTGGGAAAGATGGACTAAGTGAGAG CTCTTTGAGGGATCTTCTCCATGGCTCTGAGTATGTTCTTACATATGAAGATAAAGATGGAGATTGGATGCTTGTCGGGG ATGTTCCTTGGGAGATGTTCACTGACTCATGTAGGAGACTAAGGATCATGAAAGGCTCCGAGGCAATTGGGCTAGCTCCA AGGGCCATGGAAAAATCAAGGAGCCAAAACTAG
Protein sequence (LotjaGi3g1v0019000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSPPLEHDYIGLGEKPSMVGTSDNKISSSSLNFKETELRLGLPGCESPERKPAGASSGVSLFGKDLQEKKHGPLKSPVAA VGAKRGFSDAIDGSCGKWGFSVADGSEVELGKGAALFSPRGGNVGKPLVALETQTNTTPAINEVAMAHQSAKPAQEKNKQ VDGTNEHASAPAAKAQVVGWPPIRSFRKNTMASNLTKNNDEAEGKPGFGCLYVKVSMDGAPYLRKVDLKTYKNYMEFSSA LEKMFSCFTIGQCNSPGLPGKDGLSESSLRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCRRLRIMKGSEAIGLAP RAMEKSRSQN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 28 | 28 | - | – | |
| PANTHER | 21 | 328 | 308 | 9.2E-144 | – | |
| PANTHER | 21 | 328 | 308 | 9.2E-144 | ||
| Pfam | 35 | 321 | 287 | 2.9E-92 | ||
| Gene3D | 205 | 325 | 121 | 1.1E-43 | – | |
| SUPERFAMILY | 210 | 311 | 102 | 1.47E-20 | – | |
| ProSiteProfiles | 210 | 312 | 103 | 25.847 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi3g1v0019000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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