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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0021800 |
| Transcript ID | LotjaGi3g1v0021800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Auxin-responsive protein; TAIR: AT3G16500.1 phytochrome-associated protein 1; Swiss-Prot: sp|Q8LAL2|IAA26_ARATH Auxin-responsive protein IAA26; TrEMBL-Plants: tr|A0A0L9UP30|A0A0L9UP30_PHAAN Auxin-induced protein; Found in the gene: LotjaGi3g1v0021800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:2342195..2347214) extracted from Lotus japonicus Gifu genome v1.2.
TGACTCAGACCAGAAGGAAAAAGAGAAAAAGATTACAAACTTAATCAATTTGACCAAAGGTTGATTACATATTAGGGAGA AAATCTTTAATCTTTAGTTAACTACATTGCAGGTCACTTTCTTTCACAGAAGTAATAAATAAAGGAGTTTTTTTGGGTAG TGGTGGTAACGAGGCATAGCAGCTATAAGGCAATAGGAGGCAGCAGAGAGAGTGTGTGTCAAAGACAGTGAAGCAAGCAG CAGCAGTAGTATAGTATCTCTAGGGAAGGTCAGAACAGAATGCTTTACTTGCTGTGCTAAACAACCTCCCTAACGTTTGT TGTTATTTTTCATGTGAGAAAGCTCTGGTTGGTTGCGTGCATTATGCTCTAATTCCGTTCCTGTTTTGTGTTCCTTGTGT TGGCCAAGGTGGAATGGAATCTCTCTGGTTTTTATAACTCTGTCCCTCTTTTTTGCCTCTTCTGAAATAACCCCCCACTC TCTTTCTCTCTCTCTTTCTCCCTTTAAAAAGAGAGAGAACCCACTCAGCGTGCAAATAAAAAGACTTAAAGCAAAGCTAG TTTACAACCCCATGCTATTATAGCTCCCTCTACTACACCTTTGCTTTTGGAGTCATTTTTTCTTGGTGGGGTTTCTGTTG AGCTGTGATAATATTTCTGCTTCTCAAATCTTAGTCTATTCAAAACCTTTGAAGGTTTATTGTAGTTTGTTTAGTTTCTC ACCTACCTAAGGTTGAAGCTTCTGGGAAAACCTGTTTATTTTTCACAGCTTAAAGAAGTGGTGTTCCATGGATTTGAGCT GTGGTTAGACCTTGAAGGGTATGTGAACAGAACTGAGCCTTCTTCTGTAGTACTATCATTTAGTACTGTCTCTACTAACT ACTAACTATTCATCTCTTGTGTGCTTTTGAAGGAGTCTCTTGTTTACACCTTTTGTTGATTCTAACATGTGGTTTTGTTT TGTTCCTCAGGTTTTGTTGCATTTATTTGGTGAATATCAAGAAGAGCAGAAAAGGGTGTTTTTCTTTGGAGTTTCTTTTG CAAAACTGTGTTTGTTTTGTGGTTTAAAAAGATGGATGAAAGGTCAAGGAATGAGGTTTCTCCTCAGCTGCTGGATTTGA TTCCAAATGAGAGAGAGTGGCACATGAAAAAAGGTGAAGGAGGAAAGTCCTCAGAGGAGAGGAAGCTGGAGCTGAGGCTT GGTCCACCTGGTGTTGAGGACTGGTCCCTCAATGACAAAATGAAAAACACTCAAACAGATCATGAGTCTCTACTCTCTCT TGGTTACTACTCTCCCATGATGCCTCATTCAGCAAAACTAAGCTCCAACAATGGTTTCCATAGCTACCAACACCACCACC AGGGTAGTAAAGCTACTTCATTTCTTCATCATACATCATCACAAACCTGTGGCCCTAAGGTGGTAGAGTTGCAGCAGAAC AAGGGTAGTGATAATAACAACAAAGTGTTCTCTTCTCCCTCTTCTGCAAACACAGCTGTACCCAACAGCTCTCAGAAAAG GTACTCCAGCTTTTCCATCTACGTTTTGTAACTTTAAGACAGAGGATATTCAGTTCCCAGAGTCCCACACACACTGTGTG GTCCAAGCAAGTTCTGCTGTTTCTTTCTAGTTGAAATAGATCTAAATGTTTTGAACCCTGGTTGCACTTTTTTATGCAAG GGGTTAGATATCAAGTTCTCCAATATTAATTACCTTATGCCTTTTATGAACTTGCATATCCACAAAAAGAAGGGGCAATT TTTAAGCTTTGATCCCCTGTACCATGTACTGGCTTTTTTTGTTCTGTTATCCTTCACTTGCCATGTTTTTCCATGTTTCC TTCTGAGATGTCTACATCGTATTTTTGATGCTATCTGTCATTTATTATGTTCCTTCATTATCTAGTTTTCCTTGTTGTTT GGCATTGGCATGTGAATACCTGACCCTGTCTCAGTTTCCCTTGTTCTCTCTCCTTCCTTTGATTACTTTCTTTGGTCCCT CTTGGGGAAAAGGCCACTTTTGCTTGTTGGATTTAATGAAAATGTGTACAAGTAGTCAAAATGAGAATTGGATGAGTGAT TGCTGGGTTATGCTAGTTTAGCATGCTCTTTATAGGGAAATGACTTAACTACTACACTTTGAGAAAAGAGTAAAGTATTG AATAAGATATATGACATCTGAAATTAAGCTAGAAATAGGCATTGAAACATGGGTCTATGAGATGTTTATACTCTTTGTAG GGAAATGACTTAACTACACTTTGAAAAAAGAATATATTAATGAATAAGATATATGACATCTAAAATTAAGTTAAGAGATA GGGAGAGAAACATGGGTCTAATGAGATGTTTATACTCTTTGAGTGTCATAGTGCATGTGCATGTTTGGATGCACGATGTA AAACTTTGTGAAGTTAAAATCACGGTGAAAAACCACAATTATTATGATCACCACTCACTATGATTTTTTATGTGTGTTCA AACATGGACTAAATATAGCCACTTTTTATCCCCACCAAACCTTTTCTTTTTGAACTTTTAAGCCTGTTCTTGCAAGTTTC ACTGTTCATTTGTCATGCCTAACTCTTTACATGACCCCACCAAACACAGAACTGCCCCTGGTCCAGTAGTGGGTTGGCCT CCAATTCGTTCATTCAGGAAGAATCTTGCTAGTAGCAGCACTTCTTCTAAGCCTCCTCCTCATGAGTCCCAGAACCAGCA TGATAAAGGTGATGGTAAAAAACCTGTTAACAACTATGGTAAAGGCATGTTTGTGAAGATCAACATGGATGGTGTTCCAA TTGGGAGAAAAGTGGACCTCAATGCCTATGGCAGCTATGAAAGTCTCTCCTCTGCCGTGGATGCGCTCTTTAGAGGTCTC CTTGCAGGTAATTTTTGTGACCTTTAATTCAATGATTGTGCTCATTTGGTCAATACGGTCAATTTCATCACAATTCTTTA TTCTCTTTATATTTGATTTGAATGCTTGGTTTAATTTAAATGCTTGATATGATATTTTATTAATTCTGTGTTTGAATTGG ATTTTTTTTAGAATTAATCCTGACACACAAAGCTACTCACATAGGTTTCTCCTTGGAGTGATTTTGGCTTCCAAATGTAG AAGGATTACCTACTTAAACTTGTTTTTTAGTCATAGGTACCCCATGAATATAATAGATCTTCGATCTCTTTAGGTTCCTT TTTTGTCTCACCAATTAAATTGTGTCACGTACACGGAAACATGACAACCTTACATGAGTGGTTTTGACATGCAATTTAAT TGGTGGAATAGAGAATGAGACACTAAATGAAAATTTCAGCTCTACCCCACTTGTGGCTTAGATCCTCTCTATTAACATGG CCACCAGAGAGAAATCTTTGCAGGATAAAATATTTTTCTTCCCTTCCAACATATTTTAAACGGTTGAGATCTCTCTAGTA GTTATGTCACTATAGAGTACTCAGTCCCACTCAACTAGTGAGGATGATATTAAATTCATGACTAGTTATTTGCTTGGGTG TTGGCTACATGAATTCAACATTAAATGCTTAAGGTCAATCATGTTTACCAAACAAGTTCATTTCAACAAAAAAAATGCCA AAAAAGTTTTCTAATGCAAAATACTTCATTGGTCCTTTAGACAACTTTGCTTGAATTTTTATCCCCATGTTTAAGGTCAT TTCTAGATTAAGATAATGTAACTTGATACAAAGATGAAGTAATCTTATTTTGTCTTTTTCACTGGTGTTCAGCTCAACGA GATGCCTCTGCTGGTGGAGTTCACAACAAGCCAGAGGAAGAGAAAGCAATTACAGGTTTATTGGATGGTAGTGGAGAGTA TACTCTAGTTTATGAAGATAACGAAGGAGACAGGATGCTTGTTGGTGATGTACCGTGGCAGTAAGAATCTTATCACTGTT GATCTCATGCACTATTATTGTTAATTTTGTTCAATATTTTATATTGTATTGATATATTCCATTGCCAAATTAGCATTTTG TTCTAAATATGCTTAGAGATTAATTAGATTCCTTGTGCTTAACAATTATTGTATAATAAGTTTTATCCAACAACCTTTAT GCTCAGTGTTGGAATAAATCCGGGGCACTAGATGCCATGGCATGTCTGTTTTTTTCCACATGAGAACACTTGTCCTCCTG TCCCCTCCTAGAAATACAAACAAAACTAATTAATAACTCATGCAGATTTGGCTTTTCCCTTTGGTTCTGCTTCTTTTTAT TTTAACAAGATTTAGTTATTGCTAGAAAACTATGATTGGCAACAAAGACATCTATTTACATTGGTTTTTGTTTCTTTTTA TGTCTGTTTTTGGCAGCATGTTTGTATCAACAGTGAAGAGGCTGCGAGTTTTGAAGAGTTCTGAGCTTTCTGCCTTTACC TGTGAGTTGGAATCTTTGGTTTAATCTTATGTTTATGTTTTCCCTTACCCTTGTTGTCTTGTTTTGGTTTTCTGTGATTG ATGATTTGAAAAAATGTTCTTGTTTTCAGCTGGCAATAAGCAACACCACACCACTTGACTCAGCAATGAAGTGAAATTAA GGCCTTTTACTTCACTGCATCAGCTTGAAGATATTTCTAATTTTGATGTTTTTGTCTGATGAAGGTCATGGAATGAAACT AGTGGCCTACATTGCTATCTAAGTAATGTGGATGAATGAATGTGTTTTAATTTTTTGTAATGAAGATGAAGATTTGAAAT GTTTATGGATTGTATAAATAGGGAAGAAAAACTTCACAGATGTGTGTACACTCATGATTTACCTTTGATGAGTAACCATT AACTCGGGTTTTGGTTTGTACTTTGAACTTAAAGTCCCTTGTTGATGGGGTCTTTTTTTATCTGCCCTTTCAACCTGCAA AACAATTTGCTTTAGGTGAATAGTTCTCTCAAATTTTAGTTTAATACTACCTCATGTCCTATCAGAACAAAATGAGAGAT TTATCTTTATCCTTTTTATAAGAACCAACTTGAAATTAAAAAAAAAAAATTGATTTATGG
CDS sequence (LotjaGi3g1v0021800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGAAAGGTCAAGGAATGAGGTTTCTCCTCAGCTGCTGGATTTGATTCCAAATGAGAGAGAGTGGCACATGAAAAA AGGTGAAGGAGGAAAGTCCTCAGAGGAGAGGAAGCTGGAGCTGAGGCTTGGTCCACCTGGTGTTGAGGACTGGTCCCTCA ATGACAAAATGAAAAACACTCAAACAGATCATGAGTCTCTACTCTCTCTTGGTTACTACTCTCCCATGATGCCTCATTCA GCAAAACTAAGCTCCAACAATGGTTTCCATAGCTACCAACACCACCACCAGGGTAGTAAAGCTACTTCATTTCTTCATCA TACATCATCACAAACCTGTGGCCCTAAGGTGGTAGAGTTGCAGCAGAACAAGGGTAGTGATAATAACAACAAAGTGTTCT CTTCTCCCTCTTCTGCAAACACAGCTGTACCCAACAGCTCTCAGAAAAGAACTGCCCCTGGTCCAGTAGTGGGTTGGCCT CCAATTCGTTCATTCAGGAAGAATCTTGCTAGTAGCAGCACTTCTTCTAAGCCTCCTCCTCATGAGTCCCAGAACCAGCA TGATAAAGGTGATGGTAAAAAACCTGTTAACAACTATGGTAAAGGCATGTTTGTGAAGATCAACATGGATGGTGTTCCAA TTGGGAGAAAAGTGGACCTCAATGCCTATGGCAGCTATGAAAGTCTCTCCTCTGCCGTGGATGCGCTCTTTAGAGGTCTC CTTGCAGCTCAACGAGATGCCTCTGCTGGTGGAGTTCACAACAAGCCAGAGGAAGAGAAAGCAATTACAGGTTTATTGGA TGGTAGTGGAGAGTATACTCTAGTTTATGAAGATAACGAAGGAGACAGGATGCTTGTTGGTGATGTACCGTGGCACATGT TTGTATCAACAGTGAAGAGGCTGCGAGTTTTGAAGAGTTCTGAGCTTTCTGCCTTTACCTCTGGCAATAAGCAACACCAC ACCACTTGA
Protein sequence (LotjaGi3g1v0021800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDERSRNEVSPQLLDLIPNEREWHMKKGEGGKSSEERKLELRLGPPGVEDWSLNDKMKNTQTDHESLLSLGYYSPMMPHS AKLSSNNGFHSYQHHHQGSKATSFLHHTSSQTCGPKVVELQQNKGSDNNNKVFSSPSSANTAVPNSSQKRTAPGPVVGWP PIRSFRKNLASSSTSSKPPPHESQNQHDKGDGKKPVNNYGKGMFVKINMDGVPIGRKVDLNAYGSYESLSSAVDALFRGL LAAQRDASAGGVHNKPEEEKAITGLLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVKRLRVLKSSELSAFTSGNKQHH TT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 54 | 54 | - | – | |
| PANTHER | 6 | 314 | 309 | 1.2E-105 | – | |
| PANTHER | 6 | 314 | 309 | 1.2E-105 | ||
| MobiDBLite | 19 | 44 | 26 | - | – | |
| Pfam | 39 | 311 | 273 | 1.5E-70 | ||
| MobiDBLite | 84 | 152 | 69 | - | – | |
| MobiDBLite | 84 | 199 | 116 | - | – | |
| MobiDBLite | 166 | 181 | 16 | - | – | |
| Gene3D | 197 | 319 | 123 | 1.4E-38 | – | |
| SUPERFAMILY | 197 | 303 | 107 | 7.46E-16 | – | |
| ProSiteProfiles | 202 | 306 | 105 | 24.364 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi3g1v0021800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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