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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0022400 |
| Transcript ID | LotjaGi3g1v0022400.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein CHUP1, chloroplastic; TAIR: AT1G52080.1 actin binding protein family; Swiss-Prot: sp|Q9LI74|CHUP1_ARATH Protein CHUP1, chloroplastic; TrEMBL-Plants: tr|A0A151SHS5|A0A151SHS5_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0022400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:2431001..2434874) extracted from Lotus japonicus Gifu genome v1.2.
TGTGTTGATATATGGTTGTCGTTTTGGTCATGAGAGAGACAACTTGACACGCAACCAAAACTGTTACTAAAAGACAACAT GAAACCCCAACTATATAACTTAGTACAGCTCCAAAAAAACAGATACCTTTCTGTCCTTCACAGTTCACACTCGAGTTGTC CCATTTTTGATGTTAATCTGTGTTTGGATTCATTTGGGTATGTACCTTGTCTGTTTCATCATTTGAATTGAGTTTTTGCT TCTTCACTTGTTCCCTTCCATACATATAGTTTTGAATTTGATACTGATAGATAGATTATGTGCAAATCAATCTAACCTAG CATGTATTAGTAGGCCTTGTGTGATTTGATTTGATGTGAGTAGTTTCTGTTCTTATGTACATGTTGGATTTTCCGAATTA GTTCATGTTCGGAAATCTTTCTACAATTGATTCTGAAGTCAAAATCAATTATGAGGAGAAACTTATGCGAGTAGCTTCTT GGTGACGGAATTGATTCTGAGAAAAGAGAAGCTGACAGAATTAAGTTTGATGTTTGTTGTGTATTAAGGCAACTATCCAT GAATGAGTCTTGTGTGATCTTTTTGCTGTTTTGAGATGGAGGATGGTGATGAACAAGAGCTATATGATCATGATGTTTCT CTGTCTTCATGGATTAAAGAGCAATTAGATTAATTAGGACGATGAAGATTAGAGAGGAGACGGGTATAAAGCCAACTCTG CTGAAATTTGGTTTTGCTTTGGCTCTTTCATTTGCTGGATTTCTCTTCTCACGCCTCAGAATTCGACGAATCAAGCCTCC TCCTAAGTCACCTACTGGGCATGCTTCAGGTTTGTTTCTACCTCATCAATATTTTATCTCTTTTTCCAATGATGTGAGTT CTATTGTTTTTATTGTTAATTTTAATTTCTGGTGTCTTTCTCAGCTCATGGGAATGAAGTTAATTTAGGAGAAGCATTAA GCACTTGCAACACTGTCTCGGAGGAAAAATTTCTATATGCTGTAAGTGTTTTTTTCTGGTTTGGGTGCAAATACATGCTC TGTTACTAGAGGAATTAATATATTTCTAGTTTTATAGCTGTCATTTTAGGTAGGATTTAACTGTGATTCATATCTTTTAC AATAACTATGTCGTAATGTGCAAAGTGCAAATTCTTTTTACCAAATCAATTTCAATTTGAATAATTATTGATAGCTTAAT ATGGGGTCTTCCTTTATATAGCATCTATCTATAATTCTATATAGGAATGGCTGGCTTATTCTCTTTCTTGAAATGATATT AATGGATTGGAAGTTCAAAACAAAATGGCCCTAAGAAATTAAAACCATGAATTTATTATTTTTTTCATTTGCAAAAATAA AAGGAAAAACCAAAAACCTTCTATGTTACGATCATTGTGTCTAAGATACTTTTGTGGAAACAAATAAATGTGTCTTTTAT CTTCATATCATCCTTCTGTAACTAGCAATCGATAAAATTAATTATTCACATTATATAAAGTTGGAAAAAGCTTCCAAGAT GCATTTTGTTTTTGAAAAATGAATCTAAAACAATGTAACTAATTTTCCTACATAGCAGGAAGAAACATGCATCAGTGGGG GGACAAGTGACAATTCTCCTAGAAGTAATCAAAATGGAGCTAAAGAAGAGTTCTTGCTTCCTGAATTTAATGATCTTGTT AATGAAGTAGACTTTGGAGCCACTATTGTTGGAAATTCTTTTAAAAAAGCTATAGAATTACCAAGGTTACAAGTAGGATC AGGTCCCGAGAAGGATGATTATGAGCAAGAGGCAAGTCAACTCAGGAACATGATTAGAATGCTTCAAGACAGAGAACAAA GTCTTGAGGTCCAACTTCTTGAGTACTGCGGTCTTAGAGAGCAAGAAGCAGCTGTGGCAGAGCTCCAAAATAGATTGAAG ATAAGTAATATGGAGGTAAAGATGTTCAATCTGAAGGTAAAGATGTTACAGTCTGAGAATTGCAGGTTAAAGGAACAGGT TGCTGATCATGCAAAGGTTCTGGCTGAGCTCGAGACTGCGAAAGCGAAAGTCGAACTTCTCAATACGAAAATTAGGCATG AAGCTAAACAGAATAGGGAGCATATCAGAACTCTTCAAAAAAGAGTCGCCGAGTTGCGAGACCAAGAATGCAAAGATGTT ACTTTTGATCAAGATATTCAAATAAAGCTGCAAAGGCTAAAGGGTCTTGAATCTGAAGTGGAAGAGTTGAGAAAAACTAA TTTAGAATTGCAGATGGAAAATTCTGACTTAGCTTGTAGATTGGATTCTACCCAAGTCCTTGCAAATGCTGTTGTTCTAG AAGACAATGAGGTGATAAGATTATAGTCACAGATCACGATCCTCTCATGTGGATACTTCGCATGACAATGTCATTTAAAA ATTGTGTCTATCTGTCTCTTCTCACCTATTAAATAGGTGACGGAGTCTCTGAACATTATGAAGATAGAAATAGACACATT GGATTTGGGTTCCTTGAAGGGGAATCATAAACCCACACAGTCAACGAATCTGAGTCAGTCAATCAAGATTGGATGACTCA TGTGTTTTATCAAAGATCGGACGGCGGATATAGGCTTAAAATATTAGCCATCGGATCTTGGTAGAATATTTCAGATTCCT TGACTGCGTGTGTTTAAGATTTCTCTGACTGCTCGGAATCCTAATTCCAAAGTATCATGTGATGTGAGAGAATCATAATC CCTATAACCACATACCCTCTTTCTTCAGTCAATTTTATGCACAGCTTTGATCTCTTGCTTGTGGAATGCAGGAAAATGCT TCGGTGCAAGAAAGGGACCGTCTTAGACAAGAAAACAAGCGCTTGGTGAGGGAAATTGAGCAACTACAATGTGATCGATG TTCAGACCTTGAAGAATTAGTGTACTTGCGGTGGGTAAATGCATGCTTAAGATATGAACTGCGAAATTACCAGCCCCAAC CCGGTAAAACAGTTGCAAAGGACTTAAGTAAGAGCTTAAGCCCCACTTCCGAGAAGAAAGCTAAGCAGCTTATACTTGAA TATGCAAATAATACTGATGGACAAGGGGGGATTGTGGACTTTGATTTAGACCAATGGTCCTCCTCACAGGCTTCTTTTCT GACCGACTCCGAAGAGATCAGTGATGAGTTTTCTTCTGCTGATAATTCATCTGCTGTCAAAGCTAGCCCCACAAGCCAGA TCAAAATTTTTAGCAAGCTTAGGAGACTGTTACTAGGAAAAGATAATAATCATCAGCATAGACATATTTCATCAGGATAT CGAGAAGACACAAATTCTCCGCGGCCGAGTAAATCAACCAGAAATGAGGGTAGAACTTCCTTTGATTTCTCCAGGTCGAC GAGTATGAAGGAAGGGGGTAGGAGATACTCAGGTAGCATGGTCATGGGATTGGGAAGCTCAAATAACTTGAGAAATGAAG GTTCCTTATCATATTCCTTAGACACAGAAAAATCTGATATAGAGAAATTTGCAGAAGCTTTAAAAGATTCTAGTGTGGGT GCTAAACATCAAAGGCGTAGAAGAGCAGCATCATACAGTTAGTGTGTTTTAAATCATTATCAGCATGCAAAGATTTTCCC ATTTTTTTTACTGTGAATACTATGTATTAGAAGCTTAGCATGTATATTACTAAAAGCTGTTAATTCCAGTTCAGACACAA CCTGTGTTAATCATTGGGAAGCATTAGTATATCAGTAATAGTATTTTAGCTCAGATTATCCCAGTATATTTCACATGGAA AATGAAACTCTTGTGAGAAGTCTTTCACAATTAGTTTTCCTAAGTGTGTGTCTCTAATTATTAGTACCAGACTATATTTA GCACATCTAGCTGATAAGTTAGTGGAAAGTTGAA
CDS sequence (LotjaGi3g1v0022400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGATTAGAGAGGAGACGGGTATAAAGCCAACTCTGCTGAAATTTGGTTTTGCTTTGGCTCTTTCATTTGCTGGATT TCTCTTCTCACGCCTCAGAATTCGACGAATCAAGCCTCCTCCTAAGTCACCTACTGGGCATGCTTCAGCTCATGGGAATG AAGTTAATTTAGGAGAAGCATTAAGCACTTGCAACACTGTCTCGGAGGAAAAATTTCTATATGCTCAGGAAGAAACATGC ATCAGTGGGGGGACAAGTGACAATTCTCCTAGAAGTAATCAAAATGGAGCTAAAGAAGAGTTCTTGCTTCCTGAATTTAA TGATCTTGTTAATGAAGTAGACTTTGGAGCCACTATTGTTGGAAATTCTTTTAAAAAAGCTATAGAATTACCAAGGTTAC AAGTAGGATCAGGTCCCGAGAAGGATGATTATGAGCAAGAGGCAAGTCAACTCAGGAACATGATTAGAATGCTTCAAGAC AGAGAACAAAGTCTTGAGGTCCAACTTCTTGAGTACTGCGGTCTTAGAGAGCAAGAAGCAGCTGTGGCAGAGCTCCAAAA TAGATTGAAGATAAGTAATATGGAGGTAAAGATGTTCAATCTGAAGGTAAAGATGTTACAGTCTGAGAATTGCAGGTTAA AGGAACAGGTTGCTGATCATGCAAAGGTTCTGGCTGAGCTCGAGACTGCGAAAGCGAAAGTCGAACTTCTCAATACGAAA ATTAGGCATGAAGCTAAACAGAATAGGGAGCATATCAGAACTCTTCAAAAAAGAGTCGCCGAGTTGCGAGACCAAGAATG CAAAGATGTTACTTTTGATCAAGATATTCAAATAAAGCTGCAAAGGCTAAAGGGTCTTGAATCTGAAGTGGAAGAGTTGA GAAAAACTAATTTAGAATTGCAGATGGAAAATTCTGACTTAGCTTGTAGATTGGATTCTACCCAAGTCCTTGCAAATGCT GTTGTTCTAGAAGACAATGAGGAAAATGCTTCGGTGCAAGAAAGGGACCGTCTTAGACAAGAAAACAAGCGCTTGGTGAG GGAAATTGAGCAACTACAATGTGATCGATGTTCAGACCTTGAAGAATTAGTGTACTTGCGGTGGGTAAATGCATGCTTAA GATATGAACTGCGAAATTACCAGCCCCAACCCGGTAAAACAGTTGCAAAGGACTTAAGTAAGAGCTTAAGCCCCACTTCC GAGAAGAAAGCTAAGCAGCTTATACTTGAATATGCAAATAATACTGATGGACAAGGGGGGATTGTGGACTTTGATTTAGA CCAATGGTCCTCCTCACAGGCTTCTTTTCTGACCGACTCCGAAGAGATCAGTGATGAGTTTTCTTCTGCTGATAATTCAT CTGCTGTCAAAGCTAGCCCCACAAGCCAGATCAAAATTTTTAGCAAGCTTAGGAGACTGTTACTAGGAAAAGATAATAAT CATCAGCATAGACATATTTCATCAGGATATCGAGAAGACACAAATTCTCCGCGGCCGAGTAAATCAACCAGAAATGAGGG TAGAACTTCCTTTGATTTCTCCAGGTCGACGAGTATGAAGGAAGGGGGTAGGAGATACTCAGGTAGCATGGTCATGGGAT TGGGAAGCTCAAATAACTTGAGAAATGAAGGTTCCTTATCATATTCCTTAGACACAGAAAAATCTGATATAGAGAAATTT GCAGAAGCTTTAAAAGATTCTAGTGTGGGTGCTAAACATCAAAGGCGTAGAAGAGCAGCATCATACAGTTAG
Protein sequence (LotjaGi3g1v0022400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKIREETGIKPTLLKFGFALALSFAGFLFSRLRIRRIKPPPKSPTGHASAHGNEVNLGEALSTCNTVSEEKFLYAQEETC ISGGTSDNSPRSNQNGAKEEFLLPEFNDLVNEVDFGATIVGNSFKKAIELPRLQVGSGPEKDDYEQEASQLRNMIRMLQD REQSLEVQLLEYCGLREQEAAVAELQNRLKISNMEVKMFNLKVKMLQSENCRLKEQVADHAKVLAELETAKAKVELLNTK IRHEAKQNREHIRTLQKRVAELRDQECKDVTFDQDIQIKLQRLKGLESEVEELRKTNLELQMENSDLACRLDSTQVLANA VVLEDNEENASVQERDRLRQENKRLVREIEQLQCDRCSDLEELVYLRWVNACLRYELRNYQPQPGKTVAKDLSKSLSPTS EKKAKQLILEYANNTDGQGGIVDFDLDQWSSSQASFLTDSEEISDEFSSADNSSAVKASPTSQIKIFSKLRRLLLGKDNN HQHRHISSGYREDTNSPRPSKSTRNEGRTSFDFSRSTSMKEGGRRYSGSMVMGLGSSNNLRNEGSLSYSLDTEKSDIEKF AEALKDSSVGAKHQRRRRAASYS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | - | – | |
| PANTHER | 5 | 583 | 579 | 1.5E-188 | ||
| PANTHER | 5 | 583 | 579 | 1.5E-188 | – | |
| Phobius | 12 | 32 | 21 | - | – | |
| TMHMM | 13 | 30 | 18 | - | – | |
| Phobius | 33 | 583 | 551 | - | – | |
| Coils | 141 | 168 | 28 | - | – | |
| Coils | 175 | 195 | 21 | - | – | |
| Coils | 220 | 265 | 46 | - | – | |
| Coils | 276 | 310 | 35 | - | – | |
| Coils | 323 | 355 | 33 | - | – | |
| MobiDBLite | 478 | 545 | 68 | - | – | |
| MobiDBLite | 492 | 523 | 32 | - | – | |
| MobiDBLite | 531 | 545 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0022400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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