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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0022400 |
| Transcript ID | LotjaGi3g1v0022400.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein CHUP1, chloroplastic; TAIR: AT1G52080.1 actin binding protein family; Swiss-Prot: sp|Q9LI74|CHUP1_ARATH Protein CHUP1, chloroplastic; TrEMBL-Plants: tr|I1MCW3|I1MCW3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0022400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:2431057..2434786) extracted from Lotus japonicus Gifu genome v1.2.
AAAACTGTTACTAAAAGACAACATGAAACCCCAACTATATAACTTAGTACAGCTCCAAAAAAACAGATACCTTTCTGTCC TTCACAGTTCACACTCGAGTTGTCCCATTTTTGATGTTAATCTGTGTTTGGATTCATTTGGGTATGTACCTTGTCTGTTT CATCATTTGAATTGAGTTTTTGCTTCTTCACTTGTTCCCTTCCATACATATAGTTTTGAATTTGATACTGATAGATAGAT TATGTGCAAATCAATCTAACCTAGCATGTATTAGTAGGCCTTGTGTGATTTGATTTGATGTGAGTAGTTTCTGTTCTTAT GTACATGTTGGATTTTCCGAATTAGTTCATGTTCGGAAATCTTTCTACAATTGATTCTGAAGTCAAAATCAATTATGAGG AGAAACTTATGCGAGTAGCTTCTTGGTGACGGAATTGATTCTGAGAAAAGAGAAGCTGACAGAATTAAGTTTGATGTTTG TTGTGTATTAAGGCAACTATCCATGAATGAGTCTTGTGTGATCTTTTTGCTGTTTTGAGATGGAGGATGGTGATGAACAA GAGCTATATGATCATGATGTTTCTCTGTCTTCATGGATTAAAGAGCAATTAGATTAATTAGGACGATGAAGATTAGAGAG GAGACGGGTATAAAGCCAACTCTGCTGAAATTTGGTTTTGCTTTGGCTCTTTCATTTGCTGGATTTCTCTTCTCACGCCT CAGAATTCGACGAATCAAGCCTCCTCCTAAGTCACCTACTGGGCATGCTTCAGGTTTGTTTCTACCTCATCAATATTTTA TCTCTTTTTCCAATGATGTGAGTTCTATTGTTTTTATTGTTAATTTTAATTTCTGGTGTCTTTCTCAGCTCATGGGAATG AAGTTAATTTAGGAGAAGCATTAAGCACTTGCAACACTGTCTCGGAGGAAAAATTTCTATATGCTGTAAGTGTTTTTTTC TGGTTTGGGTGCAAATACATGCTCTGTTACTAGAGGAATTAATATATTTCTAGTTTTATAGCTGTCATTTTAGGTAGGAT TTAACTGTGATTCATATCTTTTACAATAACTATGTCGTAATGTGCAAAGTGCAAATTCTTTTTACCAAATCAATTTCAAT TTGAATAATTATTGATAGCTTAATATGGGGTCTTCCTTTATATAGCATCTATCTATAATTCTATATAGGAATGGCTGGCT TATTCTCTTTCTTGAAATGATATTAATGGATTGGAAGTTCAAAACAAAATGGCCCTAAGAAATTAAAACCATGAATTTAT TATTTTTTTCATTTGCAAAAATAAAAGGAAAAACCAAAAACCTTCTATGTTACGATCATTGTGTCTAAGATACTTTTGTG GAAACAAATAAATGTGTCTTTTATCTTCATATCATCCTTCTGTAACTAGCAATCGATAAAATTAATTATTCACATTATAT AAAGTTGGAAAAAGCTTCCAAGATGCATTTTGTTTTTGAAAAATGAATCTAAAACAATGTAACTAATTTTCCTACATAGC AGGAAGAAACATGCATCAGTGGGGGGACAAGTGACAATTCTCCTAGAAGTAATCAAAATGGAGCTAAAGAAGAGTTCTTG CTTCCTGAATTTAATGATCTTGTTAATGAAGTAGACTTTGGAGCCACTATTGTTGGAAATTCTTTTAAAAAAGCTATAGA ATTACCAAGGTTACAAGTAGGATCAGGTCCCGAGAAGGATGATTATGAGCAAGAGGCAAGTCAACTCAGGAACATGATTA GAATGCTTCAAGACAGAGAACAAAGTCTTGAGGTCCAACTTCTTGAGTACTGCGGTCTTAGAGAGCAAGAAGCAGCTGTG GCAGAGCTCCAAAATAGATTGAAGATAAGTAATATGGAGGTAAAGATGTTCAATCTGAAGGTAAAGATGTTACAGTCTGA GAATTGCAGGTTAAAGGAACAGGTTGCTGATCATGCAAAGGTTCTGGCTGAGCTCGAGACTGCGAAAGCGAAAGTCGAAC TTCTCAATACGAAAATTAGGCATGAAGCTAAACAGAATAGGGAGCATATCAGAACTCTTCAAAAAAGAGTCGCCGAGTTG CGAGACCAAGAATGCAAAGATGTTACTTTTGATCAAGATATTCAAATAAAGCTGCAAAGGCTAAAGGGTCTTGAATCTGA AGTGGAAGAGTTGAGAAAAACTAATTTAGAATTGCAGATGGAAAATTCTGACTTAGCTTGTAGATTGGATTCTACCCAAG TCCTTGCAAATGCTGTTGTTCTAGAAGACAATGAGGTGATAAGATTATAGTCACAGATCACGATCCTCTCATGTGGATAC TTCGCATGACAATGTCATTTAAAAATTGTGTCTATCTGTCTCTTCTCACCTATTAAATAGGTGACGGAGTCTCTGAACAT TATGAAGATAGAAATAGACACATTGGATTTGGGTTCCTTGAAGGGGAATCATAAACCCACACAGTCAACGAATCTGAGTC AGTCAATCAAGATTGGATGACTCATGTGTTTTATCAAAGATCGGACGGCGGATATAGGCTTAAAATATTAGCCATCGGAT CTTGGTAGAATATTTCAGATTCCTTGACTGCGTGTGTTTAAGATTTCTCTGACTGCTCGGAATCCTAATTCCAAAGTATC ATGTGATGTGAGAGAATCATAATCCCTATAACCACATACCCTCTTTCTTCAGTCAATTTTATGCACAGCTTTGATCTCTT GCTTGTGGAATGCAGGAAAATGCTTCGGTGCAAGAAAGGGACCGTCTTAGACAAGAAAACAAGCGCTTGGTGAGGGAAAT TGAGCAACTACAATGTGATCGATGTTCAGACCTTGAAGAATTAGTGTACTTGCGGTGGGTAAATGCATGCTTAAGATATG AACTGCGAAATTACCAGCCCCAACCCGGTAAAACAGTTGCAAAGGACTTAAGTAAGAGCTTAAGCCCCACTTCCGAGAAG AAAGCTAAGCAGCTTATACTTGAATATGCAAATAATACTGATGGACAAGGGGGGATTGTGGACTTTGATTTAGACCAATG GTCCTCCTCACAGGCTTCTTTTCTGACCGACTCCGAAGAGATCAGTGATGAGTTTTCTTCTGCTGATAATTCATCTGCTG TCAAAGCTAGCCCCACAAGCCAGATCAAAATTTTTAGCAAGCTTAGGAGACTGTTACTAGGAAAAGATAATAATCATCAG CATAGACATATTTCATCAGGATATCGAGAAGACACAAATTCTCCGCGGCCGAGTAAATCAACCAGAAATGAGGGTAGAAC TTCCTTTGATTTCTCCAGGTCGACGAGTATGAAGGAAGGGGGTAGGAGATACTCAGGTAGCATGGTCATGGGATTGGGAA GCTCAAATAACTTGAGAAATGAAGGTTCCTTATCATATTCCTTAGACACAGAAAAATCTGATATAGAGAAATTTGCAGAA GCTTTAAAAGATTCTAGTGTGGGTGCTAAACATCAAAGGCGTAGAAGAGCAGCATCATACAGTTAGTGTGTTTTAAATCA TTATCAGCATGCAAAGATTTTCCCATTTTTTTTACTGTGAATACTATGTATTAGAAGCTTAGCATGTATATTACTAAAAG CTGTTAATTCCAGTTCAGACACAACCTGTGTTAATCATTGGGAAGCATTAGTATATCAGTAATAGTATTTTAGCTCAGAT TATCCCAGTATATTTCACATGGAAAATGAAACTCTTGTGAGAAGTCTTTC
CDS sequence (LotjaGi3g1v0022400.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGATTAGAGAGGAGACGGGTATAAAGCCAACTCTGCTGAAATTTGGTTTTGCTTTGGCTCTTTCATTTGCTGGATT TCTCTTCTCACGCCTCAGAATTCGACGAATCAAGCCTCCTCCTAAGTCACCTACTGGGCATGCTTCAGCTCATGGGAATG AAGTTAATTTAGGAGAAGCATTAAGCACTTGCAACACTGTCTCGGAGGAAAAATTTCTATATGCTGAAGAAACATGCATC AGTGGGGGGACAAGTGACAATTCTCCTAGAAGTAATCAAAATGGAGCTAAAGAAGAGTTCTTGCTTCCTGAATTTAATGA TCTTGTTAATGAAGTAGACTTTGGAGCCACTATTGTTGGAAATTCTTTTAAAAAAGCTATAGAATTACCAAGGTTACAAG TAGGATCAGGTCCCGAGAAGGATGATTATGAGCAAGAGGCAAGTCAACTCAGGAACATGATTAGAATGCTTCAAGACAGA GAACAAAGTCTTGAGGTCCAACTTCTTGAGTACTGCGGTCTTAGAGAGCAAGAAGCAGCTGTGGCAGAGCTCCAAAATAG ATTGAAGATAAGTAATATGGAGGTAAAGATGTTCAATCTGAAGGTAAAGATGTTACAGTCTGAGAATTGCAGGTTAAAGG AACAGGTTGCTGATCATGCAAAGGTTCTGGCTGAGCTCGAGACTGCGAAAGCGAAAGTCGAACTTCTCAATACGAAAATT AGGCATGAAGCTAAACAGAATAGGGAGCATATCAGAACTCTTCAAAAAAGAGTCGCCGAGTTGCGAGACCAAGAATGCAA AGATGTTACTTTTGATCAAGATATTCAAATAAAGCTGCAAAGGCTAAAGGGTCTTGAATCTGAAGTGGAAGAGTTGAGAA AAACTAATTTAGAATTGCAGATGGAAAATTCTGACTTAGCTTGTAGATTGGATTCTACCCAAGTCCTTGCAAATGCTGTT GTTCTAGAAGACAATGAGGAAAATGCTTCGGTGCAAGAAAGGGACCGTCTTAGACAAGAAAACAAGCGCTTGGTGAGGGA AATTGAGCAACTACAATGTGATCGATGTTCAGACCTTGAAGAATTAGTGTACTTGCGGTGGGTAAATGCATGCTTAAGAT ATGAACTGCGAAATTACCAGCCCCAACCCGGTAAAACAGTTGCAAAGGACTTAAGTAAGAGCTTAAGCCCCACTTCCGAG AAGAAAGCTAAGCAGCTTATACTTGAATATGCAAATAATACTGATGGACAAGGGGGGATTGTGGACTTTGATTTAGACCA ATGGTCCTCCTCACAGGCTTCTTTTCTGACCGACTCCGAAGAGATCAGTGATGAGTTTTCTTCTGCTGATAATTCATCTG CTGTCAAAGCTAGCCCCACAAGCCAGATCAAAATTTTTAGCAAGCTTAGGAGACTGTTACTAGGAAAAGATAATAATCAT CAGCATAGACATATTTCATCAGGATATCGAGAAGACACAAATTCTCCGCGGCCGAGTAAATCAACCAGAAATGAGGGTAG AACTTCCTTTGATTTCTCCAGGTCGACGAGTATGAAGGAAGGGGGTAGGAGATACTCAGGTAGCATGGTCATGGGATTGG GAAGCTCAAATAACTTGAGAAATGAAGGTTCCTTATCATATTCCTTAGACACAGAAAAATCTGATATAGAGAAATTTGCA GAAGCTTTAAAAGATTCTAGTGTGGGTGCTAAACATCAAAGGCGTAGAAGAGCAGCATCATACAGTTAG
Protein sequence (LotjaGi3g1v0022400.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKIREETGIKPTLLKFGFALALSFAGFLFSRLRIRRIKPPPKSPTGHASAHGNEVNLGEALSTCNTVSEEKFLYAEETCI SGGTSDNSPRSNQNGAKEEFLLPEFNDLVNEVDFGATIVGNSFKKAIELPRLQVGSGPEKDDYEQEASQLRNMIRMLQDR EQSLEVQLLEYCGLREQEAAVAELQNRLKISNMEVKMFNLKVKMLQSENCRLKEQVADHAKVLAELETAKAKVELLNTKI RHEAKQNREHIRTLQKRVAELRDQECKDVTFDQDIQIKLQRLKGLESEVEELRKTNLELQMENSDLACRLDSTQVLANAV VLEDNEENASVQERDRLRQENKRLVREIEQLQCDRCSDLEELVYLRWVNACLRYELRNYQPQPGKTVAKDLSKSLSPTSE KKAKQLILEYANNTDGQGGIVDFDLDQWSSSQASFLTDSEEISDEFSSADNSSAVKASPTSQIKIFSKLRRLLLGKDNNH QHRHISSGYREDTNSPRPSKSTRNEGRTSFDFSRSTSMKEGGRRYSGSMVMGLGSSNNLRNEGSLSYSLDTEKSDIEKFA EALKDSSVGAKHQRRRRAASYS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | - | – | |
| PANTHER | 5 | 582 | 578 | 1.2E-189 | ||
| PANTHER | 5 | 582 | 578 | 1.2E-189 | – | |
| Phobius | 12 | 32 | 21 | - | – | |
| TMHMM | 13 | 30 | 18 | - | – | |
| Phobius | 33 | 582 | 550 | - | – | |
| Coils | 140 | 167 | 28 | - | – | |
| Coils | 174 | 194 | 21 | - | – | |
| Coils | 219 | 264 | 46 | - | – | |
| Coils | 275 | 309 | 35 | - | – | |
| Coils | 322 | 354 | 33 | - | – | |
| MobiDBLite | 477 | 544 | 68 | - | – | |
| MobiDBLite | 491 | 522 | 32 | - | – | |
| MobiDBLite | 530 | 544 | 15 | - | – | |
| Coils | 582 | 582 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0022400.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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