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LotjaGi3g1v0026100.1

Overview

Field Value
Gene ID LotjaGi3g1v0026100
Transcript ID LotjaGi3g1v0026100.1
Lotus japonicus genome version Gifu v1.2
Description Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; TAIR: AT1G17620.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; Swiss-Prot: sp|Q9ZVD2|NHL13_ARATH NDR1/HIN1-like protein 13; TrEMBL-Plants: tr|I1MCZ5|I1MCZ5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0026100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:2834994..2838278) extracted from Lotus japonicus Gifu genome v1.2.

AACATAATCTCATAATCTCAGGAGATCAATTTCATGACTGCCGACTCTAGAAACCCTAAATTTCAAACCCTTCCCACTTC CCAGTGCTGTGCAGCACGTTCTCCTTTTACTTTGTCCACTCTCCATTCCCAAACATCCAAAAAAGAATCACTTTTCTCTT CTTATTATTCTCTGTCATCATATTATTACTCATTATAAAGTACTAATCCCTAATCCTAATACTACTAGTAACACAATTCC CTCTTCTCTTCATTCACCGACAACATGACAGACAGGGTCTACCCTTCCGCCAAAACCACCGCCGCCACAAACGGCACCGC CACCACCAACCCAACTTTCCCCGCCACAAAGGCCCAACTCTACGGCGCCAACCGCCCTGCTTACCGCCCTCAACCCCTCC ACCGCCGCACCCGCCGCCGCTGCTTCTGCACCTTCTGCTTCTGGCTAATCCTCATCATCCTCATCCTCCTCCTCATCATC GGCGGTGCTGGCGTCGCCTTCTACCTCCTCTACCGCCCCCACCACCCCACCTTCTCCGTCACCTCCCTCAAACTCTCCTA CCTCAACCTCACCTCCTCCTCAACCCTCTCCTCCAAATTCGACCTCACCGTCGCCGCCACAAACCCCAACAAGAAAAACA TCGCATTCTCCTACCTACCCACTTCCATCACCATACTCTCCGGCGACGTCGACGTCGGCGACGGAACCATACCCACTTTC CATCACGGCAAGAAAAACACAACACTGCTGAAATCTTCGATTTCGAGCAGTGGGCATGAGTTGGATGCTGACGCTGCGAA GAAGTTGAAGGCGAGCATGAAGAGCAAGAACGGGTTGCCATTGAAGGTGAAGCTCGACACGAAGGTGAAGGCTACAATGG GGAAATTGAAGACTCCTCGAGTTGGAATCAGAGTCTCATGTGATGGAATCAGAGTCACTCTTCCGACAGGGAAGAAACCT GCGACGGCGTCGACCTCGAACGCGAAATGCAATGTTGATGTCAGATTCAAGATCTGGAAATGGACGGTTGGATGAAGAAG ATGATCATGATGCTGCAATAGAGGTGTGAACACTGTGTTATTTTTATTTTTTGCTTAATTTATTTCTGGATTTTAATTTT ATTTTTTGGGATTTTTGTTCAAAATTATATTATATGATCCATTATTACATAAACGCGTGTAAATTGCGATGAAGACTTTT TGAATTTTAAGTCGGTGACAGTTGTTAGCACATTCATTGTATTATATACTAGTTATTTTCTTTCTCTTTTTAGAAGGATC TTGTATTCTCTTAGGCTTTGTTTGGTTTGAGGGAGAGGAAAGGAAAGGGAAGGAAAATACGGAAATCGATTCCTCTCCCT CCAACCAAACATAGCATTAGTTTATTTTCTGTATTATTTTTTGATTGTTTATTCCATTGCGTTACTTGGGAGCATTATTG ATTTTGATTTGTTGTGTTGTGTGATGTGAAATTATTGGCTCCTATTAGTGATGTGATGGCGTCTCTTTGACATTGCTGAT GTTAAAAGGACAAGGGAGTGTGTCTTTGGCTCTTTGCACACAAGGGAAGTGCTCCCTTTATATTAGAGTTTGGTCCTTTA AATTACAGTTTAATTGGATGTGAAAATTCTTTAATTTGATCTTTTGTTACTTCAAAAATGTATTTTCTTTGTATTGAAAT GTGTTCTAATATGAGTAGAAAGTGTAGTTGGATGATGGATCAAATAATGAAATTATAAGTCATTTTTACCAAATTTTCTA TGATTAAGAAAAATAGTTAGTTTTTATAAATTAGTAAAAAAATTATTATCTTTCCTATAAAAACTTATAAACTCAATAAA ATATCCCCTCTCCTTTAATTATTTGCTTAATTTCTAATTAATTTATCTCTCAAACATATTGTTGAAGAAGAACAGTAAAT AATGTTTGCATTTTATGGCTTGTGCCGACAGAGAGAATTGATCATAGGGAGTAGTTTCAACTTCCAAGTCAAAATTCCAA GTCAATTAATTTTGATGGTGTAGTGCTACAGCACTAGTACACGGGGGCCCTTTAATCTTTGACTTATGATAGTAATTATT TTGTACTATGTGAATTTAGGAGGCCAAAGATGTAGTACCCGAAATTAAAACCAACCAACAAAAAAAAATTAAATTACACT CCTCTCGTTTTCCTCTTCTAAAAAAATCTACACTCCTTTAATCTAATGTAAGCACTTAAGGAGAGGGAACTAGGCCTCAT TTAAAAGAGTTTATTTGAGCTTATCTGATAGCATAAACTCTTATGTCAGTGTTTGTGAGAACTTATGCAAACAATTTATG ACTTATCATAAGCCGTTTTGAGCTTATTTTCATAAGTTATCCAGGATTGTTTACGAAAAATAGTTTATACTTATATATAA CTTATTTTCGATTTATTTTAATAAAAAATTTAAAATAGCTTATGAATAAGCGCTAATGTTATAAGCATTTATGACCATAA ACGCTTAATTAAGCTGTGTTTCCAAACGAAACCTAAAGGAACCCAAGCCCAACTAAGCAATTCTAACTAGTTGATCATAA AGAAATTATATTGTTTCAAAAATGAGTTTATTAGAGCAAACTAAGGGTTAGGTGAGAAATAACAGGGATGATGACACATA AAGAAAAGGACTGATTAACCATATGTTTTGTTAAATTATTTAGAGCACCTTTGGTCGTCTAATATTGCTGATGTGTAATT TTGGTCATATAATATTGTTTTTTTTTTGGTTAACAGGAAAATATATATAATATTGTTTGAGTAGACTAAGTTTCTCTTCC ATTTTTATTTTACTTAAAACTCCTGATTTTTTATTTATTTATTTAATAAAAATTTCCCCAAATTGAATATAGTTAATTTC TTTGGACACATCTTTCCTTAAATTTCCTCAATCAAAATATAACATGTCAACTTAAAGTTGAAACTTTCACTTTTCTTTCT TTTTTTACATAAGAATGGTAGAATGGAGAGAAAACACATCCAGACTATTAGGTAGGGCGCTAGTGACATGCTGAAGAGGT CAGCAGAGACTCACTCCTGGTAGGAGCGTCGAAGATCTCCTTAATAAGAGTTGTCTATCAACTGGAAATTTACTGCCTTC AAAAAAAAAAAAACTGGAATTTTACTGACTCTAGGGTAATTTGAACCCTCACCTAATGAGGAACCATAATCTCTATGTAA AAAAGTCATAATCAAATTTATCAAATATCAACTACAAAGCTTATCAAATTTTAATATACAAGGCTCGTTTTTTAAAAAGG AACCT 

CDS sequence (LotjaGi3g1v0026100.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGACAGACAGGGTCTACCCTTCCGCCAAAACCACCGCCGCCACAAACGGCACCGCCACCACCAACCCAACTTTCCCCGC CACAAAGGCCCAACTCTACGGCGCCAACCGCCCTGCTTACCGCCCTCAACCCCTCCACCGCCGCACCCGCCGCCGCTGCT TCTGCACCTTCTGCTTCTGGCTAATCCTCATCATCCTCATCCTCCTCCTCATCATCGGCGGTGCTGGCGTCGCCTTCTAC CTCCTCTACCGCCCCCACCACCCCACCTTCTCCGTCACCTCCCTCAAACTCTCCTACCTCAACCTCACCTCCTCCTCAAC CCTCTCCTCCAAATTCGACCTCACCGTCGCCGCCACAAACCCCAACAAGAAAAACATCGCATTCTCCTACCTACCCACTT CCATCACCATACTCTCCGGCGACGTCGACGTCGGCGACGGAACCATACCCACTTTCCATCACGGCAAGAAAAACACAACA CTGCTGAAATCTTCGATTTCGAGCAGTGGGCATGAGTTGGATGCTGACGCTGCGAAGAAGTTGAAGGCGAGCATGAAGAG CAAGAACGGGTTGCCATTGAAGGTGAAGCTCGACACGAAGGTGAAGGCTACAATGGGGAAATTGAAGACTCCTCGAGTTG GAATCAGAGTCTCATGTGATGGAATCAGAGTCACTCTTCCGACAGGGAAGAAACCTGCGACGGCGTCGACCTCGAACGCG AAATGCAATGTTGATGTCAGATTCAAGATCTGGAAATGGACGGTTGGATGA 

Protein sequence (LotjaGi3g1v0026100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MTDRVYPSAKTTAATNGTATTNPTFPATKAQLYGANRPAYRPQPLHRRTRRRCFCTFCFWLILIILILLLIIGGAGVAFY LLYRPHHPTFSVTSLKLSYLNLTSSSTLSSKFDLTVAATNPNKKNIAFSYLPTSITILSGDVDVGDGTIPTFHHGKKNTT LLKSSISSSGHELDADAAKKLKASMKSKNGLPLKVKLDTKVKATMGKLKTPRVGIRVSCDGIRVTLPTGKKPATASTSNA KCNVDVRFKIWKWTVG 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite 1 23 23 -
Phobius 1 56 56 -
PANTHER 1 255 255 5.3E-103
PANTHER 1 255 255 5.3E-103
Phobius 57 83 27 -
TMHMM 57 79 23 -
Phobius 84 256 173 -
SUPERFAMILY 85 211 127 4.32E-6
Pfam 115 219 105 3.0E-9

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0026100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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