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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0026100 |
| Transcript ID | LotjaGi3g1v0026100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; TAIR: AT1G17620.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; Swiss-Prot: sp|Q9ZVD2|NHL13_ARATH NDR1/HIN1-like protein 13; TrEMBL-Plants: tr|I1MCZ5|I1MCZ5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0026100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:2834994..2838278) extracted from Lotus japonicus Gifu genome v1.2.
AACATAATCTCATAATCTCAGGAGATCAATTTCATGACTGCCGACTCTAGAAACCCTAAATTTCAAACCCTTCCCACTTC CCAGTGCTGTGCAGCACGTTCTCCTTTTACTTTGTCCACTCTCCATTCCCAAACATCCAAAAAAGAATCACTTTTCTCTT CTTATTATTCTCTGTCATCATATTATTACTCATTATAAAGTACTAATCCCTAATCCTAATACTACTAGTAACACAATTCC CTCTTCTCTTCATTCACCGACAACATGACAGACAGGGTCTACCCTTCCGCCAAAACCACCGCCGCCACAAACGGCACCGC CACCACCAACCCAACTTTCCCCGCCACAAAGGCCCAACTCTACGGCGCCAACCGCCCTGCTTACCGCCCTCAACCCCTCC ACCGCCGCACCCGCCGCCGCTGCTTCTGCACCTTCTGCTTCTGGCTAATCCTCATCATCCTCATCCTCCTCCTCATCATC GGCGGTGCTGGCGTCGCCTTCTACCTCCTCTACCGCCCCCACCACCCCACCTTCTCCGTCACCTCCCTCAAACTCTCCTA CCTCAACCTCACCTCCTCCTCAACCCTCTCCTCCAAATTCGACCTCACCGTCGCCGCCACAAACCCCAACAAGAAAAACA TCGCATTCTCCTACCTACCCACTTCCATCACCATACTCTCCGGCGACGTCGACGTCGGCGACGGAACCATACCCACTTTC CATCACGGCAAGAAAAACACAACACTGCTGAAATCTTCGATTTCGAGCAGTGGGCATGAGTTGGATGCTGACGCTGCGAA GAAGTTGAAGGCGAGCATGAAGAGCAAGAACGGGTTGCCATTGAAGGTGAAGCTCGACACGAAGGTGAAGGCTACAATGG GGAAATTGAAGACTCCTCGAGTTGGAATCAGAGTCTCATGTGATGGAATCAGAGTCACTCTTCCGACAGGGAAGAAACCT GCGACGGCGTCGACCTCGAACGCGAAATGCAATGTTGATGTCAGATTCAAGATCTGGAAATGGACGGTTGGATGAAGAAG ATGATCATGATGCTGCAATAGAGGTGTGAACACTGTGTTATTTTTATTTTTTGCTTAATTTATTTCTGGATTTTAATTTT ATTTTTTGGGATTTTTGTTCAAAATTATATTATATGATCCATTATTACATAAACGCGTGTAAATTGCGATGAAGACTTTT TGAATTTTAAGTCGGTGACAGTTGTTAGCACATTCATTGTATTATATACTAGTTATTTTCTTTCTCTTTTTAGAAGGATC TTGTATTCTCTTAGGCTTTGTTTGGTTTGAGGGAGAGGAAAGGAAAGGGAAGGAAAATACGGAAATCGATTCCTCTCCCT CCAACCAAACATAGCATTAGTTTATTTTCTGTATTATTTTTTGATTGTTTATTCCATTGCGTTACTTGGGAGCATTATTG ATTTTGATTTGTTGTGTTGTGTGATGTGAAATTATTGGCTCCTATTAGTGATGTGATGGCGTCTCTTTGACATTGCTGAT GTTAAAAGGACAAGGGAGTGTGTCTTTGGCTCTTTGCACACAAGGGAAGTGCTCCCTTTATATTAGAGTTTGGTCCTTTA AATTACAGTTTAATTGGATGTGAAAATTCTTTAATTTGATCTTTTGTTACTTCAAAAATGTATTTTCTTTGTATTGAAAT GTGTTCTAATATGAGTAGAAAGTGTAGTTGGATGATGGATCAAATAATGAAATTATAAGTCATTTTTACCAAATTTTCTA TGATTAAGAAAAATAGTTAGTTTTTATAAATTAGTAAAAAAATTATTATCTTTCCTATAAAAACTTATAAACTCAATAAA ATATCCCCTCTCCTTTAATTATTTGCTTAATTTCTAATTAATTTATCTCTCAAACATATTGTTGAAGAAGAACAGTAAAT AATGTTTGCATTTTATGGCTTGTGCCGACAGAGAGAATTGATCATAGGGAGTAGTTTCAACTTCCAAGTCAAAATTCCAA GTCAATTAATTTTGATGGTGTAGTGCTACAGCACTAGTACACGGGGGCCCTTTAATCTTTGACTTATGATAGTAATTATT TTGTACTATGTGAATTTAGGAGGCCAAAGATGTAGTACCCGAAATTAAAACCAACCAACAAAAAAAAATTAAATTACACT CCTCTCGTTTTCCTCTTCTAAAAAAATCTACACTCCTTTAATCTAATGTAAGCACTTAAGGAGAGGGAACTAGGCCTCAT TTAAAAGAGTTTATTTGAGCTTATCTGATAGCATAAACTCTTATGTCAGTGTTTGTGAGAACTTATGCAAACAATTTATG ACTTATCATAAGCCGTTTTGAGCTTATTTTCATAAGTTATCCAGGATTGTTTACGAAAAATAGTTTATACTTATATATAA CTTATTTTCGATTTATTTTAATAAAAAATTTAAAATAGCTTATGAATAAGCGCTAATGTTATAAGCATTTATGACCATAA ACGCTTAATTAAGCTGTGTTTCCAAACGAAACCTAAAGGAACCCAAGCCCAACTAAGCAATTCTAACTAGTTGATCATAA AGAAATTATATTGTTTCAAAAATGAGTTTATTAGAGCAAACTAAGGGTTAGGTGAGAAATAACAGGGATGATGACACATA AAGAAAAGGACTGATTAACCATATGTTTTGTTAAATTATTTAGAGCACCTTTGGTCGTCTAATATTGCTGATGTGTAATT TTGGTCATATAATATTGTTTTTTTTTTGGTTAACAGGAAAATATATATAATATTGTTTGAGTAGACTAAGTTTCTCTTCC ATTTTTATTTTACTTAAAACTCCTGATTTTTTATTTATTTATTTAATAAAAATTTCCCCAAATTGAATATAGTTAATTTC TTTGGACACATCTTTCCTTAAATTTCCTCAATCAAAATATAACATGTCAACTTAAAGTTGAAACTTTCACTTTTCTTTCT TTTTTTACATAAGAATGGTAGAATGGAGAGAAAACACATCCAGACTATTAGGTAGGGCGCTAGTGACATGCTGAAGAGGT CAGCAGAGACTCACTCCTGGTAGGAGCGTCGAAGATCTCCTTAATAAGAGTTGTCTATCAACTGGAAATTTACTGCCTTC AAAAAAAAAAAAACTGGAATTTTACTGACTCTAGGGTAATTTGAACCCTCACCTAATGAGGAACCATAATCTCTATGTAA AAAAGTCATAATCAAATTTATCAAATATCAACTACAAAGCTTATCAAATTTTAATATACAAGGCTCGTTTTTTAAAAAGG AACCT
CDS sequence (LotjaGi3g1v0026100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACAGACAGGGTCTACCCTTCCGCCAAAACCACCGCCGCCACAAACGGCACCGCCACCACCAACCCAACTTTCCCCGC CACAAAGGCCCAACTCTACGGCGCCAACCGCCCTGCTTACCGCCCTCAACCCCTCCACCGCCGCACCCGCCGCCGCTGCT TCTGCACCTTCTGCTTCTGGCTAATCCTCATCATCCTCATCCTCCTCCTCATCATCGGCGGTGCTGGCGTCGCCTTCTAC CTCCTCTACCGCCCCCACCACCCCACCTTCTCCGTCACCTCCCTCAAACTCTCCTACCTCAACCTCACCTCCTCCTCAAC CCTCTCCTCCAAATTCGACCTCACCGTCGCCGCCACAAACCCCAACAAGAAAAACATCGCATTCTCCTACCTACCCACTT CCATCACCATACTCTCCGGCGACGTCGACGTCGGCGACGGAACCATACCCACTTTCCATCACGGCAAGAAAAACACAACA CTGCTGAAATCTTCGATTTCGAGCAGTGGGCATGAGTTGGATGCTGACGCTGCGAAGAAGTTGAAGGCGAGCATGAAGAG CAAGAACGGGTTGCCATTGAAGGTGAAGCTCGACACGAAGGTGAAGGCTACAATGGGGAAATTGAAGACTCCTCGAGTTG GAATCAGAGTCTCATGTGATGGAATCAGAGTCACTCTTCCGACAGGGAAGAAACCTGCGACGGCGTCGACCTCGAACGCG AAATGCAATGTTGATGTCAGATTCAAGATCTGGAAATGGACGGTTGGATGA
Protein sequence (LotjaGi3g1v0026100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTDRVYPSAKTTAATNGTATTNPTFPATKAQLYGANRPAYRPQPLHRRTRRRCFCTFCFWLILIILILLLIIGGAGVAFY LLYRPHHPTFSVTSLKLSYLNLTSSSTLSSKFDLTVAATNPNKKNIAFSYLPTSITILSGDVDVGDGTIPTFHHGKKNTT LLKSSISSSGHELDADAAKKLKASMKSKNGLPLKVKLDTKVKATMGKLKTPRVGIRVSCDGIRVTLPTGKKPATASTSNA KCNVDVRFKIWKWTVG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 23 | 23 | - | – | |
| Phobius | 1 | 56 | 56 | - | – | |
| PANTHER | 1 | 255 | 255 | 5.3E-103 | – | |
| PANTHER | 1 | 255 | 255 | 5.3E-103 | – | |
| Phobius | 57 | 83 | 27 | - | – | |
| TMHMM | 57 | 79 | 23 | - | – | |
| Phobius | 84 | 256 | 173 | - | – | |
| SUPERFAMILY | 85 | 211 | 127 | 4.32E-6 | – | |
| Pfam | 115 | 219 | 105 | 3.0E-9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0026100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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